File Info

Filename
659_gK-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/fusioninspector/659_gK-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
Size
9.2 KB
Workflow Run
dev_rna_exp09_10-3b7a596a
Published
Jun 04, 2026 4:47 PM

Content

View in new tab
#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
LMNA--NTRK1 9056 127 9056.00 125.25 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3598 411 2.55 22.29 GT 1.7465 AG 1.5058 31.0865 947 0
LMNA--NTRK1 115 131 115.00 5.65 LMNA^ENSG00000160789.23 18744 chr1:156134413:+ NTRK1^ENSG00000198400.13 40214 chr1:156874831:+ INCL_NON_REF_SPLICE YES 3707 37 0.07 6.50 CC 1.9329 GA 1.7968 0.4085 553 0
LMNA--NTRK1 70 6 70.00 0.04 LMNA^ENSG00000160789.23 12742 chr1:156115274:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 5129 411 0.02 0.19 GT 1.7465 AG 1.5058 0.2371 458 0
LMNA--NTRK1 5 108 5.00 0.06 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 3596 506 0.03 0.22 TG 1.7465 TC 1.4566 0.0171 949 0
LMNA--NTRK1 15 1 15.00 0.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 43833 chr1:156879999:+ ONLY_REF_SPLICE YES 3598 3420 0.00 0.00 GT 1.7465 AG 1.6895 0.0508 72 2
LMNA--NTRK1 5 2 5.00 0.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 42956 chr1:156879122:+ ONLY_REF_SPLICE YES 3598 2196 0.00 0.00 GT 1.7465 AG 1.9656 0.0169 882 0
LMNA--NTRK1 5 1 5.00 0.00 LMNA^ENSG00000160789.23 17703 chr1:156130743:+ NTRK1^ENSG00000198400.13 40944 chr1:156875561:+ INCL_NON_REF_SPLICE YES 4063 3619 0.00 0.00 CT 1.6729 CC 1.9329 0.0169 1299 0
LMNA--NTRK1 4 0 4.00 0.00 LMNA^ENSG00000160789.23 12658 chr1:156115190:+ NTRK1^ENSG00000198400.13 40345 chr1:156874962:+ INCL_NON_REF_SPLICE YES 5640 1805 0.00 0.00 CC 1.8256 CT 1.9329 0.0135 514 0
LMNA--NTRK1 2 0 2.00 0.00 LMNA^ENSG00000160789.23 12742 chr1:156115274:+ NTRK1^ENSG00000198400.13 42956 chr1:156879122:+ ONLY_REF_SPLICE YES 5129 2196 0.00 0.00 GT 1.7465 AG 1.9656 0.0068 2478 0
LMNA--NTRK1 1 0 1.00 0.00 LMNA^ENSG00000160789.23 12742 chr1:156115274:+ NTRK1^ENSG00000198400.13 43833 chr1:156879999:+ ONLY_REF_SPLICE YES 5129 3420 0.00 0.00 GT 1.7465 AG 1.6895 0.0034 1609 0
PTPRK--RSPO3 796 18 796.00 17.67 PTPRK^ENSG00000152894.15 1358 chr6:128520259:- RSPO3^ENSG00000146374.14 55391 chr6:127148648:+ ONLY_REF_SPLICE YES 1315 264 0.62 3.08 GT 1.8892 AG 1.9329 2.755 1100 0
PTPRK--RSPO3 15 18 15.00 0.33 PTPRK^ENSG00000152894.15 3698 chr6:128491732:- RSPO3^ENSG00000146374.14 55391 chr6:127148648:+ ONLY_REF_SPLICE YES 1116 264 0.03 0.13 GT 1.7056 AG 1.9329 0.0519 1692 0
PTPRK--RSPO3 12 0 12.00 0.00 PTPRK^ENSG00000152894.15 1358 chr6:128520259:- RSPO3^ENSG00000146374.14 56583 chr6:127150426:+ ONLY_REF_SPLICE YES 1315 962 0.01 0.01 GT 1.8892 AG 1.9219 0.0406 125 0
PTPRK--RSPO3 3 0 3.00 0.00 PTPRK^ENSG00000152894.15 1358 chr6:128520259:- RSPO3^ENSG00000146374.14 58928 chr6:127195823:+ ONLY_REF_SPLICE YES 1315 528 0.00 0.01 GT 1.8892 AG 0.9710 0.0102 1145 0
PTPRK--RSPO3 3 0 3.00 0.00 PTPRK^ENSG00000152894.15 1358 chr6:128520259:- RSPO3^ENSG00000146374.14 56666 chr6:127150509:+ INCL_NON_REF_SPLICE YES 1315 1046 0.00 0.00 GT 1.8892 AG 1.9656 0.0102 144 0
PTPRK--RSPO3 1 0 1.00 0.00 PTPRK^ENSG00000152894.15 1358 chr6:128520259:- RSPO3^ENSG00000146374.14 57730 chr6:127155241:+ ONLY_REF_SPLICE YES 1315 1412 0.00 0.00 GT 1.8892 AG 1.9656 0.0034 1143 0
AK3--CDKN2A 232 6 232.00 6.00 AK3^ENSG00000147853.17 2107 chr9:4740937:- CDKN2A^ENSG00000147889.18 18349 chr9:21971208:- ONLY_REF_SPLICE YES 415 72 0.57 3.27 GT 1.7968 AG 1.8892 0.8058 272 0
AK3--CDKN2A 15 0 15.00 0.00 AK3^ENSG00000147853.17 1072 chr9:4741972:- CDKN2A^ENSG00000147889.18 18349 chr9:21971208:- ONLY_REF_SPLICE YES 1 72 8.00 0.22 GT 1.9656 AG 1.8892 0.0508 926 0
AK3--CDKN2A 3 0 3.00 0.00 AK3^ENSG00000147853.17 2107 chr9:4740937:- CDKN2A^ENSG00000147889.18 21315 chr9:21968242:- ONLY_REF_SPLICE YES 415 326 0.01 0.01 GT 1.7968 AG 1.9086 0.0102 2720 0
AK3--CDKN2A 3 0 3.00 0.00 AK3^ENSG00000147853.17 1894 chr9:4741150:- CDKN2A^ENSG00000147889.18 18349 chr9:21971208:- INCL_NON_REF_SPLICE YES 345 72 0.01 0.05 GT 1.6895 AG 1.8892 0.0102 249 0
AK3--CDKN2A 1 0 1.00 0.00 AK3^ENSG00000147853.17 1323 chr9:4741721:- CDKN2A^ENSG00000147889.18 18349 chr9:21971208:- ONLY_REF_SPLICE YES 2 72 0.67 0.03 GT 1.8892 AG 1.8892 0.0034 686 0
FBXO25--AC240565.1 196 0 196.00 0.00 FBXO25^ENSG00000147364.17 7247 chr8:435707:+ AC240565.1^ENSG00000280136.2 27298 chr17:106864:- ONLY_REF_SPLICE YES 398 44 0.49 4.38 GT 1.7819 AG 1.8892 0.6636 7162 0
TVP23C--CDRT4 117 1 117.00 0.72 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 122 12 0.97 9.15 GT 1.9329 AG 1.9899 0.3985 1215 0
TVP23C--CDRT4 37 1 37.00 0.23 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 188 12 0.21 3.00 GT 1.9086 AG 1.9899 0.1261 1774 0
TVP23C--CDRT4 18 0 18.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 122 51 0.15 0.37 GT 1.9329 AG 1.6402 0.0609 137 0
TVP23C--CDRT4 8 1 8.00 0.05 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 31 12 0.31 0.77 GT 1.8892 AG 1.9899 0.0273 1949 0
TVP23C--CDRT4 4 0 4.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 188 51 0.03 0.10 GT 1.9086 AG 1.6402 0.0135 697 0
TLK2--FAM157A 114 1 109.82 1.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 612 46 0.19 2.47 GT 1.8892 AG 1.8892 0.3752 2733 0
CRYZL2P--SEC16B 100 2 100.00 1.68 CRYZL2P^ENSG00000242193.11 8825 chr1:178026155:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- ONLY_REF_SPLICE YES 2 69 34.33 1.47 GT 1.9086 AG 1.5546 0.3443 2589 0
CRYZL2P--SEC16B 13 3 13.00 0.95 CRYZL2P^ENSG00000242193.11 11220 chr1:178022440:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- ONLY_REF_SPLICE YES 3 69 4.25 0.24 GT 1.9656 AG 1.5546 0.0472 2635 0
CRYZL2P--SEC16B 4 3 4.00 0.29 CRYZL2P^ENSG00000242193.11 8837 chr1:178026143:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- INCL_NON_REF_SPLICE NO 2 69 2.67 0.11 GT 1.8323 AG 1.5546 0.0145 2584 0
CRYZL2P--SEC16B 1 3 1.00 0.07 CRYZL2P^ENSG00000242193.11 9991 chr1:178024404:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- ONLY_REF_SPLICE NO 3 69 1.25 0.07 GT 1.6895 AG 1.5546 0.0036 2356 0
CRYZL2P--SEC16B 1 0 1.00 0.00 CRYZL2P^ENSG00000242193.11 8825 chr1:178026155:- SEC16B^ENSG00000120341.18 26248 chr1:177958975:- ONLY_REF_SPLICE YES 2 766 0.67 0.00 GT 1.9086 AG 1.7465 0.0034 3251 0
CRYZL2P--SEC16B 1 0 1.00 0.00 CRYZL2P^ENSG00000242193.11 1257 chr1:178037694:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- ONLY_REF_SPLICE YES 5 69 0.33 0.03 GT 1.8323 AG 1.5546 0.0034 510 0
CRYZL2P--SEC16B 1 0 1.00 0.00 CRYZL2P^ENSG00000242193.11 4246 chr1:178034705:- SEC16B^ENSG00000120341.18 19663 chr1:177968039:- ONLY_REF_SPLICE YES 2 69 0.67 0.03 GT 1.6895 AG 1.5546 0.0034 1888 0
STX16--NPEPL1 82 0 82.00 0.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1212 49 0.07 1.66 GT 1.7968 AG 1.8256 0.2776 1940 0
STX16--NPEPL1 3 0 3.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1106 49 0.00 0.08 GT 1.8062 AG 1.8256 0.0102 2729 0
GUSBP13--NAIP 77 3 77.00 3.00 GUSBP13^ENSG00000198237.8 5633 chr5:69920867:+ NAIP^ENSG00000249437.8 14552 chr5:71003857:- ONLY_REF_SPLICE YES 0 234 81.00 0.34 GT 1.9329 AG 1.8295 0.2709 2864 0
TLK2P1--AC110079.1 67 0 59.18 0.00 TLK2P1^ENSG00000226049.3 1830 chr17:34039043:- AC110079.1^ENSG00000260404.3 8316 chr4:118595912:+ INCL_NON_REF_SPLICE YES 50 36 1.33 1.84 GT 1.7465 AG 1.8892 0.2004 311 0
AC015911.9--SLFN12L 25 3 25.00 3.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 6142 chr17:35480195:- ONLY_REF_SPLICE YES 0 18 29.00 1.53 GT 1.9329 AG 1.8892 0.0948 533 0
AC015911.9--SLFN12L 1 0 1.00 0.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000286065.2 8152 chr17:35478185:- ONLY_REF_SPLICE YES 0 49 2.00 0.04 GT 1.9329 AG 1.9329 0.0034 1380 0
STON1--GTF2A1L 14 2 14.00 1.27 STON1^ENSG00000243244.7 7715 chr2:48591855:+ GTF2A1L^ENSG00000242441.8 16320 chr2:48620851:+ ONLY_REF_SPLICE YES 84 0 0.20 17.00 GT 1.9086 AG 1.7819 0.0517 2355 0
STON1--GTF2A1L 5 2 5.00 0.45 STON1^ENSG00000243244.7 7715 chr2:48591855:+ GTF2A1L^ENSG00000242441.8 16636 chr2:48621167:+ ONLY_REF_SPLICE YES 84 13 0.09 0.57 GT 1.9086 AG 1.9329 0.0184 2369 0
STON1--GTF2A1L 3 2 3.00 0.27 STON1^ENSG00000243244.7 10867 chr2:48597379:+ GTF2A1L^ENSG00000242441.8 16320 chr2:48620851:+ INCL_NON_REF_SPLICE YES 0 0 6.00 6.00 GT 1.9899 AG 1.7819 0.0111 789 0
STON1--GTF2A1L 3 0 3.00 0.00 STON1^ENSG00000243244.7 6512 chr2:48582563:+ GTF2A1L^ENSG00000242441.8 16636 chr2:48621167:+ ONLY_REF_SPLICE YES 74 13 0.05 0.29 GT 1.5546 AG 1.9329 0.0102 1187 0
STON1--GTF2A1L 1 0 1.00 0.00 STON1^ENSG00000243244.7 6512 chr2:48582563:+ GTF2A1L^ENSG00000242441.8 16320 chr2:48620851:+ ONLY_REF_SPLICE YES 74 0 0.03 2.00 GT 1.5546 AG 1.7819 0.0034 1161 0
47 rows