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FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/fusioninspector/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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11.2 KB
Workflow Run
dev_rna_exp09_10-3b7a596a
Published
Jun 04, 2026 4:58 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6905 21 6905.00 20.94 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 87 3364 78.72 2.06 GT 1.8892 AG 1.7819 23.4516 627 0
FGFR3--TACC3 7 21 7.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 26 3442 1.07 0.01 GA 1.8892 TA 1.5219 0.0238 623 0
FGFR3--TACC3 6 21 6.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 26 3423 1.04 0.01 GA 1.8892 GG 1.7819 0.0204 625 0
FGFR3--TACC3 5 18 5.00 0.01 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 241 3302 0.10 0.01 CG 1.9219 AG 1.7819 0.0169 632 0
FGFR3--TACC3 3 21 3.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 87 3578 0.28 0.01 GT 1.8892 AG 1.6895 0.0102 1411 0
TMPRSS2--ERG 6771 0 6771.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 2 120 2257.33 55.97 GT 1.6895 AG 1.9219 22.9269 1104 0
TMPRSS2--ERG 8 0 8.00 0.00 TMPRSS2^ENSG00000184012.14 4656 chr21:41508077:- ERG^ENSG00000157554.19 28753 chr21:38584943:- INCL_NON_REF_SPLICE YES 0 135 9.00 0.07 GC 1.6729 GT 1.8295 0.0271 1106 0
TMPRSS2--ERG 6 0 6.00 0.00 TMPRSS2^ENSG00000184012.14 4653 chr21:41508080:- ERG^ENSG00000157554.19 28753 chr21:38584943:- INCL_NON_REF_SPLICE YES 2 135 2.33 0.05 TG 1.6402 GT 1.8295 0.0203 1106 0
TMPRSS2--ERG 5 0 5.00 0.00 TMPRSS2^ENSG00000184012.14 4656 chr21:41508077:- ERG^ENSG00000157554.19 36652 chr21:38445508:- INCL_NON_REF_SPLICE YES 0 2653 6.00 0.00 GC 1.6729 AC 1.9656 0.0169 298 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 10965 chr21:41488394:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 0 2777 2.00 0.00 GT 1.8892 AG 1.9656 0.0034 5157 0
TPM3--NTRK1 2407 10 2407.00 9.99 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 9642 57 0.25 41.69 GT 1.9329 AG 1.6895 8.184 355 0
TPM3--NTRK1 3 10 3.00 0.01 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42071 chr1:156874572:+ INCL_NON_REF_SPLICE YES 9642 63 0.00 0.22 GT 1.9329 GA 1.7056 0.0102 356 0
CD74--ROS1 1968 11 1968.00 10.92 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 30922 69 0.06 28.29 GT 1.7819 AG 1.7465 6.7007 2407 0
CD74--ROS1 6 11 6.00 0.03 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 32885 0 0.00 18.00 AA 1.8295 TT 1.5301 0.0204 2405 0
CD74--ROS1 6 11 6.00 0.03 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 30919 75 0.00 0.24 AC 1.9329 GA 1.8295 0.0204 2408 0
CD74--ROS1 6 3 6.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 32743 384 0.00 0.03 GG 1.7819 TG 1.7465 0.0203 2384 0
CD74--ROS1 4 0 4.00 0.00 CD74^ENSG00000019582.16 2522 chr5:150407148:- ROS1^ENSG00000047936.11 48727 chr6:117324419:- INCL_NON_REF_SPLICE YES 28977 0 0.00 5.00 GT 1.8892 TA 1.4566 0.0135 1162 0
ETV6--NTRK3 1931 13 1931.00 13.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3198 30 0.61 62.74 GT 1.7819 AG 1.9656 6.5825 1252 0
LMNA--NTRK1 1668 22 1668.00 22.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 5461 506 0.31 3.34 GT 1.7465 AG 1.5058 5.7224 947 0
FGFR3--BAIAP2L1 1640 6 1640.00 5.99 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 89 53 18.30 30.50 GT 1.8892 AG 1.8062 5.5734 1171 0
FGFR3--BAIAP2L1 4 6 4.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16928 chr7:98362431:- INCL_NON_REF_SPLICE YES 89 61 0.12 0.18 GT 1.8892 GA 1.8256 0.0135 1170 0
FGFR3--BAIAP2L1 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9877 chr4:1806933:+ BAIAP2L1^ENSG00000006453.14 20631 chr7:98317355:- INCL_NON_REF_SPLICE YES 149 194 0.03 0.02 CG 1.8892 GG 1.6729 0.0102 2325 0
NCOA4--RET 1311 6 1311.00 6.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3095 736 0.43 1.79 GT 1.9086 AG 1.8323 4.4594 5144 0
CCDC6--RET 1199 8 1199.00 8.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2450 736 0.49 1.64 GT 1.8892 AG 1.8323 4.087 2092 0
KIF5B--RET 1145 3 1145.00 3.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 2098 25 0.55 44.19 GT 1.9656 AG 1.9656 3.8872 3178 0
EML4--ALK 1132 1 1132.00 1.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 1003 55 1.13 20.25 GT 1.6895 AG 1.9086 3.8364 1550 0
SLC45A3--BRAF 965 0 965.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 1 2190 483.00 0.44 GT 1.5628 AG 1.7465 3.2675 2599 0
TFG--NTRK1 955 11 955.00 11.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 3403 57 0.28 16.67 GT 1.9329 AG 1.6895 3.2709 883 0
PAX8--PPARG 950 5 950.00 5.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 189 24 5.03 38.24 GT 1.8295 AG 1.9329 3.2336 1923 0
SLC34A2--ROS1 890 38 890.00 37.51 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 1 69 464.50 13.27 GT 1.8892 AG 1.7465 3.1406 999 0
SLC34A2--ROS1 6 30 6.00 0.20 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 1 119 18.50 0.31 GA 1.7465 TG 1.8892 0.021 1002 0
SLC34A2--ROS1 6 28 6.00 0.18 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 1 153 17.50 0.23 GA 1.7465 AT 1.9086 0.0209 1004 0
SLC34A2--ROS1 4 26 4.00 0.11 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58031 chr6:117324409:- INCL_NON_REF_SPLICE YES 1 166 15.50 0.19 GA 1.7465 TT 1.8892 0.0139 1005 0
SLC34A2--ROS1 5 0 5.00 0.00 SLC34A2^ENSG00000157765.13 4879 chr4:25662766:+ ROS1^ENSG00000047936.11 59187 chr6:117321316:- INCL_NON_REF_SPLICE YES 1178 1796 0.01 0.00 CT 1.8892 GG 1.8892 0.0169 2250 0
EGFR--SEPTIN14 868 5 868.00 5.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 18 36 46.00 23.62 GT 1.8892 AG 1.9899 2.956 658 0
AC015911.9--SLFN12L 320 42 320.00 37.46 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 6142 chr17:35480195:- ONLY_REF_SPLICE YES 0 444 363.00 0.82 GT 1.9329 AG 1.8892 1.2103 533 0
AC015911.9--SLFN12L 149 15 149.00 4.49 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000286065.2 8152 chr17:35478185:- ONLY_REF_SPLICE YES 0 587 165.00 0.28 GT 1.9329 AG 1.9329 0.5197 1380 0
AC015911.9--SLFN12L 8 3 8.00 0.05 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 9263 chr17:35475485:- ONLY_REF_SPLICE YES 0 717 12.00 0.02 GT 1.9329 AG 1.7968 0.0273 508 0
STX16--NPEPL1 197 8 197.00 7.86 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1463 199 0.14 1.03 GT 1.7968 AG 1.8256 0.6937 1940 0
STX16--NPEPL1 6 3 6.00 0.09 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1537 199 0.01 0.05 GT 1.8062 AG 1.8256 0.0206 2729 0
STX16--NPEPL1 4 2 4.00 0.04 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 19290 chr20:58693737:+ ONLY_REF_SPLICE YES 1463 1157 0.00 0.01 GT 1.7968 AG 1.7819 0.0136 1248 0
STX16--NPEPL1 1 1 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2597 199 0.00 0.01 GT 1.9899 AG 1.8256 0.0034 1258 0
STX16--NPEPL1 1 1 1.00 0.00 STX16^ENSG00000124222.22 7080 chr20:58670603:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1636 199 0.00 0.01 GT 1.9086 AG 1.8256 0.0034 2386 0
STX16--NPEPL1 1 1 1.00 0.00 STX16^ENSG00000124222.22 1886 chr20:58652138:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2698 199 0.00 0.01 GT 1.9329 AG 1.8256 0.0034 1285 0
TLK2--AC240565.1 74 0 74.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 838 44 0.09 1.67 GT 1.8892 AG 1.8892 0.2506 1734 0
TVP23C--CDRT4 61 1 61.00 0.79 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 172 12 0.36 4.85 GT 1.9329 AG 1.9899 0.2092 1215 0
TVP23C--CDRT4 40 0 40.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 679 12 0.06 3.15 GT 1.8323 AG 1.9899 0.1354 2126 0
TVP23C--CDRT4 16 1 16.00 0.21 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 31 12 0.56 1.38 GT 1.8892 AG 1.9899 0.0549 1949 0
TVP23C--CDRT4 13 0 13.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 172 55 0.08 0.25 GT 1.9329 AG 1.6402 0.044 137 0
TVP23C--CDRT4 9 0 9.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 679 55 0.01 0.18 GT 1.8323 AG 1.6402 0.0305 1363 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- ONLY_REF_SPLICE YES 679 1 0.00 1.00 GT 1.8323 AG 1.8892 0.0034 1044 0
SOGA3--KIAA0408 21 2 21.00 1.45 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15731 chr6:127454101:- INCL_NON_REF_SPLICE YES 0 12 24.00 1.85 GT 1.6895 AG 1.7465 0.076 176 0
SOGA3--KIAA0408 8 2 8.00 0.55 SOGA3^ENSG00000214338.10 11088 chr6:127473080:- KIAA0408^ENSG00000189367.15 15745 chr6:127454087:- INCL_NON_REF_SPLICE YES 0 19 11.00 0.55 GT 1.6895 AG 1.9656 0.029 183 0
SOGA3--KIAA0408 2 0 2.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 21815 chr6:127444282:- ONLY_REF_SPLICE YES 184 399 0.02 0.01 GT 1.9656 AG 1.9899 0.0068 304 0
SOGA3--KIAA0408 1 0 1.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 19482 chr6:127447740:- ONLY_REF_SPLICE YES 184 284 0.01 0.01 GT 1.9656 AG 1.9329 0.0034 575 0
SOGA3--KIAA0408 1 0 1.00 0.00 SOGA3^ENSG00000214338.10 9776 chr6:127475293:- KIAA0408^ENSG00000189367.15 17951 chr6:127450352:- ONLY_REF_SPLICE YES 184 208 0.01 0.01 GT 1.9656 AG 1.9656 0.0034 1344 0
57 rows