File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 4.7 KB
- Workflow Run
- dev_rna_exp09_10-2cae617
- Published
- May 16, 2026 8:40 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 77.2361 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 93.5075 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 92.8981 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9515.224126414 | bclconvert | |
| NTC_0001_0001_B23MHV2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 179938 | bclconvert |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 392753929 | bclconvert |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 763260456 | bclconvert |
| NTC_0001_0001_B23MHV2LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 260893 | bclconvert |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 590716282.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.941377 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.971244 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.04867 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.028756 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 332181665.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 168416352.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17174070.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4986333.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 282584773.0 | star |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005946 | star |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 143.0 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.04 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.02 | kallisto |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.45 | contamination |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592095494.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.941106 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.973479 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.049471 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.026521 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 336656126.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 171428256.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 17697090.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 4670324.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 284186876.0 | star |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005693 | star |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 160.0 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.02 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.44 | kallisto |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 61.46 | contamination |
| NTC_0001_0001_B23MHV2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 47120.0 | seqtools |
| NTC_0001_0001_B23MHV2LT4_2 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 488868.0 | seqtools |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 65 | fusion |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 65 | fusion |
47 rows