File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 2.6 KB
- Workflow Run
- dev_rna_exp09_10-3b7a596a
- Published
- Jun 04, 2026 6:51 PM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| FFPE_HD789_02_RNA_0014_B23MHV2LT4_1 | 0.969699 | 62.44 | 0.9414 | 0.005972 | 158.7 | 143.0 | Yes | 0.970633 | 0.404778 | 0.019 | 0.04 | 4.216 | 569667148.0 | 95.67 | 0.0 | 45.679577 | 26.4349 | 0.541 | 0.846 | 0.0 | 0.0 | 1.725 | 5.018 | 98.45284733333334 | 590717084.0 | 282580628.0 | 0.73083 | 0.048665 | 0.941342 | 700.654535 | 316.0 | 0.637288 | 0.028761 | 0.971239 | 4989373.0 | 168487428.0 | 17180459.0 | 332327275.0 | 549601287.0 | 0.402361 | 353035759.0 | 9999000000.0 | 0.544064 | 76077869569.0 | 590717084.0 | 88.90979317753455 | |||||||||
| FFPE_HD789_02_RNA_0015_B23MHV2LT4_1 | 0.971082 | 61.28 | 0.9195 | 0.005663 | 178.9 | 163.0 | Yes | 0.971938 | 0.397013 | 0.01 | 0.021 | 4.219 | 572742717.0 | 96.0 | 0.0 | 35.382601333333334 | 28.292499999999997 | 0.576 | 0.901 | 0.0 | 0.0 | 1.831 | 5.44 | 98.67601366666666 | 592056082.0 | 284178144.0 | 0.732935 | 0.04947 | 0.941173 | 761.477905 | 328.0 | 0.640561 | 0.026524 | 0.973476 | 4679240.0 | 171734831.0 | 17726676.0 | 337253616.0 | 547324551.0 | 0.394765 | 358333316.0 | 9999000000.0 | 0.549607 | 80064042507.0 | 592056082.0 | 89.78310071332145 | |||||||||
| NTC_0001_0001_B23MHV2LT4_1 | 0.884316 | N/A | 0.4497 | 0.441469 | 61.4 | 31.0 | Skipped | 0.938957 | 0.820693 | 0.0 | 0.0 | 0.0 | 2464.0 | 4.04 | 0.0 | 53.308917516033304 | 42.160599999999995 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 13.093398837377318 | 47120.0 | 952.0 | 0.0 | 0.173778 | 0.011128 | 0.000321 | 0.0 | 0.0 | 0.935951 | 0.064049 | 2002.0 | 137.0 | 4435.0 | 284.0 | 27385.0 | 0.458383 | 25521.0 | 9999000000.0 | 0.696602 | 2875807.0 | 47120.0 | 0.9027713635140617 | |||||||||
| NTC_0001_0001_B23MHV2LT4_2 | 0.6963 | N/A | 0.4923 | 0.945875 | 62.3 | 31.0 | Skipped | 0.930471 | 0.812585 | 0.0 | 0.0 | 0.0 | 3763.0 | 0.6 | 0.0 | 6.650619219373459 | 57.1411 | 0.052 | 0.058 | 0.0 | 0.0 | 0.52 | 1.169 | 93.69128339970793 | 488868.0 | 1457.0 | 0.0 | 0.010116 | 0.000494 | 0.000222 | 0.0 | 0.0 | 0.952595 | 0.047405 | 2331.0 | 116.0 | 4728.0 | 231.0 | 20758.0 | 0.043981 | 467367.0 | 9999000000.0 | 0.85615 | 48990182.0 | 488868.0 | 0.5105304235055248 |
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