Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/206a73a60823425de95ff522ddf8c3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/206a73a60823425de95ff522ddf8c3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/ede3b5bfad4a0d6517c7c51370e11b/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/1e7a073df68f2c1a6261e2fd036c73/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 292349702
[W::hts_idx_load3] The index file is older than the data file: 659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	292349702
Known Splicing Events:	288567806
Partial Novel Splicing Events:	2090874
Novel Splicing Events:	1578852
Filtered Splicing Events:	112170

Total splicing  Junctions:	692591
Known Splicing Junctions:	312597
Partial Novel Splicing Junctions:	219099
Novel Splicing Junctions:	160895

===================================================================
Create BED file ...
Create Interact file ...