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659_eZ4-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/fusioninspector/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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13.8 KB
Workflow Run
dev_rna_exp09_10-3b7a596a
Published
Jun 04, 2026 5:07 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
TMPRSS2--ERG 9895 0 9895.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 2613 948 3.79 10.43 GT 1.6895 AG 1.9656 35.7228 350 0
TMPRSS2--ERG 1361 9 1361.00 8.48 TMPRSS2^ENSG00000184012.14 4783 chr21:41507950:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 3389 948 0.40 1.44 GT 1.3996 AG 1.9656 4.9441 251 0
TMPRSS2--ERG 75 10 75.00 1.47 TMPRSS2^ENSG00000184012.14 6288 chr21:41506445:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 2467 948 0.03 0.09 GT 1.8892 AG 1.9656 0.2761 1348 0
TMPRSS2--ERG 38 0 38.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 2613 4736 0.01 0.01 GT 1.6895 AG 1.9899 0.1372 1057 0
TMPRSS2--ERG 14 0 14.00 0.00 TMPRSS2^ENSG00000184012.14 4646 chr21:41508087:- ERG^ENSG00000157554.19 36535 chr21:38445625:- INCL_NON_REF_SPLICE YES 2652 734 0.01 0.02 CG 1.5628 AT 1.9899 0.0505 357 0
TMPRSS2--ERG 12 0 12.00 0.00 TMPRSS2^ENSG00000184012.14 4783 chr21:41507950:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 3389 4736 0.00 0.00 GT 1.3996 AG 1.9899 0.0433 1028 0
TMPRSS2--ERG 11 0 11.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 36543 chr21:38445617:- INCL_NON_REF_SPLICE YES 2613 1050 0.00 0.01 GT 1.6895 AG 1.9219 0.0397 347 0
TMPRSS2--ERG 4 9 4.00 0.02 TMPRSS2^ENSG00000184012.14 5750 chr21:41506983:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 2549 948 0.01 0.01 GT 1.4295 AG 1.9656 0.0145 820 0
TMPRSS2--ERG 3 9 3.00 0.02 TMPRSS2^ENSG00000184012.14 5035 chr21:41507698:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE NO 2747 948 0.00 0.01 GT 1.7056 AG 1.9656 0.0109 209 0
TMPRSS2--ERG 4 0 4.00 0.00 TMPRSS2^ENSG00000184012.14 3574 chr21:41511863:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 5 948 0.83 0.01 GT 1.9086 AG 1.9656 0.0144 214 0
TMPRSS2--ERG 4 0 4.00 0.00 TMPRSS2^ENSG00000184012.14 4636 chr21:41508097:- ERG^ENSG00000157554.19 35526 chr21:38449034:- INCL_NON_REF_SPLICE YES 2365 361 0.00 0.01 GC 1.1589 CA 1.7232 0.0144 1244 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 43911 chr21:38392444:- ONLY_REF_SPLICE YES 2613 4030 0.00 0.00 GT 1.6895 AG 1.9086 0.0036 2815 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 38909 chr21:38403709:- ONLY_REF_SPLICE YES 2613 3190 0.00 0.00 GT 1.6895 AG 1.9899 0.0036 1071 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 3574 chr21:41511863:- ERG^ENSG00000157554.19 37757 chr21:38423561:- ONLY_REF_SPLICE YES 5 4736 0.33 0.00 GT 1.9086 AG 1.9899 0.0036 995 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 2144 chr21:41529973:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 0 948 2.00 0.00 GT 1.9656 AG 1.9656 0.0036 1045 0
CORO1C--CRY1 319 9 319.00 8.99 CORO1C^ENSG00000110880.11 7684 chr12:108678272:- CRY1^ENSG00000008405.12 29518 chr12:107005248:- ONLY_REF_SPLICE YES 655 306 0.50 1.07 GT 1.9656 AG 1.8892 1.1842 2540 0
CORO1C--CRY1 1 3 1.00 0.01 CORO1C^ENSG00000110880.11 5334 chr12:108701124:- CRY1^ENSG00000008405.12 29518 chr12:107005248:- ONLY_REF_SPLICE NO 1123 306 0.00 0.02 GT 1.8295 AG 1.8892 0.0036 583 0
KAT6A--TAC4 304 8 304.00 8.00 KAT6A^ENSG00000083168.11 18906 chr8:41955296:- TAC4^ENSG00000176358.15 43272 chr17:49844157:- ONLY_REF_SPLICE YES 312 244 1.00 1.28 GT 1.8295 AG 1.7056 1.1264 2563 0
KAT6A--TAC4 7 0 7.00 0.00 KAT6A^ENSG00000083168.11 12901 chr8:41974704:- TAC4^ENSG00000176358.15 43272 chr17:49844157:- ONLY_REF_SPLICE YES 382 244 0.02 0.03 GT 1.8062 AG 1.7056 0.0253 1035 0
PCDHGB2--PCDHGA10 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA10^ENSG00000253846.2 12051 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 336 274.00 0.81 GT 1.7819 AG 1.3383 0.1232 1890 0
PCDHGB2--PCDHGA11 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA11^ENSG00000253873.6 11222 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 10 274.00 24.91 GT 1.7819 AG 1.3383 0.1232 1018 0
PCDHGB2--PCDHGA12 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA12^ENSG00000253159.3 10305 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 55 274.00 4.89 GT 1.7819 AG 1.3383 0.1232 1413 0
PCDHGB2--PCDHGA8 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA8^ENSG00000253767.3 14069 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 32 274.00 8.30 GT 1.7819 AG 1.3383 0.1232 1419 0
PCDHGB2--PCDHGA9 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGA9^ENSG00000261934.2 10157 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 18 274.00 14.42 GT 1.7819 AG 1.3383 0.1232 1493 0
PCDHGB2--PCDHGC3 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC3^ENSG00000240184.7 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 357 274.00 0.77 GT 1.7819 AG 1.3383 0.1232 1210 0
PCDHGB2--PCDHGC4 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC4^ENSG00000242419.5 10382 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 0 274.00 274.00 GT 1.7819 AG 1.3383 0.1232 1585 0
PCDHGB2--PCDHGC5 269 4 33.62 0.50 PCDHGB2^ENSG00000253910.2 3515 chr5:141362556:+ PCDHGC5^ENSG00000240764.4 10438 chr5:141494807:+ INCL_NON_REF_SPLICE YES 0 4 274.00 54.80 GT 1.7819 AG 1.3383 0.1232 1206 0
FBXO25--AC240565.1 257 0 257.00 0.00 FBXO25^ENSG00000147364.17 7247 chr8:435707:+ AC240565.1^ENSG00000280136.2 27298 chr17:106864:- ONLY_REF_SPLICE YES 1136 63 0.23 4.03 GT 1.7819 AG 1.8892 0.9278 7162 0
FBXO25--AC240565.1 1 0 1.00 0.00 FBXO25^ENSG00000147364.17 4937 chr8:431444:+ AC240565.1^ENSG00000280136.2 27298 chr17:106864:- ONLY_REF_SPLICE YES 1054 63 0.00 0.03 GT 1.3383 AG 1.8892 0.0036 5533 0
C1QTNF3--AMACR 242 17 242.00 15.88 C1QTNF3^ENSG00000082196.21 7818 chr5:34020587:- AMACR^ENSG00000242110.8 14880 chr5:34005899:- INCL_NON_REF_SPLICE YES 418 5177 0.62 0.05 GT 1.9086 AG 1.9086 0.931 1362 0
C1QTNF3--AMACR 16 18 16.00 2.12 C1QTNF3^ENSG00000082196.21 8100 chr5:34020305:- AMACR^ENSG00000242110.8 14880 chr5:34005899:- INCL_NON_REF_SPLICE YES 1 5177 17.50 0.01 GT 1.8892 AG 1.9086 0.0655 1300 0
KLRC4--KLRK1 166 4 166.00 3.59 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 8583 chr12:10388875:- INCL_NON_REF_SPLICE YES 137 129 1.24 1.32 GT 1.3996 AG 1.9219 0.6123 1207 0
KLRC4--KLRK1 18 5 18.00 1.41 KLRC4^ENSG00000183542.5 3122 chr12:10407636:- KLRK1^ENSG00000213809.9 6360 chr12:10391891:- INCL_NON_REF_SPLICE YES 137 0 0.17 24.00 GT 1.3996 AG 1.6895 0.0701 3430 0
AL353637.2--PRUNE2 159 0 159.00 0.00 AL353637.2^ENSG00000286332.1 1086 chr9:76919700:- PRUNE2^ENSG00000106772.18 10573 chr9:76854208:- ONLY_REF_SPLICE YES 0 1143 160.00 0.14 GT 1.4566 AG 1.7465 0.574 4892 0
AL353637.2--PRUNE2 15 2 15.00 2.00 AL353637.2^ENSG00000286332.1 2383 chr9:76918370:- PRUNE2^ENSG00000106772.18 10573 chr9:76854208:- INCL_NON_REF_SPLICE YES 0 1143 18.00 0.02 GT 1.9329 AG 1.7465 0.0614 4777 0
TVP23C--CDRT4 157 2 157.00 1.95 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 187 32 0.85 4.85 GT 1.9329 AG 1.9899 0.5738 1215 0
TVP23C--CDRT4 63 0 63.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 763 32 0.08 1.94 GT 1.8323 AG 1.9899 0.2274 2126 0
TVP23C--CDRT4 31 0 31.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 187 121 0.17 0.26 GT 1.9329 AG 1.6402 0.1119 137 0
TVP23C--CDRT4 31 0 31.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 336 32 0.09 0.97 GT 1.9086 AG 1.9899 0.1119 1774 0
TVP23C--CDRT4 14 0 14.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 763 121 0.02 0.12 GT 1.8323 AG 1.6402 0.0505 1363 0
TVP23C--CDRT4 11 0 11.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 30 32 0.39 0.36 GT 1.8892 AG 1.9899 0.0397 1949 0
TVP23C--CDRT4 4 0 4.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 336 121 0.01 0.04 GT 1.9086 AG 1.6402 0.0144 697 0
TVP23C--CDRT4 3 3 3.00 1.05 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- INCL_NON_REF_SPLICE YES 187 0 0.04 7.00 GT 1.9329 AG 1.8892 0.0146 1153 0
TVP23C--CDRT4 2 0 2.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 30 121 0.10 0.02 GT 1.8892 AG 1.6402 0.0072 873 0
DDX42--AC005670.3 143 3 143.00 3.00 DDX42^ENSG00000198231.13 9393 chr17:63805175:+ AC005670.3^ENSG00000262879.6 55174 chr17:46984069:- ONLY_REF_SPLICE YES 540 0 0.27 147.00 GT 1.9899 AG 1.8892 0.5271 4360 0
TLK2--FAM157A 109 0 109.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ FAM157A^ENSG00000236438.7 45187 chr3:198180755:+ ONLY_REF_SPLICE YES 680 81 0.16 1.34 GT 1.8892 AG 1.8892 0.3935 2733 0
AC138409.2--NAIP 108 0 108.00 0.00 AC138409.2^ENSG00000215158.9 11022 chr5:34175822:- NAIP^ENSG00000249437.8 25774 chr5:71003857:- ONLY_REF_SPLICE YES 381 414 0.29 0.26 GT 1.9329 AG 1.8295 0.3899 1426 0
AC138409.2--NAIP 33 1 33.00 1.00 AC138409.2^ENSG00000215158.9 11399 chr5:34175445:- NAIP^ENSG00000249437.8 25774 chr5:71003857:- ONLY_REF_SPLICE YES 78 414 0.44 0.08 GT 1.9086 AG 1.8295 0.1227 1066 0
AC138409.2--NAIP 9 0 9.00 0.00 AC138409.2^ENSG00000215158.9 11022 chr5:34175822:- NAIP^ENSG00000249437.8 32625 chr5:70985886:- ONLY_REF_SPLICE YES 381 1191 0.03 0.01 GT 1.9329 AG 1.8323 0.0325 1476 0
AC138409.2--NAIP 7 0 7.00 0.00 AC138409.2^ENSG00000215158.9 11399 chr5:34175445:- NAIP^ENSG00000249437.8 30637 chr5:70987874:- ONLY_REF_SPLICE YES 78 915 0.10 0.01 GT 1.9086 AG 1.6895 0.0253 1599 0
AC138409.2--NAIP 5 0 5.00 0.00 AC138409.2^ENSG00000215158.9 11022 chr5:34175822:- NAIP^ENSG00000249437.8 30637 chr5:70987874:- ONLY_REF_SPLICE YES 381 915 0.02 0.01 GT 1.9329 AG 1.6895 0.0181 1976 0
AC138409.2--NAIP 4 0 4.00 0.00 AC138409.2^ENSG00000215158.9 11022 chr5:34175822:- NAIP^ENSG00000249437.8 31709 chr5:70986802:- ONLY_REF_SPLICE YES 381 811 0.01 0.01 GT 1.9329 AG 1.6729 0.0144 1434 0
AC138409.2--NAIP 1 0 1.00 0.00 AC138409.2^ENSG00000215158.9 11399 chr5:34175445:- NAIP^ENSG00000249437.8 32625 chr5:70985886:- ONLY_REF_SPLICE YES 78 1191 0.03 0.00 GT 1.9086 AG 1.8323 0.0036 1132 0
CRISPLD2--TRANK1 74 2 74.00 2.00 CRISPLD2^ENSG00000103196.12 17041 chr16:84873963:+ TRANK1^ENSG00000168016.15 34211 chr3:36899259:- ONLY_REF_SPLICE YES 303 283 0.25 0.27 GT 1.7465 AG 1.9899 0.2744 3364 0
STX16--NPEPL1 46 0 46.00 0.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1221 86 0.04 0.54 GT 1.7968 AG 1.8256 0.1661 1940 0
AGPAT5--MAGI3 42 1 42.00 0.89 AGPAT5^ENSG00000155189.12 1246 chr8:6708887:+ MAGI3^ENSG00000081026.19 23191 chr1:113549515:+ ONLY_REF_SPLICE YES 281 645 0.16 0.07 GT 1.9086 AG 1.7968 0.1548 2945 0
AGPAT5--MAGI3 5 1 5.00 0.11 AGPAT5^ENSG00000155189.12 2971 chr8:6724939:+ MAGI3^ENSG00000081026.19 23191 chr1:113549515:+ ONLY_REF_SPLICE YES 193 645 0.04 0.01 GT 1.7968 AG 1.7968 0.0185 2884 0
CEP112--CPQ 21 0 21.00 0.00 CEP112^ENSG00000154240.17 35101 chr17:65743068:- CPQ^ENSG00000104324.16 55847 chr8:97029403:+ ONLY_REF_SPLICE YES 38 247 0.56 0.09 GT 1.7465 AG 1.9329 0.0758 2548 0
MAN1A2--LINC00535 19 2 19.00 0.72 MAN1A2^ENSG00000198162.12 2037 chr1:117368485:+ LINC00535^ENSG00000246662.6 33408 chr8:93531305:- ONLY_REF_SPLICE YES 415 0 0.05 22.00 GT 1.8295 AG 1.5058 0.0712 1184 0
MAN1A2--LINC00535 18 2 18.00 0.68 MAN1A2^ENSG00000198162.12 2037 chr1:117368485:+ LINC00535^ENSG00000246662.6 38356 chr8:93346906:- ONLY_REF_SPLICE YES 415 1 0.05 10.50 GT 1.8295 AG 1.4295 0.0675 121 0
MAN1A2--LINC00535 10 2 10.00 0.38 MAN1A2^ENSG00000198162.12 2037 chr1:117368485:+ LINC00535^ENSG00000246662.6 37297 chr8:93362578:- ONLY_REF_SPLICE YES 415 0 0.03 13.00 GT 1.8295 AG 1.9086 0.0375 1099 0
MAN1A2--LINC00535 5 2 5.00 0.19 MAN1A2^ENSG00000198162.12 2083 chr1:117368531:+ LINC00535^ENSG00000246662.6 33408 chr8:93531305:- INCL_NON_REF_SPLICE YES 370 0 0.02 8.00 GT 1.9086 AG 1.5058 0.0188 1198 0
MAN1A2--LINC00535 2 1 2.00 0.04 MAN1A2^ENSG00000198162.12 2037 chr1:117368485:+ LINC00535^ENSG00000246662.6 39796 chr8:93340257:- ONLY_REF_SPLICE YES 415 0 0.01 4.00 GT 1.8295 AG 1.3383 0.0073 1136 0
MAN1A2--LINC00535 1 0 1.00 0.00 MAN1A2^ENSG00000198162.12 2037 chr1:117368485:+ LINC00535^ENSG00000246662.6 41988 chr8:93292686:- ONLY_REF_SPLICE YES 415 0 0.00 2.00 GT 1.8295 AG 1.5656 0.0036 2399 0
RNF43--IFNGR2 18 0 18.00 0.00 RNF43^ENSG00000108375.13 3270 chr17:58415326:- IFNGR2^ENSG00000159128.15 27302 chr21:33478798:+ ONLY_REF_SPLICE YES 512 6 0.04 2.71 GC 1.7465 AG 1.6729 0.065 1322 0
AL512590.2--CCDC180 15 0 15.00 0.00 AL512590.2^ENSG00000254633.2 10469 chr9:97294991:+ CCDC180^ENSG00000197816.16 14676 chr9:97307736:+ ONLY_REF_SPLICE YES 0 0 16.00 16.00 GT 1.9219 AG 1.8892 0.0542 1040 0
TMEM50B--TSPOAP1-AS1 13 0 13.00 0.00 TMEM50B^ENSG00000142188.17 1137 chr21:33479838:- TSPOAP1-AS1^ENSG00000265148.6 31741 chr17:58394906:+ ONLY_REF_SPLICE YES 285 9 0.05 1.40 GT 1.7465 AG 1.8256 0.0469 62 1
TMEM50B--TSPOAP1-AS1 9 0 9.00 0.00 TMEM50B^ENSG00000142188.17 1137 chr21:33479838:- TSPOAP1-AS1^ENSG00000265148.6 32846 chr17:58415466:+ ONLY_REF_SPLICE YES 285 1231 0.03 0.01 GT 1.7465 AG 1.8295 0.0325 1101 0
CCDC30--CPNE7 8 0 8.00 0.00 CCDC30^ENSG00000186409.18 18641 chr1:42521256:+ CPNE7^ENSG00000178773.15 74678 chr16:89595367:+ ONLY_REF_SPLICE YES 82 2074 0.11 0.00 GT 1.8892 AG 1.8256 0.0289 2027 0
70 rows