File Info

Filename
659_R1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/star_alignment/659_R1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out
Size
1.9 KB
Published
Jun 04, 2026 1:20 PM
                                 Started job on |	Jun 04 20:17:14
                             Started mapping on |	Jun 04 20:18:51
                                    Finished on |	Jun 04 20:19:07
       Mapping speed, Million of reads per hour |	15.73

                          Number of input reads |	69900
                      Average input read length |	92
                                    UNIQUE READS:
                   Uniquely mapped reads number |	5105
                        Uniquely mapped reads % |	7.30%
                          Average mapped length |	104.65
                       Number of splices: Total |	97
            Number of splices: Annotated (sjdb) |	40
                       Number of splices: GT/AG |	91
                       Number of splices: GC/AG |	6
                       Number of splices: AT/AC |	0
               Number of splices: Non-canonical |	0
                      Mismatch rate per base, % |	1.34%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.00
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	49070
             % of reads mapped to multiple loci |	70.20%
        Number of reads mapped to too many loci |	724
             % of reads mapped to too many loci |	1.04%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	429
       % of reads unmapped: too many mismatches |	0.61%
            Number of reads unmapped: too short |	11129
                 % of reads unmapped: too short |	15.92%
                Number of reads unmapped: other |	202
                     % of reads unmapped: other |	0.29%
                                  CHIMERIC READS:
                       Number of chimeric reads |	6228
                            % of chimeric reads |	8.91%