Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/31ab3d23a262a1b642a7fad4a22a34/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/31ab3d23a262a1b642a7fad4a22a34/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/7645e4803f906a8522d0f0123f26c7/659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/cf/a844d18c3db3aeda7471fb3d005c4f/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 6
  Pass (FILTER=PASS): 1 (16.7%)
  Fail (FILTER=FAIL): 5 (83.3%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  total_reads_below_min(4.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  high: 1 pass, 1 fail (total: 2)
  low: 0 pass, 2 fail (total: 2)
  medium: 0 pass, 2 fail (total: 2)
Arriba filter: 6 rows -> 1 PASS; wrote 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_Kh-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt