File Info

Filename
659_Wm-T1-TRNA-1_B23MHV2LT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/star_alignment/659_Wm-T1-TRNA-1_B23MHV2LT4_1.Log.final.out
Size
1.9 KB
Published
Jun 04, 2026 1:20 PM
                                 Started job on |	Jun 04 20:17:14
                             Started mapping on |	Jun 04 20:18:50
                                    Finished on |	Jun 04 20:19:01
       Mapping speed, Million of reads per hour |	9.98

                          Number of input reads |	30487
                      Average input read length |	114
                                    UNIQUE READS:
                   Uniquely mapped reads number |	2442
                        Uniquely mapped reads % |	8.01%
                          Average mapped length |	141.50
                       Number of splices: Total |	120
            Number of splices: Annotated (sjdb) |	78
                       Number of splices: GT/AG |	120
                       Number of splices: GC/AG |	0
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	0
                      Mismatch rate per base, % |	0.99%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	4.33
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	18705
             % of reads mapped to multiple loci |	61.35%
        Number of reads mapped to too many loci |	354
             % of reads mapped to too many loci |	1.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	211
       % of reads unmapped: too many mismatches |	0.69%
            Number of reads unmapped: too short |	6479
                 % of reads unmapped: too short |	21.25%
                Number of reads unmapped: other |	119
                     % of reads unmapped: other |	0.39%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3479
                            % of chimeric reads |	11.41%