Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/620a769597fb536b86ae7070b3d65e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/620a769597fb536b86ae7070b3d65e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/90f3ff50f0d638254bee6d77dc978b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/90f3ff50f0d638254bee6d77dc978b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory