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FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/fusioninspector/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.FusionInspector.fusions.abridged.tsv
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Workflow Run
dev_rna_exp09_10-3b7a596a
Published
Jun 04, 2026 4:52 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 5771 10 5771.00 9.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 115 2975 49.84 1.94 GT 1.8892 AG 1.7819 19.5281 627 0
FGFR3--TACC3 5 9 5.00 0.01 FGFR3^ENSG00000068078.20 9882 chr4:1806938:+ TACC3^ENSG00000013810.20 27596 chr4:1739708:+ INCL_NON_REF_SPLICE YES 12 3106 1.15 0.00 GT 1.8892 AG 1.5058 0.0169 620 0
FGFR3--TACC3 4 8 4.00 0.01 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 27586 chr4:1739698:+ INCL_NON_REF_SPLICE YES 231 2919 0.06 0.00 AC 1.8892 GA 1.7819 0.0135 633 0
FGFR3--TACC3 3 10 3.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 14 3049 0.93 0.00 GA 1.8892 TA 1.5219 0.0101 623 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9259 chr4:1806315:+ TACC3^ENSG00000013810.20 31148 chr4:1744577:+ INCL_NON_REF_SPLICE YES 1151 2955 0.00 0.00 CC 1.8892 GG 1.8256 0.0101 322 0
TMPRSS2--ERG 4846 0 4846.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 6 140 692.43 34.38 GT 1.6895 AG 1.9219 16.3698 1104 0
TPM3--NTRK1 1799 7 1799.00 6.97 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 9475 57 0.19 31.16 GT 1.9329 AG 1.6895 6.1005 355 0
TPM3--NTRK1 6 7 6.00 0.02 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42072 chr1:156874573:+ INCL_NON_REF_SPLICE YES 9475 63 0.00 0.22 GT 1.9329 AC 1.7819 0.0204 357 0
TPM3--NTRK1 7 1 7.00 0.00 TPM3^ENSG00000143549.21 13106 chr1:154170683:- NTRK1^ENSG00000198400.13 42068 chr1:156874569:+ INCL_NON_REF_SPLICE YES 9960 20 0.00 0.43 AG 1.4566 AC 1.6895 0.0236 434 0
FGFR3--BAIAP2L1 1667 2 1667.00 2.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 116 62 14.27 26.51 GT 1.8892 AG 1.8062 5.6379 1171 0
FGFR3--BAIAP2L1 3 2 3.00 0.00 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ BAIAP2L1^ENSG00000006453.14 16924 chr7:98362435:- INCL_NON_REF_SPLICE YES 232 61 0.03 0.10 AC 1.8892 GG 1.8062 0.0101 1172 0
LMNA--NTRK1 1629 6 1629.00 6.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 4589 427 0.36 3.82 GT 1.7465 AG 1.5058 5.5231 947 0
CD74--ROS1 1468 6 1468.00 5.91 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 32658 42 0.05 34.30 GT 1.7819 AG 1.7465 4.9789 2407 0
CD74--ROS1 12 6 12.00 0.05 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 32657 45 0.00 0.41 AC 1.9329 GA 1.8295 0.0407 2408 0
CD74--ROS1 7 3 7.00 0.01 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48735 chr6:117324411:- INCL_NON_REF_SPLICE YES 32657 61 0.00 0.18 AC 1.9329 GA 1.8892 0.0236 2407 0
CD74--ROS1 4 3 4.00 0.01 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48734 chr6:117324412:- INCL_NON_REF_SPLICE YES 32657 57 0.00 0.14 AC 1.9329 TG 1.8892 0.0135 2407 0
CD74--ROS1 3 6 3.00 0.01 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 32658 4 0.00 2.00 GT 1.7819 TT 1.5301 0.0101 2408 0
CD74--ROS1 3 6 3.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48733 chr6:117324413:- INCL_NON_REF_SPLICE YES 34542 51 0.00 0.19 GG 1.7819 AT 1.8892 0.0101 2405 0
CD74--ROS1 4 0 4.00 0.00 CD74^ENSG00000019582.16 3412 chr5:150406258:- ROS1^ENSG00000047936.11 51075 chr6:117319906:- INCL_NON_REF_SPLICE YES 28101 1582 0.00 0.00 TG 1.8892 TC 1.5656 0.0135 391 0
ETV6--NTRK3 1401 5 1401.00 4.99 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 2427 17 0.58 78.17 GT 1.7819 AG 1.9656 4.7495 1252 0
ETV6--NTRK3 5 4 5.00 0.01 ETV6^ENSG00000139083.11 11231 chr12:11869963:+ NTRK3^ENSG00000140538.16 46234 chr15:87940757:- INCL_NON_REF_SPLICE NO 2544 0 0.00 10.00 TA 1.9656 CT 1.9329 0.0169 1256 0
ETV6--NTRK3 3 0 3.00 0.00 ETV6^ENSG00000139083.11 11144 chr12:11869876:+ NTRK3^ENSG00000140538.16 46307 chr15:87940684:- INCL_NON_REF_SPLICE YES 3698 130 0.00 0.03 TC 1.7819 GG 1.8256 0.0101 1183 0
NCOA4--RET 1268 6 1268.00 6.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 2426 570 0.53 2.23 GT 1.9086 AG 1.8323 4.3036 5144 0
KIF5B--RET 1147 11 1147.00 10.97 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1671 33 0.69 34.09 GT 1.9656 AG 1.9656 3.9117 3178 0
KIF5B--RET 3 10 3.00 0.03 KIF5B^ENSG00000170759.11 19979 chr10:32017141:- RET^ENSG00000165731.20 38836 chr10:43114484:+ INCL_NON_REF_SPLICE NO 1671 38 0.01 0.36 TA 1.9656 CC 1.9656 0.0102 3175 0
PAX8--PPARG 1091 1 1091.00 1.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 92 16 11.75 64.29 GT 1.8295 AG 1.9329 3.6888 1923 0
CCDC6--RET 963 4 963.00 4.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1891 570 0.51 1.70 GT 1.8892 AG 1.8323 3.2665 2092 0
SLC45A3--BRAF 844 0 844.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1365 845.00 0.62 GT 1.5628 AG 1.7465 2.851 2599 0
EGFR--SEPTIN14 703 9 703.00 9.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 17 49 39.61 14.26 GT 1.8892 AG 1.9899 2.4051 658 0
EML4--ALK 705 0 705.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 810 39 0.87 17.65 GT 1.6895 AG 1.9086 2.3815 1550 0
SLC34A2--ROS1 656 19 656.00 18.80 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 42 676.00 15.72 GT 1.8892 AG 1.7465 2.2795 999 0
SLC34A2--ROS1 6 14 6.00 0.13 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 57 21.00 0.36 GA 1.7465 TG 1.8892 0.0207 1002 0
SLC34A2--ROS1 4 13 4.00 0.08 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 0 76 18.00 0.23 GA 1.7465 AT 1.9086 0.0138 1004 0
TFG--NTRK1 540 2 540.00 2.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2516 57 0.22 9.36 GT 1.9329 AG 1.6895 1.8309 883 0
TFG--NTRK1 11 0 11.00 0.00 TFG^ENSG00000114354.15 6234 chr3:100728860:+ NTRK1^ENSG00000198400.13 37666 chr1:156874582:+ INCL_NON_REF_SPLICE YES 2182 109 0.01 0.11 AA 1.9086 GC 1.9329 0.0372 708 0
STX16--NPEPL1 195 6 195.00 5.89 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1121 145 0.18 1.38 GT 1.7968 AG 1.8256 0.6786 1940 0
STX16--NPEPL1 12 2 12.00 0.11 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1136 145 0.01 0.10 GT 1.8062 AG 1.8256 0.0409 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2249 145 0.00 0.01 GT 1.9899 AG 1.8256 0.0034 1258 0
TLK2--FAM157A 73 0 73.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 703 32 0.11 2.24 GT 1.8892 AG 1.8892 0.2466 2733 0
TVP23C--CDRT4 62 4 62.00 3.71 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 83 12 0.80 5.15 GT 1.9329 AG 1.9899 0.2219 1215 0
TVP23C--CDRT4 32 0 32.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 531 12 0.06 2.54 GT 1.8323 AG 1.9899 0.1081 2126 0
TVP23C--CDRT4 26 1 26.00 0.29 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 19 12 1.40 2.15 GT 1.8892 AG 1.9899 0.0888 1949 0
TVP23C--CDRT4 15 0 15.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 83 51 0.19 0.31 GT 1.9329 AG 1.6402 0.0507 137 0
TVP23C--CDRT4 6 0 6.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 531 51 0.01 0.13 GT 1.8323 AG 1.6402 0.0203 1363 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- ONLY_REF_SPLICE YES 531 0 0.00 2.00 GT 1.8323 AG 1.8892 0.0034 1044 0
SNU13--LLPH 42 0 42.00 0.00 SNU13^ENSG00000100138.15 6709 chr22:41680244:- LLPH^ENSG00000139233.7 14346 chr12:66129113:- ONLY_REF_SPLICE YES 2256 399 0.02 0.11 GT 1.7056 AG 1.8295 0.1419 2440 0
SOGA3--KIAA0408 19 1 19.00 1.00 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- INCL_NON_REF_SPLICE YES 0 14 21.00 1.40 GT 1.6895 AG 1.7465 0.0676 176 0
48 rows