File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp09_10-2cae617
- Published
- May 16, 2026 8:39 AM
Content
View in new tab| sample_id | IS_CONTAMINATED | CONTAMINATION_PCT | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | Yes | 62.45 | 9999000000.0 | 550438803.0 | 590716282.0 | 0.005946 | 0.402644 | 352868009.0 | 0.941377 | 0.971244 | 0.04867 | 0.028756 | 332181665.0 | 168416352.0 | 17174070.0 | 4986333.0 | 700.50738 | 316.0 | 0.730791 | 0.637164 | 0.970643 | 0.0 | 158.7 | 143.0 | 0.02 | 1.73 | 0.54 | 0.0 | 0.04 | 5.02 | 0.85 | 0.0 | 216 | 574.489568 | 0.405052 | 0.0 | 97.1794 | 88.91561635155523 | 95.68 | 282584773.0 | 26.7333 | 0.96971 | 76097781557.0 | 590716282.0 | 0.544033 | 98.45271366666667 | 45.607422 | |||||||||
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | Yes | 61.46 | 9999000000.0 | 541573743.0 | 592095494.0 | 0.005693 | 0.395834 | 357723973.0 | 0.941106 | 0.973479 | 0.049471 | 0.026521 | 336656126.0 | 171428256.0 | 17697090.0 | 4670324.0 | 760.129645 | 327.0 | 0.732785 | 0.640241 | 0.97248 | 0.0 | 177.3 | 160.0 | 0.01 | 1.83 | 0.58 | 0.0 | 0.02 | 5.44 | 0.9 | 0.0 | 284 | 799.208588 | 0.3981 | 0.0 | 97.12610000000001 | 89.78739470979893 | 95.99 | 284186876.0 | 28.461100000000002 | 0.971625 | 80123774883.0 | 592095494.0 | 0.549511 | 98.68258233333333 | 35.32052266666666 | |||||||||
| NTC_0001_0001_B23MHV2LT4_1 | Skipped | N/A | 9999000000.0 | 27385.0 | 47120.0 | 0.441469 | 0.458383 | 25521.0 | 0.011128 | 0.064049 | 0.173778 | 0.935951 | 284.0 | 137.0 | 4435.0 | 2002.0 | 0.000321 | 0.0 | 0.0 | 0.0 | 0.938957 | 0.0 | 61.4 | 31.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 33 | 32.172607 | 0.820693 | 0.8107 | 11.2649 | 0.9027713635140617 | 4.04 | 952.0 | 42.160599999999995 | 0.884316 | 2875807.0 | 47120.0 | 0.696602 | 13.093398837377318 | 53.308917516033304 | |||||||||
| NTC_0001_0001_B23MHV2LT4_2 | Skipped | N/A | 9999000000.0 | 20758.0 | 488868.0 | 0.945875 | 0.043981 | 467367.0 | 0.000494 | 0.047405 | 0.010116 | 0.952595 | 231.0 | 116.0 | 4728.0 | 2331.0 | 0.000222 | 0.0 | 0.0 | 0.0 | 0.930471 | 0.0 | 62.3 | 31.0 | 0.0 | 0.52 | 0.05 | 0.0 | 0.0 | 1.17 | 0.06 | 0.0 | 33 | 32.442547 | 0.812585 | 0.25439999999999996 | 16.9522 | 0.5105304235055248 | 0.6 | 1457.0 | 57.1411 | 0.6963 | 48990182.0 | 488868.0 | 0.85615 | 93.69128339970793 | 6.650619219373459 |
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