#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	5771	10	5771.00	9.98	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	115	2975	49.84	1.94	GT	1.8892	AG	1.7819	19.5281	627	0
FGFR3--TACC3	5	9	5.00	0.01	FGFR3^ENSG00000068078.20	9882	chr4:1806938:+	TACC3^ENSG00000013810.20	27596	chr4:1739708:+	INCL_NON_REF_SPLICE	YES	12	3106	1.15	0.00	GT	1.8892	AG	1.5058	0.0169	620	0
FGFR3--TACC3	4	8	4.00	0.01	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	TACC3^ENSG00000013810.20	27586	chr4:1739698:+	INCL_NON_REF_SPLICE	YES	231	2919	0.06	0.00	AC	1.8892	GA	1.7819	0.0135	633	0
FGFR3--TACC3	3	10	3.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	14	3049	0.93	0.00	GA	1.8892	TA	1.5219	0.0101	623	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9259	chr4:1806315:+	TACC3^ENSG00000013810.20	31148	chr4:1744577:+	INCL_NON_REF_SPLICE	YES	1151	2955	0.00	0.00	CC	1.8892	GG	1.8256	0.0101	322	0
TMPRSS2--ERG	4846	0	4846.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	6	140	692.43	34.38	GT	1.6895	AG	1.9219	16.3698	1104	0
TPM3--NTRK1	1799	7	1799.00	6.97	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	9475	57	0.19	31.16	GT	1.9329	AG	1.6895	6.1005	355	0
TPM3--NTRK1	6	7	6.00	0.02	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42072	chr1:156874573:+	INCL_NON_REF_SPLICE	YES	9475	63	0.00	0.22	GT	1.9329	AC	1.7819	0.0204	357	0
TPM3--NTRK1	7	1	7.00	0.00	TPM3^ENSG00000143549.21	13106	chr1:154170683:-	NTRK1^ENSG00000198400.13	42068	chr1:156874569:+	INCL_NON_REF_SPLICE	YES	9960	20	0.00	0.43	AG	1.4566	AC	1.6895	0.0236	434	0
FGFR3--BAIAP2L1	1667	2	1667.00	2.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	116	62	14.27	26.51	GT	1.8892	AG	1.8062	5.6379	1171	0
FGFR3--BAIAP2L1	3	2	3.00	0.00	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	BAIAP2L1^ENSG00000006453.14	16924	chr7:98362435:-	INCL_NON_REF_SPLICE	YES	232	61	0.03	0.10	AC	1.8892	GG	1.8062	0.0101	1172	0
LMNA--NTRK1	1629	6	1629.00	6.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	4589	427	0.36	3.82	GT	1.7465	AG	1.5058	5.5231	947	0
CD74--ROS1	1468	6	1468.00	5.91	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	32658	42	0.05	34.30	GT	1.7819	AG	1.7465	4.9789	2407	0
CD74--ROS1	12	6	12.00	0.05	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	32657	45	0.00	0.41	AC	1.9329	GA	1.8295	0.0407	2408	0
CD74--ROS1	7	3	7.00	0.01	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48735	chr6:117324411:-	INCL_NON_REF_SPLICE	YES	32657	61	0.00	0.18	AC	1.9329	GA	1.8892	0.0236	2407	0
CD74--ROS1	4	3	4.00	0.01	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48734	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	32657	57	0.00	0.14	AC	1.9329	TG	1.8892	0.0135	2407	0
CD74--ROS1	3	6	3.00	0.01	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	YES	32658	4	0.00	2.00	GT	1.7819	TT	1.5301	0.0101	2408	0
CD74--ROS1	3	6	3.00	0.01	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48733	chr6:117324413:-	INCL_NON_REF_SPLICE	YES	34542	51	0.00	0.19	GG	1.7819	AT	1.8892	0.0101	2405	0
CD74--ROS1	4	0	4.00	0.00	CD74^ENSG00000019582.16	3412	chr5:150406258:-	ROS1^ENSG00000047936.11	51075	chr6:117319906:-	INCL_NON_REF_SPLICE	YES	28101	1582	0.00	0.00	TG	1.8892	TC	1.5656	0.0135	391	0
ETV6--NTRK3	1401	5	1401.00	4.99	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	2427	17	0.58	78.17	GT	1.7819	AG	1.9656	4.7495	1252	0
ETV6--NTRK3	5	4	5.00	0.01	ETV6^ENSG00000139083.11	11231	chr12:11869963:+	NTRK3^ENSG00000140538.16	46234	chr15:87940757:-	INCL_NON_REF_SPLICE	NO	2544	0	0.00	10.00	TA	1.9656	CT	1.9329	0.0169	1256	0
ETV6--NTRK3	3	0	3.00	0.00	ETV6^ENSG00000139083.11	11144	chr12:11869876:+	NTRK3^ENSG00000140538.16	46307	chr15:87940684:-	INCL_NON_REF_SPLICE	YES	3698	130	0.00	0.03	TC	1.7819	GG	1.8256	0.0101	1183	0
NCOA4--RET	1268	6	1268.00	6.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	2426	570	0.53	2.23	GT	1.9086	AG	1.8323	4.3036	5144	0
KIF5B--RET	1147	11	1147.00	10.97	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1671	33	0.69	34.09	GT	1.9656	AG	1.9656	3.9117	3178	0
KIF5B--RET	3	10	3.00	0.03	KIF5B^ENSG00000170759.11	19979	chr10:32017141:-	RET^ENSG00000165731.20	38836	chr10:43114484:+	INCL_NON_REF_SPLICE	NO	1671	38	0.01	0.36	TA	1.9656	CC	1.9656	0.0102	3175	0
PAX8--PPARG	1091	1	1091.00	1.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	92	16	11.75	64.29	GT	1.8295	AG	1.9329	3.6888	1923	0
CCDC6--RET	963	4	963.00	4.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1891	570	0.51	1.70	GT	1.8892	AG	1.8323	3.2665	2092	0
SLC45A3--BRAF	844	0	844.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	1365	845.00	0.62	GT	1.5628	AG	1.7465	2.851	2599	0
EGFR--SEPTIN14	703	9	703.00	9.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	17	49	39.61	14.26	GT	1.8892	AG	1.9899	2.4051	658	0
EML4--ALK	705	0	705.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	810	39	0.87	17.65	GT	1.6895	AG	1.9086	2.3815	1550	0
SLC34A2--ROS1	656	19	656.00	18.80	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	42	676.00	15.72	GT	1.8892	AG	1.7465	2.2795	999	0
SLC34A2--ROS1	6	14	6.00	0.13	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	57	21.00	0.36	GA	1.7465	TG	1.8892	0.0207	1002	0
SLC34A2--ROS1	4	13	4.00	0.08	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	0	76	18.00	0.23	GA	1.7465	AT	1.9086	0.0138	1004	0
TFG--NTRK1	540	2	540.00	2.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	2516	57	0.22	9.36	GT	1.9329	AG	1.6895	1.8309	883	0
TFG--NTRK1	11	0	11.00	0.00	TFG^ENSG00000114354.15	6234	chr3:100728860:+	NTRK1^ENSG00000198400.13	37666	chr1:156874582:+	INCL_NON_REF_SPLICE	YES	2182	109	0.01	0.11	AA	1.9086	GC	1.9329	0.0372	708	0
STX16--NPEPL1	195	6	195.00	5.89	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1121	145	0.18	1.38	GT	1.7968	AG	1.8256	0.6786	1940	0
STX16--NPEPL1	12	2	12.00	0.11	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1136	145	0.01	0.10	GT	1.8062	AG	1.8256	0.0409	2729	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2249	145	0.00	0.01	GT	1.9899	AG	1.8256	0.0034	1258	0
TLK2--FAM157A	73	0	73.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	FAM157A^ENSG00000236438.7	45187	chr3:198180755:+	ONLY_REF_SPLICE	YES	703	32	0.11	2.24	GT	1.8892	AG	1.8892	0.2466	2733	0
TVP23C--CDRT4	62	4	62.00	3.71	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	INCL_NON_REF_SPLICE	YES	83	12	0.80	5.15	GT	1.9329	AG	1.9899	0.2219	1215	0
TVP23C--CDRT4	32	0	32.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	531	12	0.06	2.54	GT	1.8323	AG	1.9899	0.1081	2126	0
TVP23C--CDRT4	26	1	26.00	0.29	TVP23C^ENSG00000175106.17	12676	chr17:15516419:-	CDRT4^ENSG00000239704.11	22624	chr17:15440285:-	ONLY_REF_SPLICE	YES	19	12	1.40	2.15	GT	1.8892	AG	1.9899	0.0888	1949	0
TVP23C--CDRT4	15	0	15.00	0.00	TVP23C^ENSG00000175106.17	14926	chr17:15503098:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	INCL_NON_REF_SPLICE	YES	83	51	0.19	0.31	GT	1.9329	AG	1.6402	0.0507	137	0
TVP23C--CDRT4	6	0	6.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	23702	chr17:15438200:-	ONLY_REF_SPLICE	YES	531	51	0.01	0.13	GT	1.8323	AG	1.6402	0.0203	1363	0
TVP23C--CDRT4	1	0	1.00	0.00	TVP23C^ENSG00000175106.17	7982	chr17:15540433:-	CDRT4^ENSG00000239704.11	21051	chr17:15453085:-	ONLY_REF_SPLICE	YES	531	0	0.00	2.00	GT	1.8323	AG	1.8892	0.0034	1044	0
SNU13--LLPH	42	0	42.00	0.00	SNU13^ENSG00000100138.15	6709	chr22:41680244:-	LLPH^ENSG00000139233.7	14346	chr12:66129113:-	ONLY_REF_SPLICE	YES	2256	399	0.02	0.11	GT	1.7056	AG	1.8295	0.1419	2440	0
SOGA3--KIAA0408	19	1	19.00	1.00	SOGA3^ENSG00000214338.10	11088	chr6:127473080:-	KIAA0408^ENSG00000189367.15	15731	chr6:127454101:-	INCL_NON_REF_SPLICE	YES	0	14	21.00	1.40	GT	1.6895	AG	1.7465	0.0676	176	0