Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8dd8e828daa57dfe290dc95ae3f67e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/8397af1dc6a171873ddd3ab2a8fc09/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8dd8e828daa57dfe290dc95ae3f67e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory