#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	6878	21	6878.00	20.94	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	87	3375	78.41	2.04	GT	1.8892	AG	1.7819	23.3603	627	0
FGFR3--TACC3	6	21	6.00	0.02	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	25	3453	1.08	0.01	GA	1.8892	TA	1.5219	0.0204	623	0
FGFR3--TACC3	6	21	6.00	0.02	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	YES	25	3436	1.08	0.01	GA	1.8892	GG	1.7819	0.0204	625	0
FGFR3--TACC3	5	18	5.00	0.01	FGFR3^ENSG00000068078.20	9874	chr4:1806930:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	242	3313	0.10	0.01	CG	1.9219	AG	1.7819	0.0169	632	0
FGFR3--TACC3	3	21	3.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	87	3590	0.28	0.01	GT	1.8892	AG	1.6895	0.0102	1411	0
FGFR3--TACC3	3	13	3.00	0.01	FGFR3^ENSG00000068078.20	9859	chr4:1806915:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	NO	406	3436	0.04	0.00	TA	1.8062	GG	1.7819	0.0102	636	0
TMPRSS2--ERG	6744	0	6744.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	2	122	2248.33	54.84	GT	1.6895	AG	1.9219	22.8357	1104	0
TMPRSS2--ERG	8	0	8.00	0.00	TMPRSS2^ENSG00000184012.14	4656	chr21:41508077:-	ERG^ENSG00000157554.19	28753	chr21:38584943:-	INCL_NON_REF_SPLICE	YES	0	137	9.00	0.07	GC	1.6729	GT	1.8295	0.0271	1106	0
TMPRSS2--ERG	6	0	6.00	0.00	TMPRSS2^ENSG00000184012.14	4653	chr21:41508080:-	ERG^ENSG00000157554.19	28753	chr21:38584943:-	INCL_NON_REF_SPLICE	YES	2	137	2.33	0.05	TG	1.6402	GT	1.8295	0.0203	1106	0
TMPRSS2--ERG	4	0	4.00	0.00	TMPRSS2^ENSG00000184012.14	4656	chr21:41508077:-	ERG^ENSG00000157554.19	36652	chr21:38445508:-	INCL_NON_REF_SPLICE	YES	0	2644	5.00	0.00	GC	1.6729	AC	1.9656	0.0135	298	0
TMPRSS2--ERG	1	0	1.00	0.00	TMPRSS2^ENSG00000184012.14	10965	chr21:41488394:-	ERG^ENSG00000157554.19	36539	chr21:38445621:-	ONLY_REF_SPLICE	YES	0	2768	2.00	0.00	GT	1.8892	AG	1.9656	0.0034	5157	0
TPM3--NTRK1	2413	11	2413.00	10.98	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	9614	56	0.25	42.54	GT	1.9329	AG	1.6895	8.2078	355	0
TPM3--NTRK1	4	11	4.00	0.02	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42071	chr1:156874572:+	INCL_NON_REF_SPLICE	YES	9614	61	0.00	0.26	GT	1.9329	GA	1.7056	0.0136	356	0
CD74--ROS1	1951	11	1951.00	10.91	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	30918	68	0.06	28.45	GT	1.7819	AG	1.7465	6.6431	2407	0
CD74--ROS1	6	11	6.00	0.03	CD74^ENSG00000019582.16	4987	chr5:150404683:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	32886	0	0.00	18.00	AA	1.8295	TT	1.5301	0.0204	2405	0
CD74--ROS1	6	11	6.00	0.03	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	30917	74	0.00	0.24	AC	1.9329	GA	1.8295	0.0204	2408	0
CD74--ROS1	6	3	6.00	0.01	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48779	chr6:117324367:-	INCL_NON_REF_SPLICE	YES	32747	392	0.00	0.03	GG	1.7819	TG	1.7465	0.0203	2384	0
CD74--ROS1	3	11	3.00	0.02	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	30918	0	0.00	15.00	GT	1.7819	TT	1.5301	0.0103	2408	0
CD74--ROS1	5	0	5.00	0.00	CD74^ENSG00000019582.16	2522	chr5:150407148:-	ROS1^ENSG00000047936.11	48727	chr6:117324419:-	INCL_NON_REF_SPLICE	YES	28899	0	0.00	6.00	GT	1.8892	TA	1.4566	0.0169	1162	0
ETV6--NTRK3	1942	13	1942.00	13.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	3227	27	0.61	69.86	GT	1.7819	AG	1.9656	6.6198	1252	0
LMNA--NTRK1	1707	19	1707.00	19.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	5457	509	0.32	3.39	GT	1.7465	AG	1.5058	5.8443	947	0
FGFR3--BAIAP2L1	1624	5	1624.00	4.99	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	89	53	18.11	30.19	GT	1.8892	AG	1.8062	5.5159	1171	0
FGFR3--BAIAP2L1	4	5	4.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16928	chr7:98362431:-	INCL_NON_REF_SPLICE	YES	89	60	0.11	0.16	GT	1.8892	GA	1.8256	0.0135	1170	0
FGFR3--BAIAP2L1	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9877	chr4:1806933:+	BAIAP2L1^ENSG00000006453.14	20631	chr7:98317355:-	INCL_NON_REF_SPLICE	YES	150	210	0.03	0.02	CG	1.8892	GG	1.6729	0.0102	2325	0
NCOA4--RET	1297	7	1297.00	7.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	3089	730	0.42	1.79	GT	1.9086	AG	1.8323	4.4154	5144	0
CCDC6--RET	1216	7	1216.00	7.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2444	730	0.50	1.67	GT	1.8892	AG	1.8323	4.1412	2092	0
KIF5B--RET	1147	3	1147.00	3.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	2081	25	0.55	44.27	GT	1.9656	AG	1.9656	3.894	3178	0
EML4--ALK	1129	1	1129.00	1.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	999	58	1.13	19.17	GT	1.6895	AG	1.9086	3.8263	1550	0
PAX8--PPARG	968	7	968.00	7.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	182	22	5.33	42.43	GT	1.8295	AG	1.9329	3.3014	1923	0
SLC45A3--BRAF	967	0	967.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	2195	484.00	0.44	GT	1.5628	AG	1.7465	3.2743	2599	0
TFG--NTRK1	964	9	964.00	9.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	3385	56	0.29	17.09	GT	1.9329	AG	1.6895	3.2947	883	0
SLC34A2--ROS1	894	39	894.00	38.50	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	1	68	467.00	13.54	GT	1.8892	AG	1.7465	3.1575	999	0
SLC34A2--ROS1	6	31	6.00	0.20	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	1	120	19.00	0.31	GA	1.7465	TG	1.8892	0.021	1002	0
SLC34A2--ROS1	6	28	6.00	0.18	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	1	153	17.50	0.23	GA	1.7465	AT	1.9086	0.0209	1004	0
SLC34A2--ROS1	4	26	4.00	0.11	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58031	chr6:117324409:-	INCL_NON_REF_SPLICE	YES	1	164	15.50	0.19	GA	1.7465	TT	1.8892	0.0139	1005	0
SLC34A2--ROS1	4	0	4.00	0.00	SLC34A2^ENSG00000157765.13	4879	chr4:25662766:+	ROS1^ENSG00000047936.11	59187	chr6:117321316:-	INCL_NON_REF_SPLICE	YES	1191	1821	0.00	0.00	CT	1.8892	GG	1.8892	0.0135	2250	0
EGFR--SEPTIN14	858	8	858.00	8.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	20	36	41.29	23.43	GT	1.8892	AG	1.9899	2.9323	658	0
STX16--NPEPL1	200	7	200.00	6.85	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1478	201	0.14	1.03	GT	1.7968	AG	1.8256	0.7004	1940	0
STX16--NPEPL1	7	3	7.00	0.10	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1540	201	0.01	0.05	GT	1.8062	AG	1.8256	0.024	2729	0
STX16--NPEPL1	4	2	4.00	0.04	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	19290	chr20:58693737:+	ONLY_REF_SPLICE	YES	1478	1189	0.00	0.01	GT	1.7968	AG	1.7819	0.0136	1248	0
STX16--NPEPL1	1	1	1.00	0.00	STX16^ENSG00000124222.22	7080	chr20:58670603:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1634	201	0.00	0.01	GT	1.9086	AG	1.8256	0.0034	2386	0
STX16--NPEPL1	1	1	1.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2619	201	0.00	0.01	GT	1.9899	AG	1.8256	0.0034	1258	0
TLK2--AC240565.1	71	0	71.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	855	47	0.08	1.50	GT	1.8892	AG	1.8892	0.2404	1734	0