#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	33228	125	33228.00	115.40	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22437	chr4:1731172:+	ONLY_REF_SPLICE	YES	3179	1805	10.49	18.47	GT	1.8892	AG	1.9086	112.9063	1780	0
FGFR3--TACC3	2603	129	2603.00	13.05	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22419	chr4:1731154:+	INCL_NON_REF_SPLICE	YES	3179	1464	0.86	1.87	GT	1.8892	GA	1.2729	8.8584	1763	0
FGFR3--TACC3	151	35	151.00	0.15	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22512	chr4:1731247:+	INCL_NON_REF_SPLICE	YES	3179	4564	0.06	0.04	GT	1.8892	AG	1.7056	0.5118	1855	0
FGFR3--TACC3	66	124	66.00	0.23	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22440	chr4:1731175:+	INCL_NON_REF_SPLICE	YES	3179	2086	0.06	0.09	GT	1.8892	AG	1.9899	0.2243	1783	0
FGFR3--TACC3	69	7	69.00	0.01	FGFR3^ENSG00000068078.20	9625	chr4:1806681:+	TACC3^ENSG00000013810.20	22463	chr4:1731198:+	INCL_NON_REF_SPLICE	YES	7124	3071	0.01	0.03	CT	1.7056	AC	1.8295	0.2336	1857	0
FGFR3--TACC3	25	124	25.00	0.09	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22439	chr4:1731174:+	INCL_NON_REF_SPLICE	YES	3179	2037	0.05	0.07	GT	1.8892	GA	1.9899	0.085	1782	0
FGFR3--TACC3	26	30	26.00	0.02	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22540	chr4:1731275:+	INCL_NON_REF_SPLICE	YES	3179	4831	0.02	0.01	GT	1.8892	AG	1.8323	0.0881	1883	0
FGFR3--TACC3	5	83	5.00	10.03	FGFR3^ENSG00000068078.20	9886	chr4:1806942:+	TACC3^ENSG00000013810.20	22451	chr4:1731186:+	INCL_NON_REF_SPLICE	YES	2568	2686	0.03	0.03	TG	1.9086	AA	1.7232	0.0509	1793	0
FGFR3--TACC3	18	23	18.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	23567	chr4:1735273:+	ONLY_REF_SPLICE	YES	3179	4878	0.01	0.01	GT	1.8892	AG	1.8892	0.061	2006	0
FGFR3--TACC3	3	30	3.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22542	chr4:1731277:+	INCL_NON_REF_SPLICE	YES	3179	4893	0.01	0.01	GT	1.8892	AG	1.9086	0.0102	1884	0
FGFR3--TACC3	3	25	3.00	0.00	FGFR3^ENSG00000068078.20	9823	chr4:1806879:+	TACC3^ENSG00000013810.20	22430	chr4:1731165:+	INCL_NON_REF_SPLICE	YES	4136	1620	0.01	0.02	CT	1.6729	TT	1.8256	0.0102	1782	0
FGFR3--TACC3	6	7	6.00	0.00	FGFR3^ENSG00000068078.20	9823	chr4:1806879:+	TACC3^ENSG00000013810.20	22505	chr4:1731240:+	INCL_NON_REF_SPLICE	YES	4136	4493	0.00	0.00	CT	1.6729	AC	1.8256	0.0203	1856	0
FGFR3--TACC3	7	0	7.00	0.00	FGFR3^ENSG00000068078.20	9861	chr4:1806917:+	TACC3^ENSG00000013810.20	24107	chr4:1735813:+	INCL_NON_REF_SPLICE	YES	4075	9934	0.00	0.00	CC	1.9329	GC	1.7819	0.0237	1466	0
FGFR3--TACC3	3	11	3.00	0.00	FGFR3^ENSG00000068078.20	9823	chr4:1806879:+	TACC3^ENSG00000013810.20	22475	chr4:1731210:+	INCL_NON_REF_SPLICE	YES	4136	3567	0.00	0.00	CT	1.6729	AC	1.9329	0.0102	1826	0
FGFR3--TACC3	3	11	3.00	0.00	FGFR3^ENSG00000068078.20	9826	chr4:1806882:+	TACC3^ENSG00000013810.20	22474	chr4:1731209:+	INCL_NON_REF_SPLICE	YES	4132	3524	0.00	0.00	CA	1.8295	CA	1.9329	0.0102	1825	0
FGFR3--TACC3	5	2	5.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	24031	chr4:1735737:+	ONLY_REF_SPLICE	YES	3179	5590	0.00	0.00	GT	1.8892	AG	1.8295	0.0169	1542	0
FGFR3--TACC3	3	9	3.00	0.00	FGFR3^ENSG00000068078.20	9629	chr4:1806685:+	TACC3^ENSG00000013810.20	22456	chr4:1731191:+	INCL_NON_REF_SPLICE	YES	5774	2820	0.00	0.00	GA	1.8892	TG	1.7232	0.0102	1850	0
FGFR3--TACC3	3	9	3.00	0.00	FGFR3^ENSG00000068078.20	9628	chr4:1806684:+	TACC3^ENSG00000013810.20	22453	chr4:1731188:+	INCL_NON_REF_SPLICE	YES	6096	2758	0.00	0.00	TG	1.8892	CT	1.7232	0.0102	1847	0
FGFR3--TACC3	3	8	3.00	0.00	FGFR3^ENSG00000068078.20	9831	chr4:1806887:+	TACC3^ENSG00000013810.20	22531	chr4:1731266:+	INCL_NON_REF_SPLICE	YES	4145	4566	0.00	0.00	AG	1.8295	GG	1.5628	0.0102	1880	0
FGFR3--TACC3	5	0	5.00	0.00	FGFR3^ENSG00000068078.20	9603	chr4:1806659:+	TACC3^ENSG00000013810.20	27862	chr4:1739974:+	INCL_NON_REF_SPLICE	YES	9729	7482	0.00	0.00	GC	1.7819	AG	1.7819	0.0169	630	0
FGFR3--TACC3	5	0	5.00	0.00	FGFR3^ENSG00000068078.20	9090	chr4:1806146:+	TACC3^ENSG00000013810.20	22463	chr4:1731198:+	INCL_NON_REF_SPLICE	YES	8385	3071	0.00	0.00	CT	1.8256	AC	1.8295	0.0169	2066	0
FGFR3--TACC3	5	0	5.00	0.00	FGFR3^ENSG00000068078.20	8803	chr4:1805859:+	TACC3^ENSG00000013810.20	27635	chr4:1739747:+	INCL_NON_REF_SPLICE	YES	7455	8422	0.00	0.00	GA	1.6729	GT	1.7465	0.0169	287	0
FGFR3--TACC3	5	0	5.00	0.00	FGFR3^ENSG00000068078.20	8398	chr4:1805454:+	TACC3^ENSG00000013810.20	22517	chr4:1731252:+	INCL_NON_REF_SPLICE	YES	8992	4634	0.00	0.00	GT	1.8295	GG	1.9086	0.0169	1737	0
FGFR3--TACC3	4	1	4.00	0.00	FGFR3^ENSG00000068078.20	9264	chr4:1806320:+	TACC3^ENSG00000013810.20	22437	chr4:1731172:+	INCL_NON_REF_SPLICE	YES	6549	1805	0.00	0.00	GT	1.7819	AG	1.9086	0.0135	1962	0
FGFR3--TACC3	4	0	4.00	0.00	FGFR3^ENSG00000068078.20	9865	chr4:1806921:+	TACC3^ENSG00000013810.20	25158	chr4:1737270:+	INCL_NON_REF_SPLICE	YES	3927	8168	0.00	0.00	GA	1.7819	AG	1.7465	0.0135	415	0
FGFR3--TACC3	4	0	4.00	0.00	FGFR3^ENSG00000068078.20	9262	chr4:1806318:+	TACC3^ENSG00000013810.20	25125	chr4:1737237:+	INCL_NON_REF_SPLICE	YES	6557	7877	0.00	0.00	GA	1.7819	TG	1.8892	0.0135	621	0
FGFR3--TACC3	3	1	3.00	0.00	FGFR3^ENSG00000068078.20	9262	chr4:1806318:+	TACC3^ENSG00000013810.20	22432	chr4:1731167:+	INCL_NON_REF_SPLICE	YES	6557	1646	0.00	0.00	GA	1.7819	CC	1.9329	0.0102	1958	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	8378	chr4:1805434:+	TACC3^ENSG00000013810.20	22515	chr4:1731250:+	INCL_NON_REF_SPLICE	YES	8737	4608	0.00	0.00	GG	1.9329	AG	1.7819	0.0102	1717	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9854	chr4:1806910:+	TACC3^ENSG00000013810.20	24089	chr4:1735795:+	INCL_NON_REF_SPLICE	YES	4152	8501	0.00	0.00	GT	1.8892	CA	1.9656	0.0102	1484	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9259	chr4:1806315:+	TACC3^ENSG00000013810.20	31148	chr4:1744577:+	INCL_NON_REF_SPLICE	YES	6691	7800	0.00	0.00	CC	1.8892	GG	1.8256	0.0102	322	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9045	chr4:1806101:+	TACC3^ENSG00000013810.20	24090	chr4:1735796:+	INCL_NON_REF_SPLICE	YES	7952	8934	0.00	0.00	GT	1.8256	AG	1.9899	0.0102	1497	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	8831	chr4:1805887:+	TACC3^ENSG00000013810.20	27582	chr4:1739694:+	INCL_NON_REF_SPLICE	YES	7005	8194	0.00	0.00	TG	1.9656	GC	1.8323	0.0102	243	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9827	chr4:1806883:+	TACC3^ENSG00000013810.20	24046	chr4:1735752:+	INCL_NON_REF_SPLICE	YES	4134	6007	0.00	0.00	AA	1.8295	GG	1.9329	0.0102	1527	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	8884	chr4:1805940:+	TACC3^ENSG00000013810.20	22419	chr4:1731154:+	INCL_NON_REF_SPLICE	YES	7022	1464	0.00	0.00	GT	1.9656	GA	1.2729	0.0102	2140	0
BCAR3--GLMN	123	2	123.00	2.00	BCAR3^ENSG00000137936.18	16763	chr1:93642304:-	GLMN^ENSG00000174842.17	35057	chr1:92298029:-	ONLY_REF_SPLICE	YES	672	57	0.19	2.17	GT	1.5656	AG	1.8323	0.4233	2377	0
BCAR3--GLMN	2	0	2.00	0.00	BCAR3^ENSG00000137936.18	16763	chr1:93642304:-	GLMN^ENSG00000174842.17	36683	chr1:92291537:-	ONLY_REF_SPLICE	YES	672	186	0.00	0.02	GT	1.5656	AG	1.8892	0.0068	3355	0
BCAR3--GLMN	1	0	1.00	0.00	BCAR3^ENSG00000137936.18	16763	chr1:93642304:-	GLMN^ENSG00000174842.17	50081	chr1:92247144:-	ONLY_REF_SPLICE	YES	672	176	0.00	0.01	GT	1.5656	AG	1.8892	0.0034	1507	0
BCAR3--GLMN	1	0	1.00	0.00	BCAR3^ENSG00000137936.18	16763	chr1:93642304:-	GLMN^ENSG00000174842.17	37803	chr1:92290306:-	ONLY_REF_SPLICE	YES	672	317	0.00	0.01	GT	1.5656	AG	1.8892	0.0034	3318	0
UBR5--BAALC-AS1	87	0	87.00	0.00	UBR5^ENSG00000104517.13	1586	chr8:102412174:-	BAALC-AS1^ENSG00000247081.8	59210	chr8:103285905:-	INCL_NON_REF_SPLICE	YES	735	0	0.12	88.00	GG	1.8323	TT	1.5329	0.2946	1405	0
UBR5--BAALC-AS1	40	0	40.00	0.00	UBR5^ENSG00000104517.13	1587	chr8:102412173:-	BAALC-AS1^ENSG00000247081.8	59213	chr8:103285902:-	ONLY_REF_SPLICE	YES	718	0	0.06	41.00	GT	1.9086	AG	1.8892	0.1354	1408	0
UBR5--BAALC-AS1	38	0	38.00	0.00	UBR5^ENSG00000104517.13	1587	chr8:102412173:-	BAALC-AS1^ENSG00000247081.8	59218	chr8:103285897:-	ONLY_REF_SPLICE	YES	718	0	0.05	39.00	GT	1.9086	AG	1.9329	0.1287	1413	0
UBR5--BAALC-AS1	7	0	7.00	0.00	UBR5^ENSG00000104517.13	1587	chr8:102412173:-	BAALC-AS1^ENSG00000247081.8	70604	chr8:103234372:-	ONLY_REF_SPLICE	YES	718	0	0.01	8.00	GT	1.9086	AG	1.8323	0.0237	1875	0
UBR5--BAALC-AS1	4	0	4.00	0.00	UBR5^ENSG00000104517.13	1587	chr8:102412173:-	BAALC-AS1^ENSG00000247081.8	66472	chr8:103246684:-	ONLY_REF_SPLICE	YES	718	0	0.01	5.00	GT	1.9086	AG	1.9086	0.0135	807	0
UBR5--BAALC-AS1	2	0	2.00	0.00	UBR5^ENSG00000104517.13	1587	chr8:102412173:-	BAALC-AS1^ENSG00000247081.8	75478	chr8:103166296:-	ONLY_REF_SPLICE	YES	718	0	0.00	3.00	GT	1.9086	AG	1.4716	0.0068	386	0
PCDHA10--PCDHAC1	38	0	19.00	0.00	PCDHA10^ENSG00000250120.8	3554	chr5:140858436:+	PCDHAC1^ENSG00000248383.5	21506	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	13	26	2.79	1.44	GT	1.9329	AG	1.3996	0.0643	1105	0
PCDHA10--PCDHAC1	9	0	4.50	0.00	PCDHA10^ENSG00000250120.8	2765	chr5:140857647:+	PCDHAC1^ENSG00000248383.5	21506	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	20	26	0.48	0.37	GT	1.9656	AG	1.3996	0.0152	1292	0
PCDHA10--PCDHAC2	38	0	19.00	0.00	PCDHA10^ENSG00000250120.8	3554	chr5:140858436:+	PCDHAC2^ENSG00000243232.6	20370	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	13	97	2.79	0.40	GT	1.9329	AG	1.3996	0.0643	1235	0
PCDHA10--PCDHAC2	9	0	4.50	0.00	PCDHA10^ENSG00000250120.8	2765	chr5:140857647:+	PCDHAC2^ENSG00000243232.6	20370	chr5:140978949:+	INCL_NON_REF_SPLICE	YES	20	97	0.48	0.10	GT	1.9656	AG	1.3996	0.0152	1404	0
DYRK1A--LINC02756	27	0	27.00	0.00	DYRK1A^ENSG00000157540.22	9241	chr21:37420384:+	LINC02756^ENSG00000255332.8	60188	chr11:91842692:+	ONLY_REF_SPLICE	YES	1385	0	0.02	28.00	GT	1.8892	AG	1.7465	0.0914	3203	0
DYRK1A--LINC02756	11	0	11.00	0.00	DYRK1A^ENSG00000157540.22	9241	chr21:37420384:+	LINC02756^ENSG00000255332.8	62471	chr11:91851220:+	ONLY_REF_SPLICE	YES	1385	0	0.01	12.00	GT	1.8892	AG	1.7819	0.0372	2110	0
DYRK1A--LINC02756	2	0	2.00	0.00	DYRK1A^ENSG00000157540.22	9241	chr21:37420384:+	LINC02756^ENSG00000255332.8	63652	chr11:91855969:+	ONLY_REF_SPLICE	YES	1385	0	0.00	3.00	GT	1.8892	AG	1.9219	0.0068	2349	0
DYRK1A--LINC02756	2	0	2.00	0.00	DYRK1A^ENSG00000157540.22	9241	chr21:37420384:+	LINC02756^ENSG00000255332.8	59086	chr11:91841585:+	ONLY_REF_SPLICE	YES	1385	0	0.00	3.00	GT	1.8892	AG	1.6895	0.0068	3204	0
DYRK1A--LINC02756	1	0	1.00	0.00	DYRK1A^ENSG00000157540.22	13600	chr21:37430400:+	LINC02756^ENSG00000255332.8	63652	chr11:91855969:+	ONLY_REF_SPLICE	YES	902	0	0.00	2.00	GT	1.9899	AG	1.9219	0.0034	2473	0
DYRK1A--LINC02756	1	0	1.00	0.00	DYRK1A^ENSG00000157540.22	3056	chr21:37367628:+	LINC02756^ENSG00000255332.8	63652	chr11:91855969:+	ONLY_REF_SPLICE	YES	923	0	0.00	2.00	GT	1.5546	AG	1.9219	0.0034	2526	0
DYRK1A--LINC02756	1	0	1.00	0.00	DYRK1A^ENSG00000157540.22	9241	chr21:37420384:+	LINC02756^ENSG00000255332.8	56807	chr11:91812115:+	ONLY_REF_SPLICE	YES	1385	0	0.00	2.00	GT	1.8892	AG	1.7465	0.0034	2171	0
MTAP--LINC01239	16	0	16.00	0.00	MTAP^ENSG00000099810.21	7463	chr9:21818202:+	LINC01239^ENSG00000234840.2	30793	chr9:22674443:+	ONLY_REF_SPLICE	YES	143	0	0.12	17.00	GT	1.9656	AG	1.9656	0.0542	3965	0
MTAP--DMRTA1	15	0	15.00	0.00	MTAP^ENSG00000099810.21	7463	chr9:21818202:+	DMRTA1^ENSG00000176399.4	31605	chr9:22451064:+	ONLY_REF_SPLICE	YES	143	52	0.11	0.30	GT	1.9656	AG	1.3753	0.0508	669	0
AC015911.9--SLFN12L	11	1	11.00	1.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	6142	chr17:35480195:-	ONLY_REF_SPLICE	YES	0	21	13.00	0.59	GT	1.9329	AG	1.8892	0.0406	533	0
AC015911.9--SLFN12L	5	0	5.00	0.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000286065.2	8152	chr17:35478185:-	ONLY_REF_SPLICE	YES	0	40	6.00	0.15	GT	1.9329	AG	1.9329	0.0169	1380	0
AC015911.9--SLFN12L	2	0	2.00	0.00	AC015911.9^ENSG00000286030.2	1691	chr17:35522279:-	SLFN12L^ENSG00000205045.11	9263	chr17:35475485:-	ONLY_REF_SPLICE	YES	0	24	3.00	0.12	GT	1.9329	AG	1.7968	0.0068	508	0