File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__04da504a--20260522-114016/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp09_10-04da504a
- Published
- May 22, 2026 7:51 PM
Content
View in new tab| sample_id | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | IS_CONTAMINATED | CONTAMINATION_PCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | TOTAL_READS | EXPECTED_DISTINCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | 160.2 | 145.0 | 0.02 | 1.73 | 0.54 | 0.0 | 0.04 | 5.02 | 0.85 | 0.0 | Yes | 62.44 | 590717084.0 | 0.005972 | 0.402361 | 353035759.0 | 0.941342 | 0.971239 | 0.048665 | 0.028761 | 332327275.0 | 168487428.0 | 17180459.0 | 4989373.0 | 700.654535 | 316.0 | 0.73083 | 0.637288 | 0.970633 | 0.0 | 9999000000.0 | 549601287.0 | 215 | 572.367272 | 0.404778 | 0.0 | 97.1817 | 88.90979317753455 | 95.67 | 282580628.0 | 26.4349 | 0.969699 | 76077869569.0 | 590717084.0 | 0.544064 | 98.45284733333334 | 45.679577 | |||||||||
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | 178.1 | 162.0 | 0.01 | 1.83 | 0.58 | 0.0 | 0.02 | 5.43 | 0.9 | 0.0 | Yes | 61.47 | 592126740.0 | 0.005691 | 0.397264 | 356896276.0 | 0.941087 | 0.973531 | 0.049472 | 0.026469 | 335870434.0 | 171035285.0 | 17656326.0 | 4650289.0 | 758.840698 | 327.0 | 0.732716 | 0.640051 | 0.972922 | 0.0 | 9999000000.0 | 540503216.0 | 286 | 807.437321 | 0.399537 | 0.0 | 97.1226 | 89.78934104258131 | 95.99 | 284197109.0 | 29.185100000000002 | 0.972069 | 80206257272.0 | 592126740.0 | 0.549324 | 98.68778999999999 | 35.120809333333334 | |||||||||
| NTC_0001_0001_B23MHV2LT4_1 | 61.4 | 31.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | Skipped | N/A | 47120.0 | 0.441469 | 0.458383 | 25521.0 | 0.011128 | 0.064049 | 0.173778 | 0.935951 | 284.0 | 137.0 | 4435.0 | 2002.0 | 0.000321 | 0.0 | 0.0 | 0.0 | 0.938957 | 0.0 | 9999000000.0 | 27385.0 | 33 | 32.172607 | 0.820693 | 0.8107 | 11.2649 | 0.9027713635140617 | 4.04 | 952.0 | 42.160599999999995 | 0.884316 | 2875807.0 | 47120.0 | 0.696602 | 13.093398837377318 | 53.308917516033304 | |||||||||
| NTC_0001_0001_B23MHV2LT4_2 | 62.3 | 31.0 | 0.0 | 0.52 | 0.05 | 0.0 | 0.0 | 1.17 | 0.06 | 0.0 | Skipped | N/A | 488868.0 | 0.945875 | 0.043981 | 467367.0 | 0.000494 | 0.047405 | 0.010116 | 0.952595 | 231.0 | 116.0 | 4728.0 | 2331.0 | 0.000222 | 0.0 | 0.0 | 0.0 | 0.930471 | 0.0 | 9999000000.0 | 20758.0 | 33 | 32.442547 | 0.812585 | 0.25439999999999996 | 16.9522 | 0.5105304235055248 | 0.6 | 1457.0 | 57.1411 | 0.6963 | 48990182.0 | 488868.0 | 0.85615 | 93.69128339970793 | 6.650619219373459 |
5 rows