Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8def2d293591c38dfc037737ec4e24/659_bR4-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/961b0a4a1525e6a2079c05d0e80110/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/961b0a4a1525e6a2079c05d0e80110/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/bbff57acb2bb689dae8c6ec27e98df/659_bR4-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
DOCK9--SERPINE2
starfusion
arriba
R3HDM1--RNF144A
starfusion
arriba
EML4--ALK
starfusion
arriba
GFPT1--ENOX2
starfusion
arriba
BCL2--ZNF521
starfusion
arriba
MRPS21--APH1A
starfusion
arriba
ZNF92--TDRD9
starfusion
arriba
MGAT4A--SNRNP200
starfusion
arriba
PLCL1--GULP1
starfusion
arriba
ZNF680--TMEM248
starfusion
arriba
RMND5A--KDM3A
starfusion
arriba
TLK2--AL669831.1
starfusion
TYW1--ZNF138
starfusion
arriba
RUNDC3B--ADAM22
starfusion
ATP11A--STK26
starfusion
KDM3A--TOP1
starfusion
FBXO25--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
ROCK2--ZNF385B
arriba
KDM5C--KMT2C
arriba
DTNB--SERPINE2
arriba
DTNB--USP21P1
arriba
PCDHGA1--PCDHGA8
arriba
PCDHGA1--PCDHGA9
arriba
PCDHGA1--PCDHGB6
arriba
PCDHGA1--PCDHGA10
arriba
PCDHGA1--PCDHGB7
arriba
PCDHGA1--PCDHGA11
arriba
PCDHGA1--PCDHGA12
arriba
PCDHGA1--PCDHGC3
arriba
PCDHGA1--PCDHGC4
arriba
PCDHGA1--PCDHGC5
arriba
AC015911.9--SLFN12L
arriba
TVP23C--CDRT4
arriba
SLFN11--SLFN12
arriba
IGFL1P2--HIF3A
arriba
PPP1R13B--ZNF138
arriba
MED14--PRRG1
arriba
MED14--FTH1P19
arriba
TDRD9--ZNF107
arriba
PARP8--LINC00276
arriba
ORC2--AC068196.1
arriba
LINC01654--IGSF21
arriba
IGSF21--IGSF21
arriba
MED14--FTH1P27
arriba
AC217774.2--CRHR1
arriba
CRHR1--CRHR1
arriba
ZNF521--ZNF521
arriba
ZNF521--RN7SL97P
arriba
KLRC4--KLRK1
arriba
ZNF92--RNU6-1254P
arriba
ZNF92--LINC02604
arriba
RNF144A--AC068725.1
arriba
AL512590.2--CCDC180
arriba
AC007785.3--IGFL2
arriba
LINC02210--CRHR1
arriba
AC217774.1--CRHR1
arriba
LRCH2--SPANXN1
arriba
LRCH2--TRMT1P1
arriba
PMS2P6--CCDC146
arriba
SLC25A12--AC092623.1
arriba
SLC25A12--MGAT5
arriba

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Processing DOCK9--SERPINE2:   0%|          | 0/62 [00:00<?, ?it/s]
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Processing R3HDM1--RNF144A:   2%|▏         | 1/62 [00:00<00:06,  9.24it/s]
Processing R3HDM1--RNF144A:   3%|▎         | 2/62 [00:00<00:06,  9.47it/s]
Processing EML4--ALK:   3%|▎         | 2/62 [00:00<00:06,  9.47it/s]      
Processing EML4--ALK:   5%|▍         | 3/62 [00:00<00:06,  9.55it/s]
Processing GFPT1--ENOX2:   5%|▍         | 3/62 [00:00<00:06,  9.55it/s]
Processing GFPT1--ENOX2:   6%|▋         | 4/62 [00:00<00:06,  9.59it/s]
Processing BCL2--ZNF521:   6%|▋         | 4/62 [00:00<00:06,  9.59it/s]
Processing BCL2--ZNF521:   8%|▊         | 5/62 [00:00<00:05,  9.61it/s]
Processing MRPS21--APH1A:   8%|▊         | 5/62 [00:00<00:05,  9.61it/s]
Processing MRPS21--APH1A:  10%|▉         | 6/62 [00:00<00:05,  9.62it/s]
Processing ZNF92--TDRD9:  10%|▉         | 6/62 [00:00<00:05,  9.62it/s] 
Processing ZNF92--TDRD9:  11%|█▏        | 7/62 [00:00<00:05,  9.63it/s]
Processing MGAT4A--SNRNP200:  11%|█▏        | 7/62 [00:00<00:05,  9.63it/s]
Processing MGAT4A--SNRNP200:  13%|█▎        | 8/62 [00:00<00:05,  9.63it/s]
Processing PLCL1--GULP1:  13%|█▎        | 8/62 [00:00<00:05,  9.63it/s]    
Processing PLCL1--GULP1:  15%|█▍        | 9/62 [00:00<00:05,  9.64it/s]
Processing ZNF680--TMEM248:  15%|█▍        | 9/62 [00:00<00:05,  9.64it/s]
Processing ZNF680--TMEM248:  16%|█▌        | 10/62 [00:01<00:05,  9.64it/s]
Processing RMND5A--KDM3A:  16%|█▌        | 10/62 [00:01<00:05,  9.64it/s]  
Processing RMND5A--KDM3A:  18%|█▊        | 11/62 [00:01<00:05,  9.64it/s]
Processing TLK2--AL669831.1:  18%|█▊        | 11/62 [00:01<00:05,  9.64it/s]
Processing TLK2--AL669831.1:  19%|█▉        | 12/62 [00:01<00:05,  9.65it/s]
Processing TYW1--ZNF138:  19%|█▉        | 12/62 [00:01<00:05,  9.65it/s]    
Processing TYW1--ZNF138:  21%|██        | 13/62 [00:01<00:05,  9.65it/s]
Processing RUNDC3B--ADAM22:  21%|██        | 13/62 [00:01<00:05,  9.65it/s]
Processing RUNDC3B--ADAM22:  23%|██▎       | 14/62 [00:01<00:04,  9.64it/s]
Processing ATP11A--STK26:  23%|██▎       | 14/62 [00:01<00:04,  9.64it/s]  
Processing ATP11A--STK26:  24%|██▍       | 15/62 [00:01<00:04,  9.64it/s]
Processing KDM3A--TOP1:  24%|██▍       | 15/62 [00:01<00:04,  9.64it/s]  
Processing KDM3A--TOP1:  26%|██▌       | 16/62 [00:01<00:04,  9.64it/s]
Processing FBXO25--AC240565.1:  26%|██▌       | 16/62 [00:01<00:04,  9.64it/s]
Processing FBXO25--AC240565.1:  27%|██▋       | 17/62 [00:01<00:04,  9.64it/s]
Processing STX16--NPEPL1:  27%|██▋       | 17/62 [00:01<00:04,  9.64it/s]     
Processing STX16--NPEPL1:  29%|██▉       | 18/62 [00:01<00:04,  9.64it/s]
Processing ROCK2--ZNF385B:  29%|██▉       | 18/62 [00:01<00:04,  9.64it/s]
Processing ROCK2--ZNF385B:  31%|███       | 19/62 [00:01<00:04,  9.64it/s]
Processing KDM5C--KMT2C:  31%|███       | 19/62 [00:01<00:04,  9.64it/s]  
Processing KDM5C--KMT2C:  32%|███▏      | 20/62 [00:02<00:04,  9.64it/s]
Processing DTNB--SERPINE2:  32%|███▏      | 20/62 [00:02<00:04,  9.64it/s]
Processing DTNB--SERPINE2:  34%|███▍      | 21/62 [00:02<00:04,  9.64it/s]
Processing DTNB--USP21P1:  34%|███▍      | 21/62 [00:02<00:04,  9.64it/s] 
Processing DTNB--USP21P1:  35%|███▌      | 22/62 [00:02<00:04,  9.65it/s]
Processing PCDHGA1--PCDHGA8:  35%|███▌      | 22/62 [00:02<00:04,  9.65it/s]
Processing PCDHGA1--PCDHGA8:  37%|███▋      | 23/62 [00:02<00:04,  9.65it/s]
Processing PCDHGA1--PCDHGA9:  37%|███▋      | 23/62 [00:02<00:04,  9.65it/s]
Processing PCDHGA1--PCDHGA9:  39%|███▊      | 24/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGB6:  39%|███▊      | 24/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGB6:  40%|████      | 25/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA10:  40%|████      | 25/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA10:  42%|████▏     | 26/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGB7:  42%|████▏     | 26/62 [00:02<00:03,  9.65it/s] 
Processing PCDHGA1--PCDHGB7:  44%|████▎     | 27/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA11:  44%|████▎     | 27/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA11:  45%|████▌     | 28/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA12:  45%|████▌     | 28/62 [00:02<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGA12:  47%|████▋     | 29/62 [00:03<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGC3:  47%|████▋     | 29/62 [00:03<00:03,  9.65it/s] 
Processing PCDHGA1--PCDHGC3:  48%|████▊     | 30/62 [00:03<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGC4:  48%|████▊     | 30/62 [00:03<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGC4:  50%|█████     | 31/62 [00:03<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGC5:  50%|█████     | 31/62 [00:03<00:03,  9.65it/s]
Processing PCDHGA1--PCDHGC5:  52%|█████▏    | 32/62 [00:03<00:03,  9.65it/s]
Processing AC015911.9--SLFN12L:  52%|█████▏    | 32/62 [00:03<00:03,  9.65it/s]
Processing AC015911.9--SLFN12L:  53%|█████▎    | 33/62 [00:03<00:03,  9.65it/s]
Processing TVP23C--CDRT4:  53%|█████▎    | 33/62 [00:03<00:03,  9.65it/s]      
Processing TVP23C--CDRT4:  55%|█████▍    | 34/62 [00:03<00:02,  9.65it/s]
Processing SLFN11--SLFN12:  55%|█████▍    | 34/62 [00:03<00:02,  9.65it/s]
Processing SLFN11--SLFN12:  56%|█████▋    | 35/62 [00:03<00:02,  9.65it/s]
Processing IGFL1P2--HIF3A:  56%|█████▋    | 35/62 [00:03<00:02,  9.65it/s]
Processing IGFL1P2--HIF3A:  58%|█████▊    | 36/62 [00:03<00:02,  9.65it/s]
Processing PPP1R13B--ZNF138:  58%|█████▊    | 36/62 [00:03<00:02,  9.65it/s]
Processing PPP1R13B--ZNF138:  60%|█████▉    | 37/62 [00:03<00:02,  9.65it/s]
Processing MED14--PRRG1:  60%|█████▉    | 37/62 [00:03<00:02,  9.65it/s]    
Processing MED14--PRRG1:  61%|██████▏   | 38/62 [00:03<00:02,  9.65it/s]
Processing MED14--FTH1P19:  61%|██████▏   | 38/62 [00:03<00:02,  9.65it/s]
Processing MED14--FTH1P19:  63%|██████▎   | 39/62 [00:04<00:02,  9.65it/s]
Processing TDRD9--ZNF107:  63%|██████▎   | 39/62 [00:04<00:02,  9.65it/s] 
Processing TDRD9--ZNF107:  65%|██████▍   | 40/62 [00:04<00:02,  9.65it/s]
Processing PARP8--LINC00276:  65%|██████▍   | 40/62 [00:04<00:02,  9.65it/s]
Processing PARP8--LINC00276:  66%|██████▌   | 41/62 [00:04<00:02,  9.65it/s]
Processing ORC2--AC068196.1:  66%|██████▌   | 41/62 [00:04<00:02,  9.65it/s]
Processing ORC2--AC068196.1:  68%|██████▊   | 42/62 [00:04<00:02,  9.65it/s]
Processing LINC01654--IGSF21:  68%|██████▊   | 42/62 [00:04<00:02,  9.65it/s]
Processing LINC01654--IGSF21:  69%|██████▉   | 43/62 [00:04<00:01,  9.65it/s]
Processing IGSF21--IGSF21:  69%|██████▉   | 43/62 [00:04<00:01,  9.65it/s]   
Processing IGSF21--IGSF21:  71%|███████   | 44/62 [00:04<00:01,  9.65it/s]
Processing MED14--FTH1P27:  71%|███████   | 44/62 [00:04<00:01,  9.65it/s]
Processing MED14--FTH1P27:  73%|███████▎  | 45/62 [00:04<00:01,  9.65it/s]
Processing AC217774.2--CRHR1:  73%|███████▎  | 45/62 [00:04<00:01,  9.65it/s]
Processing AC217774.2--CRHR1:  74%|███████▍  | 46/62 [00:04<00:01,  9.65it/s]
Processing CRHR1--CRHR1:  74%|███████▍  | 46/62 [00:04<00:01,  9.65it/s]     
Processing CRHR1--CRHR1:  76%|███████▌  | 47/62 [00:04<00:01,  9.65it/s]
Processing ZNF521--ZNF521:  76%|███████▌  | 47/62 [00:04<00:01,  9.65it/s]
Processing ZNF521--ZNF521:  77%|███████▋  | 48/62 [00:04<00:01,  9.64it/s]
Processing ZNF521--RN7SL97P:  77%|███████▋  | 48/62 [00:04<00:01,  9.64it/s]
Processing ZNF521--RN7SL97P:  79%|███████▉  | 49/62 [00:05<00:01,  9.65it/s]
Processing KLRC4--KLRK1:  79%|███████▉  | 49/62 [00:05<00:01,  9.65it/s]    
Processing KLRC4--KLRK1:  81%|████████  | 50/62 [00:05<00:01,  9.64it/s]
Processing ZNF92--RNU6-1254P:  81%|████████  | 50/62 [00:05<00:01,  9.64it/s]
Processing ZNF92--RNU6-1254P:  82%|████████▏ | 51/62 [00:05<00:01,  9.65it/s]
Processing ZNF92--LINC02604:  82%|████████▏ | 51/62 [00:05<00:01,  9.65it/s] 
Processing ZNF92--LINC02604:  84%|████████▍ | 52/62 [00:05<00:01,  9.65it/s]
Processing RNF144A--AC068725.1:  84%|████████▍ | 52/62 [00:05<00:01,  9.65it/s]
Processing RNF144A--AC068725.1:  85%|████████▌ | 53/62 [00:05<00:00,  9.65it/s]
Processing AL512590.2--CCDC180:  85%|████████▌ | 53/62 [00:05<00:00,  9.65it/s]
Processing AL512590.2--CCDC180:  87%|████████▋ | 54/62 [00:05<00:00,  9.65it/s]
Processing AC007785.3--IGFL2:  87%|████████▋ | 54/62 [00:05<00:00,  9.65it/s]  
Processing AC007785.3--IGFL2:  89%|████████▊ | 55/62 [00:05<00:00,  9.65it/s]
Processing LINC02210--CRHR1:  89%|████████▊ | 55/62 [00:05<00:00,  9.65it/s] 
Processing LINC02210--CRHR1:  90%|█████████ | 56/62 [00:05<00:00,  9.65it/s]
Processing AC217774.1--CRHR1:  90%|█████████ | 56/62 [00:05<00:00,  9.65it/s]
Processing AC217774.1--CRHR1:  92%|█████████▏| 57/62 [00:05<00:00,  9.65it/s]
Processing LRCH2--SPANXN1:  92%|█████████▏| 57/62 [00:05<00:00,  9.65it/s]   
Processing LRCH2--SPANXN1:  94%|█████████▎| 58/62 [00:06<00:00,  9.65it/s]
Processing LRCH2--TRMT1P1:  94%|█████████▎| 58/62 [00:06<00:00,  9.65it/s]
Processing LRCH2--TRMT1P1:  95%|█████████▌| 59/62 [00:06<00:00,  9.65it/s]
Processing PMS2P6--CCDC146:  95%|█████████▌| 59/62 [00:06<00:00,  9.65it/s]
Processing PMS2P6--CCDC146:  97%|█████████▋| 60/62 [00:06<00:00,  9.65it/s]
Processing SLC25A12--AC092623.1:  97%|█████████▋| 60/62 [00:06<00:00,  9.65it/s]
Processing SLC25A12--AC092623.1:  98%|█████████▊| 61/62 [00:06<00:00,  9.65it/s]
Processing SLC25A12--MGAT5:  98%|█████████▊| 61/62 [00:06<00:00,  9.65it/s]     
Processing SLC25A12--MGAT5: 100%|██████████| 62/62 [00:06<00:00,  9.65it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 62/62 [00:06<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory