File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__04da504a--20260522-114016/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 4.7 KB
- Workflow Run
- dev_rna_exp09_10-04da504a
- Published
- May 22, 2026 7:52 PM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 77.2361 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 93.5075 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 92.8981 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9515.224126414 | bclconvert | |
| NTC_0001_0001_B23MHV2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 179938 | bclconvert |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 392753929 | bclconvert |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 763260456 | bclconvert |
| NTC_0001_0001_B23MHV2LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 260893 | bclconvert |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 590717084.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.941342 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.971239 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.048665 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.028761 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 332327275.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 168487428.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17180459.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4989373.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 282580628.0 | star |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005972 | star |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 145.0 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.04 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.02 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.44 | contamination |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592126740.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.941087 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.973531 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.049472 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.026469 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 335870434.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 171035285.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17656326.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4650289.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 284197109.0 | star |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005691 | star |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 162.0 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.02 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.43 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 61.47 | contamination |
| NTC_0001_0001_B23MHV2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 47120.0 | seqtools |
| NTC_0001_0001_B23MHV2LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 488868.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 76 | fusion |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 76 | fusion |
47 rows