Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 21:44:49.490 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Thu Jun 04 21:44:49 GMT 2026] MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu Jun 04 21:44:49 GMT 2026] Executing as ?@nf-165b33e881065e36c6b0563838ac96c9-e6f5c-2d29q on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-04 21:44:49 MarkDuplicates Start of doWork freeMemory: 105802672; totalMemory: 134217728; maxMemory: 127137742848 INFO 2026-06-04 21:44:49 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-04 21:44:49 MarkDuplicates Will retain up to 460643995 data points before spilling to disk. INFO 2026-06-04 21:44:54 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,048,031 INFO 2026-06-04 21:44:54 MarkDuplicates Tracking 3541 as yet unmatched pairs. 1239 records in RAM. INFO 2026-06-04 21:44:56 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,420,805 INFO 2026-06-04 21:44:56 MarkDuplicates Tracking 4915 as yet unmatched pairs. 223 records in RAM. INFO 2026-06-04 21:44:59 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:3,625,196 INFO 2026-06-04 21:44:59 MarkDuplicates Tracking 7223 as yet unmatched pairs. 478 records in RAM. INFO 2026-06-04 21:45:01 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,014,008 INFO 2026-06-04 21:45:01 MarkDuplicates Tracking 9737 as yet unmatched pairs. 787 records in RAM. INFO 2026-06-04 21:45:03 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:9,743,994 INFO 2026-06-04 21:45:03 MarkDuplicates Tracking 13116 as yet unmatched pairs. 2229 records in RAM. INFO 2026-06-04 21:45:05 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,923,061 INFO 2026-06-04 21:45:05 MarkDuplicates Tracking 13595 as yet unmatched pairs. 612 records in RAM. INFO 2026-06-04 21:45:06 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:15,716,710 INFO 2026-06-04 21:45:06 MarkDuplicates Tracking 15634 as yet unmatched pairs. 642 records in RAM. INFO 2026-06-04 21:45:08 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:17,022,655 INFO 2026-06-04 21:45:08 MarkDuplicates Tracking 17382 as yet unmatched pairs. 477 records in RAM. INFO 2026-06-04 21:45:10 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:20,483,633 INFO 2026-06-04 21:45:10 MarkDuplicates Tracking 19429 as yet unmatched pairs. 526 records in RAM. INFO 2026-06-04 21:45:12 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,831,494 INFO 2026-06-04 21:45:12 MarkDuplicates Tracking 22540 as yet unmatched pairs. 1683 records in RAM. INFO 2026-06-04 21:45:14 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,872,235 INFO 2026-06-04 21:45:14 MarkDuplicates Tracking 24277 as yet unmatched pairs. 1275 records in RAM. INFO 2026-06-04 21:45:16 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,017 INFO 2026-06-04 21:45:16 MarkDuplicates Tracking 27463 as yet unmatched pairs. 2463 records in RAM. INFO 2026-06-04 21:45:18 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:23,019,767 INFO 2026-06-04 21:45:18 MarkDuplicates Tracking 27449 as yet unmatched pairs. 584 records in RAM. INFO 2026-06-04 21:45:20 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:25,813,921 INFO 2026-06-04 21:45:20 MarkDuplicates Tracking 29743 as yet unmatched pairs. 1135 records in RAM. INFO 2026-06-04 21:45:21 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,666 INFO 2026-06-04 21:45:21 MarkDuplicates Tracking 35057 as yet unmatched pairs. 4570 records in RAM. INFO 2026-06-04 21:45:24 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:28,210,593 INFO 2026-06-04 21:45:24 MarkDuplicates Tracking 33512 as yet unmatched pairs. 977 records in RAM. INFO 2026-06-04 21:45:25 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:31,429,483 INFO 2026-06-04 21:45:25 MarkDuplicates Tracking 36906 as yet unmatched pairs. 2330 records in RAM. INFO 2026-06-04 21:45:27 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:32,229,197 INFO 2026-06-04 21:45:27 MarkDuplicates Tracking 37355 as yet unmatched pairs. 722 records in RAM. INFO 2026-06-04 21:45:29 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,698 INFO 2026-06-04 21:45:29 MarkDuplicates Tracking 40681 as yet unmatched pairs. 2136 records in RAM. INFO 2026-06-04 21:45:32 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:36,469,156 INFO 2026-06-04 21:45:32 MarkDuplicates Tracking 41090 as yet unmatched pairs. 488 records in RAM. INFO 2026-06-04 21:45:34 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:39,484,697 INFO 2026-06-04 21:45:34 MarkDuplicates Tracking 43280 as yet unmatched pairs. 691 records in RAM. INFO 2026-06-04 21:45:36 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:42,696,910 INFO 2026-06-04 21:45:36 MarkDuplicates Tracking 45556 as yet unmatched pairs. 1009 records in RAM. INFO 2026-06-04 21:45:38 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,240 INFO 2026-06-04 21:45:38 MarkDuplicates Tracking 49996 as yet unmatched pairs. 3370 records in RAM. INFO 2026-06-04 21:45:40 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:45,011,104 INFO 2026-06-04 21:45:40 MarkDuplicates Tracking 49046 as yet unmatched pairs. 192 records in RAM. INFO 2026-06-04 21:45:41 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:51,798,347 INFO 2026-06-04 21:45:41 MarkDuplicates Tracking 51187 as yet unmatched pairs. 410 records in RAM. INFO 2026-06-04 21:45:43 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:58,782,092 INFO 2026-06-04 21:45:43 MarkDuplicates Tracking 54538 as yet unmatched pairs. 1705 records in RAM. INFO 2026-06-04 21:45:46 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:68,194,119 INFO 2026-06-04 21:45:46 MarkDuplicates Tracking 55694 as yet unmatched pairs. 965 records in RAM. INFO 2026-06-04 21:45:48 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:86,447,506 INFO 2026-06-04 21:45:48 MarkDuplicates Tracking 57240 as yet unmatched pairs. 642 records in RAM. INFO 2026-06-04 21:45:50 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:94,489,802 INFO 2026-06-04 21:45:50 MarkDuplicates Tracking 58762 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-04 21:45:51 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:109,235,376 INFO 2026-06-04 21:45:51 MarkDuplicates Tracking 60493 as yet unmatched pairs. 259 records in RAM. INFO 2026-06-04 21:45:53 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:113,838,040 INFO 2026-06-04 21:45:53 MarkDuplicates Tracking 62273 as yet unmatched pairs. 72 records in RAM. INFO 2026-06-04 21:45:55 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,341 INFO 2026-06-04 21:45:55 MarkDuplicates Tracking 65377 as yet unmatched pairs. 1223 records in RAM. INFO 2026-06-04 21:45:56 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:143,968,981 INFO 2026-06-04 21:45:56 MarkDuplicates Tracking 65704 as yet unmatched pairs. 92 records in RAM. INFO 2026-06-04 21:45:57 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:148,123,889 INFO 2026-06-04 21:45:57 MarkDuplicates Tracking 66930 as yet unmatched pairs. 203 records in RAM. INFO 2026-06-04 21:45:59 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,528 INFO 2026-06-04 21:45:59 MarkDuplicates Tracking 70761 as yet unmatched pairs. 3053 records in RAM. INFO 2026-06-04 21:46:01 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:150,578,898 INFO 2026-06-04 21:46:01 MarkDuplicates Tracking 72239 as yet unmatched pairs. 2981 records in RAM. INFO 2026-06-04 21:46:03 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:151,986,099 INFO 2026-06-04 21:46:03 MarkDuplicates Tracking 75107 as yet unmatched pairs. 3892 records in RAM. INFO 2026-06-04 21:46:06 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:153,816,479 INFO 2026-06-04 21:46:06 MarkDuplicates Tracking 73127 as yet unmatched pairs. 182 records in RAM. INFO 2026-06-04 21:46:07 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,134 INFO 2026-06-04 21:46:07 MarkDuplicates Tracking 85134 as yet unmatched pairs. 10360 records in RAM. INFO 2026-06-04 21:46:09 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,977,986 INFO 2026-06-04 21:46:09 MarkDuplicates Tracking 77954 as yet unmatched pairs. 1302 records in RAM. INFO 2026-06-04 21:46:11 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:155,766,363 INFO 2026-06-04 21:46:11 MarkDuplicates Tracking 78741 as yet unmatched pairs. 229 records in RAM. INFO 2026-06-04 21:46:12 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,327 INFO 2026-06-04 21:46:12 MarkDuplicates Tracking 85459 as yet unmatched pairs. 4712 records in RAM. INFO 2026-06-04 21:46:15 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:156,723,378 INFO 2026-06-04 21:46:15 MarkDuplicates Tracking 83288 as yet unmatched pairs. 460 records in RAM. INFO 2026-06-04 21:46:17 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:160,291,832 INFO 2026-06-04 21:46:17 MarkDuplicates Tracking 85687 as yet unmatched pairs. 1051 records in RAM. INFO 2026-06-04 21:46:19 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:161,506,582 INFO 2026-06-04 21:46:19 MarkDuplicates Tracking 94437 as yet unmatched pairs. 7768 records in RAM. INFO 2026-06-04 21:46:21 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:165,896,235 INFO 2026-06-04 21:46:21 MarkDuplicates Tracking 88807 as yet unmatched pairs. 383 records in RAM. INFO 2026-06-04 21:46:22 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:171,583,992 INFO 2026-06-04 21:46:22 MarkDuplicates Tracking 90587 as yet unmatched pairs. 269 records in RAM. INFO 2026-06-04 21:46:25 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:180,836,554 INFO 2026-06-04 21:46:25 MarkDuplicates Tracking 92376 as yet unmatched pairs. 210 records in RAM. INFO 2026-06-04 21:46:27 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:183,215,465 INFO 2026-06-04 21:46:27 MarkDuplicates Tracking 97184 as yet unmatched pairs. 3010 records in RAM. INFO 2026-06-04 21:46:29 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:183,240,066 INFO 2026-06-04 21:46:29 MarkDuplicates Tracking 101413 as yet unmatched pairs. 5129 records in RAM. INFO 2026-06-04 21:46:30 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:186,325,822 INFO 2026-06-04 21:46:30 MarkDuplicates Tracking 98346 as yet unmatched pairs. 272 records in RAM. INFO 2026-06-04 21:46:32 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:200,409,043 INFO 2026-06-04 21:46:32 MarkDuplicates Tracking 100069 as yet unmatched pairs. 316 records in RAM. INFO 2026-06-04 21:46:34 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:202,158,196 INFO 2026-06-04 21:46:34 MarkDuplicates Tracking 101594 as yet unmatched pairs. 50 records in RAM. INFO 2026-06-04 21:46:37 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 3s. Last read position: chr1:205,524,309 INFO 2026-06-04 21:46:37 MarkDuplicates Tracking 103550 as yet unmatched pairs. 169 records in RAM. INFO 2026-06-04 21:46:39 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:208,038,394 INFO 2026-06-04 21:46:39 MarkDuplicates Tracking 105090 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-04 21:46:41 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:209,628,078 INFO 2026-06-04 21:46:41 MarkDuplicates Tracking 116843 as yet unmatched pairs. 9532 records in RAM. INFO 2026-06-04 21:46:42 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:214,369,564 INFO 2026-06-04 21:46:42 MarkDuplicates Tracking 109304 as yet unmatched pairs. 55 records in RAM. INFO 2026-06-04 21:46:44 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:224,356,942 INFO 2026-06-04 21:46:44 MarkDuplicates Tracking 112452 as yet unmatched pairs. 1357 records in RAM. INFO 2026-06-04 21:46:45 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:228,148,404 INFO 2026-06-04 21:46:45 MarkDuplicates Tracking 114304 as yet unmatched pairs. 1251 records in RAM. INFO 2026-06-04 21:46:48 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:235,168,528 INFO 2026-06-04 21:46:48 MarkDuplicates Tracking 115405 as yet unmatched pairs. 76 records in RAM. INFO 2026-06-04 21:46:50 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,706 INFO 2026-06-04 21:46:50 MarkDuplicates Tracking 117723 as yet unmatched pairs. 519 records in RAM. INFO 2026-06-04 21:46:53 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 3s. Last read position: chr2:8,778,641 INFO 2026-06-04 21:46:53 MarkDuplicates Tracking 119689 as yet unmatched pairs. 118815 records in RAM. INFO 2026-06-04 21:46:56 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:15,623,546 INFO 2026-06-04 21:46:56 MarkDuplicates Tracking 121680 as yet unmatched pairs. 120782 records in RAM. INFO 2026-06-04 21:46:58 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,221 INFO 2026-06-04 21:46:58 MarkDuplicates Tracking 128425 as yet unmatched pairs. 127518 records in RAM. INFO 2026-06-04 21:47:00 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:26,191,499 INFO 2026-06-04 21:47:00 MarkDuplicates Tracking 125632 as yet unmatched pairs. 124714 records in RAM. INFO 2026-06-04 21:47:01 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:27,653,500 INFO 2026-06-04 21:47:01 MarkDuplicates Tracking 127704 as yet unmatched pairs. 126770 records in RAM. INFO 2026-06-04 21:47:03 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,431,077 INFO 2026-06-04 21:47:03 MarkDuplicates Tracking 129431 as yet unmatched pairs. 128479 records in RAM. INFO 2026-06-04 21:47:06 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-06-04 21:47:06 MarkDuplicates Tracking 429506 as yet unmatched pairs. 118683 records in RAM. INFO 2026-06-04 21:47:08 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:47:08 MarkDuplicates Tracking 997130 as yet unmatched pairs. 100020 records in RAM. INFO 2026-06-04 21:47:10 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:47:10 MarkDuplicates Tracking 1010452 as yet unmatched pairs. 99580 records in RAM. INFO 2026-06-04 21:47:12 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:37,119,960 INFO 2026-06-04 21:47:12 MarkDuplicates Tracking 1055184 as yet unmatched pairs. 96894 records in RAM. INFO 2026-06-04 21:47:14 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,512 INFO 2026-06-04 21:47:14 MarkDuplicates Tracking 1053735 as yet unmatched pairs. 95432 records in RAM. INFO 2026-06-04 21:47:16 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:47,801,067 INFO 2026-06-04 21:47:16 MarkDuplicates Tracking 1050895 as yet unmatched pairs. 92564 records in RAM. INFO 2026-06-04 21:47:17 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,840 INFO 2026-06-04 21:47:17 MarkDuplicates Tracking 1051612 as yet unmatched pairs. 93264 records in RAM. INFO 2026-06-04 21:47:19 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:61,257,314 INFO 2026-06-04 21:47:19 MarkDuplicates Tracking 1047390 as yet unmatched pairs. 89033 records in RAM. INFO 2026-06-04 21:47:21 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:68,394,111 INFO 2026-06-04 21:47:21 MarkDuplicates Tracking 1045320 as yet unmatched pairs. 86940 records in RAM. INFO 2026-06-04 21:47:24 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 3s. Last read position: chr2:73,228,520 INFO 2026-06-04 21:47:24 MarkDuplicates Tracking 1043116 as yet unmatched pairs. 84715 records in RAM. INFO 2026-06-04 21:47:25 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:74,527,765 INFO 2026-06-04 21:47:25 MarkDuplicates Tracking 1042458 as yet unmatched pairs. 84036 records in RAM. INFO 2026-06-04 21:47:27 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:86,457,002 INFO 2026-06-04 21:47:27 MarkDuplicates Tracking 1039561 as yet unmatched pairs. 81115 records in RAM. INFO 2026-06-04 21:47:29 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:96,861,438 INFO 2026-06-04 21:47:29 MarkDuplicates Tracking 1037656 as yet unmatched pairs. 79192 records in RAM. INFO 2026-06-04 21:47:30 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:102,028,290 INFO 2026-06-04 21:47:30 MarkDuplicates Tracking 1035667 as yet unmatched pairs. 77188 records in RAM. INFO 2026-06-04 21:47:32 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,024 INFO 2026-06-04 21:47:32 MarkDuplicates Tracking 1034984 as yet unmatched pairs. 76499 records in RAM. INFO 2026-06-04 21:47:33 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:111,863,675 INFO 2026-06-04 21:47:33 MarkDuplicates Tracking 1033045 as yet unmatched pairs. 74552 records in RAM. INFO 2026-06-04 21:47:35 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:113,955,652 INFO 2026-06-04 21:47:35 MarkDuplicates Tracking 1032203 as yet unmatched pairs. 73689 records in RAM. INFO 2026-06-04 21:47:36 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,285 INFO 2026-06-04 21:47:36 MarkDuplicates Tracking 1030190 as yet unmatched pairs. 71652 records in RAM. INFO 2026-06-04 21:47:38 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:148,468,319 INFO 2026-06-04 21:47:38 MarkDuplicates Tracking 1027806 as yet unmatched pairs. 69248 records in RAM. INFO 2026-06-04 21:47:40 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:160,137,446 INFO 2026-06-04 21:47:40 MarkDuplicates Tracking 1027899 as yet unmatched pairs. 69314 records in RAM. INFO 2026-06-04 21:47:42 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:171,692,777 INFO 2026-06-04 21:47:42 MarkDuplicates Tracking 1024453 as yet unmatched pairs. 65844 records in RAM. INFO 2026-06-04 21:47:44 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:173,955,999 INFO 2026-06-04 21:47:44 MarkDuplicates Tracking 1023055 as yet unmatched pairs. 64438 records in RAM. INFO 2026-06-04 21:47:45 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:178,624,588 INFO 2026-06-04 21:47:45 MarkDuplicates Tracking 1020681 as yet unmatched pairs. 62048 records in RAM. INFO 2026-06-04 21:47:48 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 3s. Last read position: chr2:186,665,190 INFO 2026-06-04 21:47:48 MarkDuplicates Tracking 1020251 as yet unmatched pairs. 61605 records in RAM. INFO 2026-06-04 21:47:50 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,076 INFO 2026-06-04 21:47:50 MarkDuplicates Tracking 1025162 as yet unmatched pairs. 66503 records in RAM. INFO 2026-06-04 21:47:52 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,937 INFO 2026-06-04 21:47:52 MarkDuplicates Tracking 1019403 as yet unmatched pairs. 60736 records in RAM. INFO 2026-06-04 21:47:54 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:189,062,877 INFO 2026-06-04 21:47:54 MarkDuplicates Tracking 1013762 as yet unmatched pairs. 55080 records in RAM. INFO 2026-06-04 21:47:56 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:197,396,220 INFO 2026-06-04 21:47:56 MarkDuplicates Tracking 1011123 as yet unmatched pairs. 52431 records in RAM. INFO 2026-06-04 21:47:57 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:202,556,251 INFO 2026-06-04 21:47:57 MarkDuplicates Tracking 1008633 as yet unmatched pairs. 49927 records in RAM. INFO 2026-06-04 21:47:59 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,424 INFO 2026-06-04 21:47:59 MarkDuplicates Tracking 1030807 as yet unmatched pairs. 72072 records in RAM. INFO 2026-06-04 21:48:01 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,061 INFO 2026-06-04 21:48:01 MarkDuplicates Tracking 1048847 as yet unmatched pairs. 90106 records in RAM. INFO 2026-06-04 21:48:04 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,341 INFO 2026-06-04 21:48:04 MarkDuplicates Tracking 1064460 as yet unmatched pairs. 105711 records in RAM. INFO 2026-06-04 21:48:05 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,124 INFO 2026-06-04 21:48:05 MarkDuplicates Tracking 1066505 as yet unmatched pairs. 107752 records in RAM. INFO 2026-06-04 21:48:07 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,366 INFO 2026-06-04 21:48:07 MarkDuplicates Tracking 1040678 as yet unmatched pairs. 81923 records in RAM. INFO 2026-06-04 21:48:09 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,384 INFO 2026-06-04 21:48:09 MarkDuplicates Tracking 1035898 as yet unmatched pairs. 77143 records in RAM. INFO 2026-06-04 21:48:11 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,674 INFO 2026-06-04 21:48:11 MarkDuplicates Tracking 1022263 as yet unmatched pairs. 63503 records in RAM. INFO 2026-06-04 21:48:12 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,828 INFO 2026-06-04 21:48:12 MarkDuplicates Tracking 1049052 as yet unmatched pairs. 90290 records in RAM. INFO 2026-06-04 21:48:14 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,421 INFO 2026-06-04 21:48:14 MarkDuplicates Tracking 1011666 as yet unmatched pairs. 52899 records in RAM. INFO 2026-06-04 21:48:16 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,792 INFO 2026-06-04 21:48:16 MarkDuplicates Tracking 1017869 as yet unmatched pairs. 59100 records in RAM. INFO 2026-06-04 21:48:18 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,745 INFO 2026-06-04 21:48:18 MarkDuplicates Tracking 1018497 as yet unmatched pairs. 59726 records in RAM. INFO 2026-06-04 21:48:20 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,173 INFO 2026-06-04 21:48:20 MarkDuplicates Tracking 1062668 as yet unmatched pairs. 103892 records in RAM. INFO 2026-06-04 21:48:22 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,467 INFO 2026-06-04 21:48:22 MarkDuplicates Tracking 1028142 as yet unmatched pairs. 69357 records in RAM. INFO 2026-06-04 21:48:23 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,158 INFO 2026-06-04 21:48:23 MarkDuplicates Tracking 1033088 as yet unmatched pairs. 74291 records in RAM. INFO 2026-06-04 21:48:25 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,410 INFO 2026-06-04 21:48:25 MarkDuplicates Tracking 1020367 as yet unmatched pairs. 61570 records in RAM. INFO 2026-06-04 21:48:27 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,078 INFO 2026-06-04 21:48:27 MarkDuplicates Tracking 1014898 as yet unmatched pairs. 56100 records in RAM. INFO 2026-06-04 21:48:29 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,772 INFO 2026-06-04 21:48:29 MarkDuplicates Tracking 1001382 as yet unmatched pairs. 42584 records in RAM. INFO 2026-06-04 21:48:30 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,267 INFO 2026-06-04 21:48:30 MarkDuplicates Tracking 1014405 as yet unmatched pairs. 55607 records in RAM. INFO 2026-06-04 21:48:32 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,734 INFO 2026-06-04 21:48:32 MarkDuplicates Tracking 1004447 as yet unmatched pairs. 45644 records in RAM. INFO 2026-06-04 21:48:33 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,778 INFO 2026-06-04 21:48:33 MarkDuplicates Tracking 1007182 as yet unmatched pairs. 48376 records in RAM. INFO 2026-06-04 21:48:35 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:218,164,354 INFO 2026-06-04 21:48:35 MarkDuplicates Tracking 971743 as yet unmatched pairs. 12923 records in RAM. INFO 2026-06-04 21:48:37 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:219,250,883 INFO 2026-06-04 21:48:37 MarkDuplicates Tracking 971677 as yet unmatched pairs. 12847 records in RAM. INFO 2026-06-04 21:48:40 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:224,001,901 INFO 2026-06-04 21:48:40 MarkDuplicates Tracking 968226 as yet unmatched pairs. 9371 records in RAM. INFO 2026-06-04 21:48:41 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:231,460,765 INFO 2026-06-04 21:48:41 MarkDuplicates Tracking 966345 as yet unmatched pairs. 7472 records in RAM. INFO 2026-06-04 21:48:43 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,573 INFO 2026-06-04 21:48:43 MarkDuplicates Tracking 966554 as yet unmatched pairs. 7668 records in RAM. INFO 2026-06-04 21:48:44 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr2:237,749,252 INFO 2026-06-04 21:48:44 MarkDuplicates Tracking 962674 as yet unmatched pairs. 3773 records in RAM. INFO 2026-06-04 21:48:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:241,242,638 INFO 2026-06-04 21:48:46 MarkDuplicates Tracking 961545 as yet unmatched pairs. 2624 records in RAM. INFO 2026-06-04 21:48:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:9,791,339 INFO 2026-06-04 21:48:48 MarkDuplicates Tracking 958138 as yet unmatched pairs. 54457 records in RAM. INFO 2026-06-04 21:48:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:15,436,457 INFO 2026-06-04 21:48:50 MarkDuplicates Tracking 956173 as yet unmatched pairs. 52490 records in RAM. INFO 2026-06-04 21:48:51 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:37,275,563 INFO 2026-06-04 21:48:51 MarkDuplicates Tracking 954451 as yet unmatched pairs. 50748 records in RAM. INFO 2026-06-04 21:48:53 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:43,055,488 INFO 2026-06-04 21:48:53 MarkDuplicates Tracking 952303 as yet unmatched pairs. 48596 records in RAM. INFO 2026-06-04 21:48:55 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:47,916,798 INFO 2026-06-04 21:48:55 MarkDuplicates Tracking 951350 as yet unmatched pairs. 47623 records in RAM. INFO 2026-06-04 21:48:57 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:48,574,676 INFO 2026-06-04 21:48:57 MarkDuplicates Tracking 952409 as yet unmatched pairs. 48674 records in RAM. INFO 2026-06-04 21:48:58 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:48,592,144 INFO 2026-06-04 21:48:58 MarkDuplicates Tracking 953003 as yet unmatched pairs. 49254 records in RAM. INFO 2026-06-04 21:49:00 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,117 INFO 2026-06-04 21:49:00 MarkDuplicates Tracking 943616 as yet unmatched pairs. 39858 records in RAM. INFO 2026-06-04 21:49:02 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:51,988,555 INFO 2026-06-04 21:49:02 MarkDuplicates Tracking 941786 as yet unmatched pairs. 38016 records in RAM. INFO 2026-06-04 21:49:04 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:52,525,210 INFO 2026-06-04 21:49:04 MarkDuplicates Tracking 939989 as yet unmatched pairs. 36212 records in RAM. INFO 2026-06-04 21:49:06 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,532 INFO 2026-06-04 21:49:06 MarkDuplicates Tracking 938300 as yet unmatched pairs. 34510 records in RAM. INFO 2026-06-04 21:49:08 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:96,617,432 INFO 2026-06-04 21:49:08 MarkDuplicates Tracking 935939 as yet unmatched pairs. 32124 records in RAM. INFO 2026-06-04 21:49:09 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:100,748,176 INFO 2026-06-04 21:49:09 MarkDuplicates Tracking 936710 as yet unmatched pairs. 32882 records in RAM. INFO 2026-06-04 21:49:11 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:108,167,792 INFO 2026-06-04 21:49:11 MarkDuplicates Tracking 933138 as yet unmatched pairs. 29288 records in RAM. INFO 2026-06-04 21:49:12 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:119,863,537 INFO 2026-06-04 21:49:12 MarkDuplicates Tracking 930903 as yet unmatched pairs. 27040 records in RAM. INFO 2026-06-04 21:49:15 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:123,528,458 INFO 2026-06-04 21:49:15 MarkDuplicates Tracking 929454 as yet unmatched pairs. 25570 records in RAM. INFO 2026-06-04 21:49:16 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:127,016,647 INFO 2026-06-04 21:49:16 MarkDuplicates Tracking 927497 as yet unmatched pairs. 23600 records in RAM. INFO 2026-06-04 21:49:18 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:128,910,098 INFO 2026-06-04 21:49:18 MarkDuplicates Tracking 924845 as yet unmatched pairs. 20921 records in RAM. INFO 2026-06-04 21:49:19 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:131,471,204 INFO 2026-06-04 21:49:19 MarkDuplicates Tracking 923252 as yet unmatched pairs. 19317 records in RAM. INFO 2026-06-04 21:49:21 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:139,517,552 INFO 2026-06-04 21:49:21 MarkDuplicates Tracking 927001 as yet unmatched pairs. 23056 records in RAM. INFO 2026-06-04 21:49:23 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:149,162,715 INFO 2026-06-04 21:49:23 MarkDuplicates Tracking 919171 as yet unmatched pairs. 15193 records in RAM. INFO 2026-06-04 21:49:24 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:155,987,469 INFO 2026-06-04 21:49:24 MarkDuplicates Tracking 917211 as yet unmatched pairs. 13213 records in RAM. INFO 2026-06-04 21:49:26 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:170,128,740 INFO 2026-06-04 21:49:26 MarkDuplicates Tracking 915558 as yet unmatched pairs. 11555 records in RAM. INFO 2026-06-04 21:49:28 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:179,604,871 INFO 2026-06-04 21:49:28 MarkDuplicates Tracking 914291 as yet unmatched pairs. 10246 records in RAM. INFO 2026-06-04 21:49:30 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:184,183,488 INFO 2026-06-04 21:49:30 MarkDuplicates Tracking 915370 as yet unmatched pairs. 11311 records in RAM. INFO 2026-06-04 21:49:31 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:184,327,880 INFO 2026-06-04 21:49:31 MarkDuplicates Tracking 910934 as yet unmatched pairs. 6868 records in RAM. INFO 2026-06-04 21:49:34 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,520 INFO 2026-06-04 21:49:34 MarkDuplicates Tracking 908459 as yet unmatched pairs. 4375 records in RAM. INFO 2026-06-04 21:49:35 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:194,658,957 INFO 2026-06-04 21:49:35 MarkDuplicates Tracking 906398 as yet unmatched pairs. 2280 records in RAM. INFO 2026-06-04 21:49:37 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:197,954,083 INFO 2026-06-04 21:49:37 MarkDuplicates Tracking 904461 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-04 21:49:38 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,569 INFO 2026-06-04 21:49:38 MarkDuplicates Tracking 902337 as yet unmatched pairs. 27645 records in RAM. INFO 2026-06-04 21:49:41 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr4:3,211,928 INFO 2026-06-04 21:49:41 MarkDuplicates Tracking 900179 as yet unmatched pairs. 25474 records in RAM. INFO 2026-06-04 21:49:42 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:7,800,590 INFO 2026-06-04 21:49:42 MarkDuplicates Tracking 899311 as yet unmatched pairs. 24594 records in RAM. INFO 2026-06-04 21:49:44 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:15,935,933 INFO 2026-06-04 21:49:44 MarkDuplicates Tracking 899144 as yet unmatched pairs. 24421 records in RAM. INFO 2026-06-04 21:49:46 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:37,686,224 INFO 2026-06-04 21:49:46 MarkDuplicates Tracking 894141 as yet unmatched pairs. 19404 records in RAM. INFO 2026-06-04 21:49:47 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:41,990,751 INFO 2026-06-04 21:49:47 MarkDuplicates Tracking 892635 as yet unmatched pairs. 17879 records in RAM. INFO 2026-06-04 21:49:49 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:56,911,297 INFO 2026-06-04 21:49:49 MarkDuplicates Tracking 890571 as yet unmatched pairs. 15796 records in RAM. INFO 2026-06-04 21:49:50 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:74,038,571 INFO 2026-06-04 21:49:50 MarkDuplicates Tracking 888529 as yet unmatched pairs. 13743 records in RAM. INFO 2026-06-04 21:49:52 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:81,442,340 INFO 2026-06-04 21:49:52 MarkDuplicates Tracking 887064 as yet unmatched pairs. 12265 records in RAM. INFO 2026-06-04 21:49:54 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:87,493,909 INFO 2026-06-04 21:49:54 MarkDuplicates Tracking 885550 as yet unmatched pairs. 10739 records in RAM. INFO 2026-06-04 21:49:55 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:102,797,338 INFO 2026-06-04 21:49:55 MarkDuplicates Tracking 887272 as yet unmatched pairs. 12448 records in RAM. INFO 2026-06-04 21:49:57 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:118,815,461 INFO 2026-06-04 21:49:57 MarkDuplicates Tracking 881700 as yet unmatched pairs. 6861 records in RAM. INFO 2026-06-04 21:49:59 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:139,359,808 INFO 2026-06-04 21:49:59 MarkDuplicates Tracking 880099 as yet unmatched pairs. 5239 records in RAM. INFO 2026-06-04 21:50:00 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:153,781,549 INFO 2026-06-04 21:50:00 MarkDuplicates Tracking 878326 as yet unmatched pairs. 3449 records in RAM. INFO 2026-06-04 21:50:02 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:184,657,168 INFO 2026-06-04 21:50:02 MarkDuplicates Tracking 875748 as yet unmatched pairs. 845 records in RAM. INFO 2026-06-04 21:50:05 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:1,501,530 INFO 2026-06-04 21:50:05 MarkDuplicates Tracking 874338 as yet unmatched pairs. 44742 records in RAM. INFO 2026-06-04 21:50:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:14,297,071 INFO 2026-06-04 21:50:06 MarkDuplicates Tracking 873651 as yet unmatched pairs. 44044 records in RAM. INFO 2026-06-04 21:50:09 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:14,498,095 INFO 2026-06-04 21:50:09 MarkDuplicates Tracking 870687 as yet unmatched pairs. 41066 records in RAM. INFO 2026-06-04 21:50:10 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:33,162,213 INFO 2026-06-04 21:50:10 MarkDuplicates Tracking 867878 as yet unmatched pairs. 38245 records in RAM. INFO 2026-06-04 21:50:12 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:39,376,900 INFO 2026-06-04 21:50:12 MarkDuplicates Tracking 866524 as yet unmatched pairs. 36876 records in RAM. INFO 2026-06-04 21:50:13 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:55,327,738 INFO 2026-06-04 21:50:13 MarkDuplicates Tracking 864278 as yet unmatched pairs. 34620 records in RAM. INFO 2026-06-04 21:50:15 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:72,193,995 INFO 2026-06-04 21:50:15 MarkDuplicates Tracking 862747 as yet unmatched pairs. 33074 records in RAM. INFO 2026-06-04 21:50:17 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:80,202,904 INFO 2026-06-04 21:50:17 MarkDuplicates Tracking 861168 as yet unmatched pairs. 31478 records in RAM. INFO 2026-06-04 21:50:18 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:95,484,828 INFO 2026-06-04 21:50:18 MarkDuplicates Tracking 859290 as yet unmatched pairs. 29592 records in RAM. INFO 2026-06-04 21:50:20 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:113,143,189 INFO 2026-06-04 21:50:20 MarkDuplicates Tracking 857378 as yet unmatched pairs. 27673 records in RAM. INFO 2026-06-04 21:50:21 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:132,927,173 INFO 2026-06-04 21:50:21 MarkDuplicates Tracking 856072 as yet unmatched pairs. 26347 records in RAM. INFO 2026-06-04 21:50:23 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:136,060,915 INFO 2026-06-04 21:50:23 MarkDuplicates Tracking 860439 as yet unmatched pairs. 30701 records in RAM. INFO 2026-06-04 21:50:25 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:140,360,832 INFO 2026-06-04 21:50:25 MarkDuplicates Tracking 851572 as yet unmatched pairs. 21807 records in RAM. INFO 2026-06-04 21:50:26 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:141,956,422 INFO 2026-06-04 21:50:26 MarkDuplicates Tracking 849743 as yet unmatched pairs. 19969 records in RAM. INFO 2026-06-04 21:50:28 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:150,125,530 INFO 2026-06-04 21:50:28 MarkDuplicates Tracking 848590 as yet unmatched pairs. 18801 records in RAM. INFO 2026-06-04 21:50:29 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,608 INFO 2026-06-04 21:50:29 MarkDuplicates Tracking 872246 as yet unmatched pairs. 42449 records in RAM. INFO 2026-06-04 21:50:31 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,286 INFO 2026-06-04 21:50:31 MarkDuplicates Tracking 879524 as yet unmatched pairs. 49720 records in RAM. INFO 2026-06-04 21:50:33 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,988 INFO 2026-06-04 21:50:33 MarkDuplicates Tracking 843316 as yet unmatched pairs. 13499 records in RAM. INFO 2026-06-04 21:50:34 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:151,671,593 INFO 2026-06-04 21:50:34 MarkDuplicates Tracking 841952 as yet unmatched pairs. 12120 records in RAM. INFO 2026-06-04 21:50:36 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:168,218,412 INFO 2026-06-04 21:50:36 MarkDuplicates Tracking 838157 as yet unmatched pairs. 8319 records in RAM. INFO 2026-06-04 21:50:37 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:172,082,411 INFO 2026-06-04 21:50:37 MarkDuplicates Tracking 836295 as yet unmatched pairs. 6452 records in RAM. INFO 2026-06-04 21:50:40 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:177,458,700 INFO 2026-06-04 21:50:40 MarkDuplicates Tracking 834570 as yet unmatched pairs. 4718 records in RAM. INFO 2026-06-04 21:50:42 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,392 INFO 2026-06-04 21:50:42 MarkDuplicates Tracking 832522 as yet unmatched pairs. 2665 records in RAM. INFO 2026-06-04 21:50:44 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,525 INFO 2026-06-04 21:50:44 MarkDuplicates Tracking 831326 as yet unmatched pairs. 1444 records in RAM. INFO 2026-06-04 21:50:46 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:6,305,495 INFO 2026-06-04 21:50:46 MarkDuplicates Tracking 829058 as yet unmatched pairs. 57258 records in RAM. INFO 2026-06-04 21:50:47 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:7,583,965 INFO 2026-06-04 21:50:47 MarkDuplicates Tracking 827032 as yet unmatched pairs. 55213 records in RAM. INFO 2026-06-04 21:50:49 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:17,665,324 INFO 2026-06-04 21:50:49 MarkDuplicates Tracking 824529 as yet unmatched pairs. 52702 records in RAM. INFO 2026-06-04 21:50:51 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,118 INFO 2026-06-04 21:50:51 MarkDuplicates Tracking 822603 as yet unmatched pairs. 50757 records in RAM. INFO 2026-06-04 21:50:52 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:27,893,622 INFO 2026-06-04 21:50:52 MarkDuplicates Tracking 821067 as yet unmatched pairs. 49217 records in RAM. INFO 2026-06-04 21:50:54 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:30,492,424 INFO 2026-06-04 21:50:54 MarkDuplicates Tracking 819767 as yet unmatched pairs. 47907 records in RAM. INFO 2026-06-04 21:50:55 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:30,925,607 INFO 2026-06-04 21:50:55 MarkDuplicates Tracking 817076 as yet unmatched pairs. 45205 records in RAM. INFO 2026-06-04 21:50:57 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,629,305 INFO 2026-06-04 21:50:57 MarkDuplicates Tracking 815386 as yet unmatched pairs. 43500 records in RAM. INFO 2026-06-04 21:50:58 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,023 INFO 2026-06-04 21:50:58 MarkDuplicates Tracking 813681 as yet unmatched pairs. 41795 records in RAM. INFO 2026-06-04 21:50:59 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,620 INFO 2026-06-04 21:50:59 MarkDuplicates Tracking 815809 as yet unmatched pairs. 43922 records in RAM. INFO 2026-06-04 21:51:01 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,591 INFO 2026-06-04 21:51:01 MarkDuplicates Tracking 811494 as yet unmatched pairs. 39603 records in RAM. INFO 2026-06-04 21:51:02 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:32,841,651 INFO 2026-06-04 21:51:02 MarkDuplicates Tracking 809288 as yet unmatched pairs. 37391 records in RAM. INFO 2026-06-04 21:51:04 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,292 INFO 2026-06-04 21:51:04 MarkDuplicates Tracking 809301 as yet unmatched pairs. 37401 records in RAM. INFO 2026-06-04 21:51:06 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:34,762,617 INFO 2026-06-04 21:51:06 MarkDuplicates Tracking 806308 as yet unmatched pairs. 34396 records in RAM. INFO 2026-06-04 21:51:07 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:38,345,077 INFO 2026-06-04 21:51:07 MarkDuplicates Tracking 803194 as yet unmatched pairs. 31270 records in RAM. INFO 2026-06-04 21:51:10 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr6:43,143,475 INFO 2026-06-04 21:51:10 MarkDuplicates Tracking 802442 as yet unmatched pairs. 30513 records in RAM. INFO 2026-06-04 21:51:11 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:44,250,101 INFO 2026-06-04 21:51:11 MarkDuplicates Tracking 799772 as yet unmatched pairs. 27830 records in RAM. INFO 2026-06-04 21:51:13 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:56,498,000 INFO 2026-06-04 21:51:13 MarkDuplicates Tracking 797568 as yet unmatched pairs. 25588 records in RAM. INFO 2026-06-04 21:51:15 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,919 INFO 2026-06-04 21:51:15 MarkDuplicates Tracking 797398 as yet unmatched pairs. 25409 records in RAM. INFO 2026-06-04 21:51:16 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:75,113,636 INFO 2026-06-04 21:51:16 MarkDuplicates Tracking 794034 as yet unmatched pairs. 22033 records in RAM. INFO 2026-06-04 21:51:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:85,614,984 INFO 2026-06-04 21:51:18 MarkDuplicates Tracking 791975 as yet unmatched pairs. 19967 records in RAM. INFO 2026-06-04 21:51:20 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:106,512,533 INFO 2026-06-04 21:51:20 MarkDuplicates Tracking 790263 as yet unmatched pairs. 18245 records in RAM. INFO 2026-06-04 21:51:21 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:112,142,176 INFO 2026-06-04 21:51:21 MarkDuplicates Tracking 788395 as yet unmatched pairs. 16353 records in RAM. INFO 2026-06-04 21:51:23 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:125,058,057 INFO 2026-06-04 21:51:23 MarkDuplicates Tracking 786207 as yet unmatched pairs. 14138 records in RAM. INFO 2026-06-04 21:51:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:137,206,195 INFO 2026-06-04 21:51:24 MarkDuplicates Tracking 785868 as yet unmatched pairs. 13784 records in RAM. INFO 2026-06-04 21:51:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:143,504,199 INFO 2026-06-04 21:51:26 MarkDuplicates Tracking 782556 as yet unmatched pairs. 10461 records in RAM. INFO 2026-06-04 21:51:28 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,671 INFO 2026-06-04 21:51:28 MarkDuplicates Tracking 781615 as yet unmatched pairs. 9513 records in RAM. INFO 2026-06-04 21:51:29 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:158,560,138 INFO 2026-06-04 21:51:29 MarkDuplicates Tracking 778457 as yet unmatched pairs. 6349 records in RAM. INFO 2026-06-04 21:51:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,401 INFO 2026-06-04 21:51:31 MarkDuplicates Tracking 781677 as yet unmatched pairs. 9562 records in RAM. INFO 2026-06-04 21:51:32 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,790 INFO 2026-06-04 21:51:32 MarkDuplicates Tracking 777170 as yet unmatched pairs. 5047 records in RAM. INFO 2026-06-04 21:51:34 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,369 INFO 2026-06-04 21:51:34 MarkDuplicates Tracking 772776 as yet unmatched pairs. 639 records in RAM. INFO 2026-06-04 21:51:36 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:2,355,315 INFO 2026-06-04 21:51:36 MarkDuplicates Tracking 771281 as yet unmatched pairs. 62270 records in RAM. INFO 2026-06-04 21:51:38 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:5,370,788 INFO 2026-06-04 21:51:38 MarkDuplicates Tracking 768521 as yet unmatched pairs. 59499 records in RAM. INFO 2026-06-04 21:51:40 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,109 INFO 2026-06-04 21:51:40 MarkDuplicates Tracking 796726 as yet unmatched pairs. 87696 records in RAM. INFO 2026-06-04 21:51:42 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,257 INFO 2026-06-04 21:51:42 MarkDuplicates Tracking 787132 as yet unmatched pairs. 78098 records in RAM. INFO 2026-06-04 21:51:43 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:5,900,471 INFO 2026-06-04 21:51:43 MarkDuplicates Tracking 761792 as yet unmatched pairs. 52750 records in RAM. INFO 2026-06-04 21:51:45 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,654 INFO 2026-06-04 21:51:45 MarkDuplicates Tracking 761403 as yet unmatched pairs. 52354 records in RAM. INFO 2026-06-04 21:51:47 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,846 INFO 2026-06-04 21:51:47 MarkDuplicates Tracking 760168 as yet unmatched pairs. 51112 records in RAM. INFO 2026-06-04 21:51:49 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:33,146,335 INFO 2026-06-04 21:51:49 MarkDuplicates Tracking 756179 as yet unmatched pairs. 47113 records in RAM. INFO 2026-06-04 21:51:50 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:43,792,713 INFO 2026-06-04 21:51:50 MarkDuplicates Tracking 754681 as yet unmatched pairs. 45600 records in RAM. INFO 2026-06-04 21:51:52 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,755 INFO 2026-06-04 21:51:52 MarkDuplicates Tracking 752826 as yet unmatched pairs. 43738 records in RAM. INFO 2026-06-04 21:51:53 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:54,752,361 INFO 2026-06-04 21:51:53 MarkDuplicates Tracking 770310 as yet unmatched pairs. 61211 records in RAM. INFO 2026-06-04 21:51:55 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:55,152,588 INFO 2026-06-04 21:51:55 MarkDuplicates Tracking 755905 as yet unmatched pairs. 46785 records in RAM. INFO 2026-06-04 21:51:57 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:55,163,753 INFO 2026-06-04 21:51:57 MarkDuplicates Tracking 758186 as yet unmatched pairs. 49057 records in RAM. INFO 2026-06-04 21:51:58 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:55,198,810 INFO 2026-06-04 21:51:58 MarkDuplicates Tracking 752437 as yet unmatched pairs. 43302 records in RAM. INFO 2026-06-04 21:52:00 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:55,553,816 INFO 2026-06-04 21:52:00 MarkDuplicates Tracking 742590 as yet unmatched pairs. 33454 records in RAM. INFO 2026-06-04 21:52:02 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,218 INFO 2026-06-04 21:52:02 MarkDuplicates Tracking 741070 as yet unmatched pairs. 31912 records in RAM. INFO 2026-06-04 21:52:03 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:75,441,091 INFO 2026-06-04 21:52:03 MarkDuplicates Tracking 740060 as yet unmatched pairs. 30889 records in RAM. INFO 2026-06-04 21:52:05 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,823 INFO 2026-06-04 21:52:05 MarkDuplicates Tracking 750096 as yet unmatched pairs. 40922 records in RAM. INFO 2026-06-04 21:52:07 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr7:87,174,658 INFO 2026-06-04 21:52:07 MarkDuplicates Tracking 735880 as yet unmatched pairs. 26693 records in RAM. INFO 2026-06-04 21:52:09 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,562 INFO 2026-06-04 21:52:09 MarkDuplicates Tracking 745663 as yet unmatched pairs. 36468 records in RAM. INFO 2026-06-04 21:52:11 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr7:94,420,546 INFO 2026-06-04 21:52:11 MarkDuplicates Tracking 736021 as yet unmatched pairs. 26804 records in RAM. INFO 2026-06-04 21:52:13 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:96,277,298 INFO 2026-06-04 21:52:13 MarkDuplicates Tracking 729985 as yet unmatched pairs. 20762 records in RAM. INFO 2026-06-04 21:52:14 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:100,155,328 INFO 2026-06-04 21:52:14 MarkDuplicates Tracking 728040 as yet unmatched pairs. 18807 records in RAM. INFO 2026-06-04 21:52:16 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,518 INFO 2026-06-04 21:52:16 MarkDuplicates Tracking 728658 as yet unmatched pairs. 19422 records in RAM. INFO 2026-06-04 21:52:17 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:102,567,062 INFO 2026-06-04 21:52:17 MarkDuplicates Tracking 724710 as yet unmatched pairs. 15470 records in RAM. INFO 2026-06-04 21:52:19 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:107,758,367 INFO 2026-06-04 21:52:19 MarkDuplicates Tracking 722645 as yet unmatched pairs. 13400 records in RAM. INFO 2026-06-04 21:52:21 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:116,731,770 INFO 2026-06-04 21:52:21 MarkDuplicates Tracking 721894 as yet unmatched pairs. 12636 records in RAM. INFO 2026-06-04 21:52:22 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:127,721,345 INFO 2026-06-04 21:52:22 MarkDuplicates Tracking 721803 as yet unmatched pairs. 12539 records in RAM. INFO 2026-06-04 21:52:24 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:131,437,884 INFO 2026-06-04 21:52:24 MarkDuplicates Tracking 717230 as yet unmatched pairs. 7953 records in RAM. INFO 2026-06-04 21:52:25 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:139,417,618 INFO 2026-06-04 21:52:25 MarkDuplicates Tracking 715398 as yet unmatched pairs. 6094 records in RAM. INFO 2026-06-04 21:52:27 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:143,876,264 INFO 2026-06-04 21:52:27 MarkDuplicates Tracking 713560 as yet unmatched pairs. 4253 records in RAM. INFO 2026-06-04 21:52:28 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:150,796,493 INFO 2026-06-04 21:52:28 MarkDuplicates Tracking 711875 as yet unmatched pairs. 2558 records in RAM. INFO 2026-06-04 21:52:30 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:157,225,520 INFO 2026-06-04 21:52:30 MarkDuplicates Tracking 710216 as yet unmatched pairs. 890 records in RAM. INFO 2026-06-04 21:52:32 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr8:11,847,721 INFO 2026-06-04 21:52:32 MarkDuplicates Tracking 716123 as yet unmatched pairs. 51452 records in RAM. INFO 2026-06-04 21:52:33 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:22,249,141 INFO 2026-06-04 21:52:33 MarkDuplicates Tracking 706156 as yet unmatched pairs. 41468 records in RAM. INFO 2026-06-04 21:52:35 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr8:27,442,926 INFO 2026-06-04 21:52:35 MarkDuplicates Tracking 703991 as yet unmatched pairs. 39297 records in RAM. INFO 2026-06-04 21:52:37 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,415,915 INFO 2026-06-04 21:52:37 MarkDuplicates Tracking 702647 as yet unmatched pairs. 37942 records in RAM. INFO 2026-06-04 21:52:38 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,421 INFO 2026-06-04 21:52:38 MarkDuplicates Tracking 702273 as yet unmatched pairs. 37563 records in RAM. INFO 2026-06-04 21:52:40 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr8:54,022,126 INFO 2026-06-04 21:52:40 MarkDuplicates Tracking 698095 as yet unmatched pairs. 33383 records in RAM. INFO 2026-06-04 21:52:43 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr8:65,707,965 INFO 2026-06-04 21:52:43 MarkDuplicates Tracking 696197 as yet unmatched pairs. 31481 records in RAM. INFO 2026-06-04 21:52:44 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:74,321,015 INFO 2026-06-04 21:52:44 MarkDuplicates Tracking 694325 as yet unmatched pairs. 29598 records in RAM. INFO 2026-06-04 21:52:46 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:94,841,544 INFO 2026-06-04 21:52:46 MarkDuplicates Tracking 692871 as yet unmatched pairs. 28137 records in RAM. INFO 2026-06-04 21:52:47 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,968 INFO 2026-06-04 21:52:47 MarkDuplicates Tracking 694607 as yet unmatched pairs. 29865 records in RAM. INFO 2026-06-04 21:52:49 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr8:102,272,538 INFO 2026-06-04 21:52:49 MarkDuplicates Tracking 689563 as yet unmatched pairs. 24814 records in RAM. INFO 2026-06-04 21:52:51 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:115,619,889 INFO 2026-06-04 21:52:51 MarkDuplicates Tracking 686947 as yet unmatched pairs. 22190 records in RAM. INFO 2026-06-04 21:52:52 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:123,810,238 INFO 2026-06-04 21:52:52 MarkDuplicates Tracking 685538 as yet unmatched pairs. 20766 records in RAM. INFO 2026-06-04 21:52:54 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:131,977,047 INFO 2026-06-04 21:52:54 MarkDuplicates Tracking 683209 as yet unmatched pairs. 18426 records in RAM. INFO 2026-06-04 21:52:56 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:133,262,085 INFO 2026-06-04 21:52:56 MarkDuplicates Tracking 685071 as yet unmatched pairs. 20280 records in RAM. INFO 2026-06-04 21:52:57 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,269,363 INFO 2026-06-04 21:52:57 MarkDuplicates Tracking 678846 as yet unmatched pairs. 14036 records in RAM. INFO 2026-06-04 21:52:59 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,975 INFO 2026-06-04 21:52:59 MarkDuplicates Tracking 676708 as yet unmatched pairs. 11893 records in RAM. INFO 2026-06-04 21:53:00 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,784 INFO 2026-06-04 21:53:00 MarkDuplicates Tracking 681146 as yet unmatched pairs. 16325 records in RAM. INFO 2026-06-04 21:53:02 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,541 INFO 2026-06-04 21:53:02 MarkDuplicates Tracking 674060 as yet unmatched pairs. 9234 records in RAM. INFO 2026-06-04 21:53:03 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,051 INFO 2026-06-04 21:53:03 MarkDuplicates Tracking 675218 as yet unmatched pairs. 10381 records in RAM. INFO 2026-06-04 21:53:05 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:144,106,885 INFO 2026-06-04 21:53:05 MarkDuplicates Tracking 667877 as yet unmatched pairs. 3039 records in RAM. INFO 2026-06-04 21:53:06 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,376 INFO 2026-06-04 21:53:06 MarkDuplicates Tracking 667074 as yet unmatched pairs. 2230 records in RAM. INFO 2026-06-04 21:53:09 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr9:19,116,534 INFO 2026-06-04 21:53:09 MarkDuplicates Tracking 664224 as yet unmatched pairs. 38753 records in RAM. INFO 2026-06-04 21:53:10 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:33,463,044 INFO 2026-06-04 21:53:10 MarkDuplicates Tracking 661461 as yet unmatched pairs. 35978 records in RAM. INFO 2026-06-04 21:53:12 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,607,598 INFO 2026-06-04 21:53:12 MarkDuplicates Tracking 660470 as yet unmatched pairs. 34975 records in RAM. INFO 2026-06-04 21:53:14 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr9:35,711,380 INFO 2026-06-04 21:53:14 MarkDuplicates Tracking 660177 as yet unmatched pairs. 34681 records in RAM. INFO 2026-06-04 21:53:16 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:36,197,553 INFO 2026-06-04 21:53:16 MarkDuplicates Tracking 656497 as yet unmatched pairs. 31000 records in RAM. INFO 2026-06-04 21:53:17 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr9:69,174,345 INFO 2026-06-04 21:53:17 MarkDuplicates Tracking 654268 as yet unmatched pairs. 28753 records in RAM. INFO 2026-06-04 21:53:19 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,854 INFO 2026-06-04 21:53:19 MarkDuplicates Tracking 652938 as yet unmatched pairs. 27402 records in RAM. INFO 2026-06-04 21:53:20 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:92,242,283 INFO 2026-06-04 21:53:20 MarkDuplicates Tracking 651239 as yet unmatched pairs. 25690 records in RAM. INFO 2026-06-04 21:53:22 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr9:98,200,294 INFO 2026-06-04 21:53:22 MarkDuplicates Tracking 648816 as yet unmatched pairs. 23260 records in RAM. INFO 2026-06-04 21:53:24 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr9:105,365,522 INFO 2026-06-04 21:53:24 MarkDuplicates Tracking 647219 as yet unmatched pairs. 21654 records in RAM. INFO 2026-06-04 21:53:25 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:112,262,476 INFO 2026-06-04 21:53:25 MarkDuplicates Tracking 645543 as yet unmatched pairs. 19953 records in RAM. INFO 2026-06-04 21:53:27 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:115,031,571 INFO 2026-06-04 21:53:27 MarkDuplicates Tracking 645283 as yet unmatched pairs. 19688 records in RAM. INFO 2026-06-04 21:53:28 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,478 INFO 2026-06-04 21:53:28 MarkDuplicates Tracking 648453 as yet unmatched pairs. 22849 records in RAM. INFO 2026-06-04 21:53:30 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:121,327,381 INFO 2026-06-04 21:53:30 MarkDuplicates Tracking 639764 as yet unmatched pairs. 14156 records in RAM. INFO 2026-06-04 21:53:32 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:125,240,868 INFO 2026-06-04 21:53:32 MarkDuplicates Tracking 638676 as yet unmatched pairs. 13059 records in RAM. INFO 2026-06-04 21:53:33 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:128,492,431 INFO 2026-06-04 21:53:33 MarkDuplicates Tracking 634994 as yet unmatched pairs. 9360 records in RAM. INFO 2026-06-04 21:53:35 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:130,880,502 INFO 2026-06-04 21:53:35 MarkDuplicates Tracking 633921 as yet unmatched pairs. 8275 records in RAM. INFO 2026-06-04 21:53:37 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:133,992,241 INFO 2026-06-04 21:53:37 MarkDuplicates Tracking 631197 as yet unmatched pairs. 5521 records in RAM. INFO 2026-06-04 21:53:38 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:134,818,880 INFO 2026-06-04 21:53:38 MarkDuplicates Tracking 630186 as yet unmatched pairs. 4494 records in RAM. INFO 2026-06-04 21:53:40 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:136,941,306 INFO 2026-06-04 21:53:40 MarkDuplicates Tracking 627312 as yet unmatched pairs. 1613 records in RAM. INFO 2026-06-04 21:53:42 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr10:3,157,504 INFO 2026-06-04 21:53:42 MarkDuplicates Tracking 625332 as yet unmatched pairs. 39901 records in RAM. INFO 2026-06-04 21:53:44 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr10:6,215,262 INFO 2026-06-04 21:53:44 MarkDuplicates Tracking 624283 as yet unmatched pairs. 38848 records in RAM. INFO 2026-06-04 21:53:46 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,851 INFO 2026-06-04 21:53:46 MarkDuplicates Tracking 622534 as yet unmatched pairs. 37088 records in RAM. INFO 2026-06-04 21:53:47 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,848 INFO 2026-06-04 21:53:47 MarkDuplicates Tracking 620162 as yet unmatched pairs. 34708 records in RAM. INFO 2026-06-04 21:53:49 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,299 INFO 2026-06-04 21:53:49 MarkDuplicates Tracking 620188 as yet unmatched pairs. 34728 records in RAM. INFO 2026-06-04 21:53:51 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:32,920,304 INFO 2026-06-04 21:53:51 MarkDuplicates Tracking 622516 as yet unmatched pairs. 37054 records in RAM. INFO 2026-06-04 21:53:52 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:43,386,975 INFO 2026-06-04 21:53:52 MarkDuplicates Tracking 613973 as yet unmatched pairs. 28506 records in RAM. INFO 2026-06-04 21:53:54 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:46,816,513 INFO 2026-06-04 21:53:54 MarkDuplicates Tracking 612332 as yet unmatched pairs. 26857 records in RAM. INFO 2026-06-04 21:53:55 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:63,183,539 INFO 2026-06-04 21:53:55 MarkDuplicates Tracking 610582 as yet unmatched pairs. 25098 records in RAM. INFO 2026-06-04 21:53:57 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr10:70,868,383 INFO 2026-06-04 21:53:57 MarkDuplicates Tracking 609306 as yet unmatched pairs. 23810 records in RAM. INFO 2026-06-04 21:53:59 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr10:73,789,081 INFO 2026-06-04 21:53:59 MarkDuplicates Tracking 606792 as yet unmatched pairs. 21288 records in RAM. INFO 2026-06-04 21:54:00 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr10:77,999,991 INFO 2026-06-04 21:54:00 MarkDuplicates Tracking 604681 as yet unmatched pairs. 19163 records in RAM. INFO 2026-06-04 21:54:02 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:87,792,746 INFO 2026-06-04 21:54:02 MarkDuplicates Tracking 603140 as yet unmatched pairs. 17600 records in RAM. INFO 2026-06-04 21:54:03 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:93,431,516 INFO 2026-06-04 21:54:03 MarkDuplicates Tracking 601816 as yet unmatched pairs. 16265 records in RAM. INFO 2026-06-04 21:54:05 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:97,484,109 INFO 2026-06-04 21:54:05 MarkDuplicates Tracking 599178 as yet unmatched pairs. 13613 records in RAM. INFO 2026-06-04 21:54:06 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:102,140,796 INFO 2026-06-04 21:54:06 MarkDuplicates Tracking 597349 as yet unmatched pairs. 11773 records in RAM. INFO 2026-06-04 21:54:08 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:103,801,340 INFO 2026-06-04 21:54:08 MarkDuplicates Tracking 595791 as yet unmatched pairs. 10211 records in RAM. INFO 2026-06-04 21:54:10 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:104,055,976 INFO 2026-06-04 21:54:10 MarkDuplicates Tracking 598457 as yet unmatched pairs. 12868 records in RAM. INFO 2026-06-04 21:54:11 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:110,890,596 INFO 2026-06-04 21:54:11 MarkDuplicates Tracking 591653 as yet unmatched pairs. 6060 records in RAM. INFO 2026-06-04 21:54:13 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:119,582,542 INFO 2026-06-04 21:54:13 MarkDuplicates Tracking 590272 as yet unmatched pairs. 4671 records in RAM. INFO 2026-06-04 21:54:15 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:126,017,281 INFO 2026-06-04 21:54:15 MarkDuplicates Tracking 587637 as yet unmatched pairs. 2019 records in RAM. INFO 2026-06-04 21:54:17 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr11:212,638 INFO 2026-06-04 21:54:17 MarkDuplicates Tracking 585827 as yet unmatched pairs. 78670 records in RAM. INFO 2026-06-04 21:54:18 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:320,618 INFO 2026-06-04 21:54:18 MarkDuplicates Tracking 597842 as yet unmatched pairs. 90685 records in RAM. INFO 2026-06-04 21:54:20 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:810,261 INFO 2026-06-04 21:54:20 MarkDuplicates Tracking 582835 as yet unmatched pairs. 75672 records in RAM. INFO 2026-06-04 21:54:22 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,323 INFO 2026-06-04 21:54:22 MarkDuplicates Tracking 590085 as yet unmatched pairs. 82916 records in RAM. INFO 2026-06-04 21:54:24 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr11:6,211,815 INFO 2026-06-04 21:54:24 MarkDuplicates Tracking 577623 as yet unmatched pairs. 70452 records in RAM. INFO 2026-06-04 21:54:25 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:9,203,673 INFO 2026-06-04 21:54:25 MarkDuplicates Tracking 575932 as yet unmatched pairs. 68754 records in RAM. INFO 2026-06-04 21:54:27 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr11:10,803,070 INFO 2026-06-04 21:54:27 MarkDuplicates Tracking 577259 as yet unmatched pairs. 70076 records in RAM. INFO 2026-06-04 21:54:29 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:16,754,898 INFO 2026-06-04 21:54:29 MarkDuplicates Tracking 572213 as yet unmatched pairs. 65020 records in RAM. INFO 2026-06-04 21:54:31 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:31,632,216 INFO 2026-06-04 21:54:31 MarkDuplicates Tracking 569702 as yet unmatched pairs. 62508 records in RAM. INFO 2026-06-04 21:54:32 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:35,176,625 INFO 2026-06-04 21:54:32 MarkDuplicates Tracking 574200 as yet unmatched pairs. 66995 records in RAM. INFO 2026-06-04 21:54:34 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:44,197,950 INFO 2026-06-04 21:54:34 MarkDuplicates Tracking 566722 as yet unmatched pairs. 59509 records in RAM. INFO 2026-06-04 21:54:36 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:47,378,326 INFO 2026-06-04 21:54:36 MarkDuplicates Tracking 564297 as yet unmatched pairs. 57070 records in RAM. INFO 2026-06-04 21:54:37 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:57,528,705 INFO 2026-06-04 21:54:37 MarkDuplicates Tracking 562178 as yet unmatched pairs. 54946 records in RAM. INFO 2026-06-04 21:54:39 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:59,699,753 INFO 2026-06-04 21:54:39 MarkDuplicates Tracking 560191 as yet unmatched pairs. 52956 records in RAM. INFO 2026-06-04 21:54:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:61,523,136 INFO 2026-06-04 21:54:41 MarkDuplicates Tracking 558399 as yet unmatched pairs. 51155 records in RAM. INFO 2026-06-04 21:54:42 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,496 INFO 2026-06-04 21:54:42 MarkDuplicates Tracking 559640 as yet unmatched pairs. 52395 records in RAM. INFO 2026-06-04 21:54:44 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,538 INFO 2026-06-04 21:54:44 MarkDuplicates Tracking 559390 as yet unmatched pairs. 52140 records in RAM. INFO 2026-06-04 21:54:45 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,375 INFO 2026-06-04 21:54:45 MarkDuplicates Tracking 556945 as yet unmatched pairs. 49691 records in RAM. INFO 2026-06-04 21:54:47 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,002 INFO 2026-06-04 21:54:47 MarkDuplicates Tracking 551935 as yet unmatched pairs. 44674 records in RAM. INFO 2026-06-04 21:54:49 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,881,378 INFO 2026-06-04 21:54:49 MarkDuplicates Tracking 552094 as yet unmatched pairs. 44832 records in RAM. INFO 2026-06-04 21:54:50 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:64,245,257 INFO 2026-06-04 21:54:50 MarkDuplicates Tracking 550213 as yet unmatched pairs. 42946 records in RAM. INFO 2026-06-04 21:54:52 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:64,860,287 INFO 2026-06-04 21:54:52 MarkDuplicates Tracking 545695 as yet unmatched pairs. 38423 records in RAM. INFO 2026-06-04 21:54:54 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,423,913 INFO 2026-06-04 21:54:54 MarkDuplicates Tracking 542829 as yet unmatched pairs. 35553 records in RAM. INFO 2026-06-04 21:54:55 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,635,542 INFO 2026-06-04 21:54:55 MarkDuplicates Tracking 540906 as yet unmatched pairs. 33593 records in RAM. INFO 2026-06-04 21:54:57 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:65,891,272 INFO 2026-06-04 21:54:57 MarkDuplicates Tracking 538943 as yet unmatched pairs. 31625 records in RAM. INFO 2026-06-04 21:54:59 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:66,438,701 INFO 2026-06-04 21:54:59 MarkDuplicates Tracking 536411 as yet unmatched pairs. 29086 records in RAM. INFO 2026-06-04 21:55:00 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:67,400,819 INFO 2026-06-04 21:55:00 MarkDuplicates Tracking 535372 as yet unmatched pairs. 28038 records in RAM. INFO 2026-06-04 21:55:02 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:68,262,810 INFO 2026-06-04 21:55:02 MarkDuplicates Tracking 533185 as yet unmatched pairs. 25843 records in RAM. INFO 2026-06-04 21:55:03 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:70,182,551 INFO 2026-06-04 21:55:03 MarkDuplicates Tracking 530936 as yet unmatched pairs. 23584 records in RAM. INFO 2026-06-04 21:55:05 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:72,232,247 INFO 2026-06-04 21:55:05 MarkDuplicates Tracking 528496 as yet unmatched pairs. 21142 records in RAM. INFO 2026-06-04 21:55:06 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:74,949,341 INFO 2026-06-04 21:55:06 MarkDuplicates Tracking 527377 as yet unmatched pairs. 20019 records in RAM. INFO 2026-06-04 21:55:08 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:77,016,763 INFO 2026-06-04 21:55:08 MarkDuplicates Tracking 524577 as yet unmatched pairs. 17206 records in RAM. INFO 2026-06-04 21:55:10 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:86,807,834 INFO 2026-06-04 21:55:10 MarkDuplicates Tracking 523692 as yet unmatched pairs. 16318 records in RAM. INFO 2026-06-04 21:55:11 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:95,178,734 INFO 2026-06-04 21:55:11 MarkDuplicates Tracking 520968 as yet unmatched pairs. 13588 records in RAM. INFO 2026-06-04 21:55:13 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:102,779,620 INFO 2026-06-04 21:55:13 MarkDuplicates Tracking 522431 as yet unmatched pairs. 15048 records in RAM. INFO 2026-06-04 21:55:14 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:114,062,975 INFO 2026-06-04 21:55:14 MarkDuplicates Tracking 516945 as yet unmatched pairs. 9561 records in RAM. INFO 2026-06-04 21:55:16 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:118,572,541 INFO 2026-06-04 21:55:16 MarkDuplicates Tracking 517009 as yet unmatched pairs. 9622 records in RAM. INFO 2026-06-04 21:55:18 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:119,312,052 INFO 2026-06-04 21:55:18 MarkDuplicates Tracking 513276 as yet unmatched pairs. 5883 records in RAM. INFO 2026-06-04 21:55:19 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,439 INFO 2026-06-04 21:55:19 MarkDuplicates Tracking 511745 as yet unmatched pairs. 4344 records in RAM. INFO 2026-06-04 21:55:21 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr11:128,969,130 INFO 2026-06-04 21:55:21 MarkDuplicates Tracking 509083 as yet unmatched pairs. 1673 records in RAM. INFO 2026-06-04 21:55:23 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr12:753,795 INFO 2026-06-04 21:55:23 MarkDuplicates Tracking 508004 as yet unmatched pairs. 67955 records in RAM. INFO 2026-06-04 21:55:25 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:4,659,056 INFO 2026-06-04 21:55:25 MarkDuplicates Tracking 505700 as yet unmatched pairs. 65647 records in RAM. INFO 2026-06-04 21:55:27 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:6,536,860 INFO 2026-06-04 21:55:27 MarkDuplicates Tracking 506521 as yet unmatched pairs. 66462 records in RAM. INFO 2026-06-04 21:55:29 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,113 INFO 2026-06-04 21:55:29 MarkDuplicates Tracking 503287 as yet unmatched pairs. 63224 records in RAM. INFO 2026-06-04 21:55:31 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:7,150,980 INFO 2026-06-04 21:55:31 MarkDuplicates Tracking 499837 as yet unmatched pairs. 59773 records in RAM. INFO 2026-06-04 21:55:33 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr12:8,941,890 INFO 2026-06-04 21:55:33 MarkDuplicates Tracking 498173 as yet unmatched pairs. 58108 records in RAM. INFO 2026-06-04 21:55:34 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr12:12,987,277 INFO 2026-06-04 21:55:34 MarkDuplicates Tracking 496002 as yet unmatched pairs. 55918 records in RAM. INFO 2026-06-04 21:55:37 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr12:26,922,644 INFO 2026-06-04 21:55:37 MarkDuplicates Tracking 493977 as yet unmatched pairs. 53882 records in RAM. INFO 2026-06-04 21:55:39 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr12:42,398,931 INFO 2026-06-04 21:55:39 MarkDuplicates Tracking 492504 as yet unmatched pairs. 52405 records in RAM. INFO 2026-06-04 21:55:41 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr12:47,890,808 INFO 2026-06-04 21:55:41 MarkDuplicates Tracking 490100 as yet unmatched pairs. 49990 records in RAM. INFO 2026-06-04 21:55:43 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,501 INFO 2026-06-04 21:55:43 MarkDuplicates Tracking 489496 as yet unmatched pairs. 49385 records in RAM. INFO 2026-06-04 21:55:45 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr12:49,484,639 INFO 2026-06-04 21:55:45 MarkDuplicates Tracking 487420 as yet unmatched pairs. 47308 records in RAM. INFO 2026-06-04 21:55:47 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:51,240,351 INFO 2026-06-04 21:55:47 MarkDuplicates Tracking 486372 as yet unmatched pairs. 46254 records in RAM. INFO 2026-06-04 21:55:50 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr12:52,473,638 INFO 2026-06-04 21:55:50 MarkDuplicates Tracking 485149 as yet unmatched pairs. 45029 records in RAM. INFO 2026-06-04 21:55:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr12:52,491,632 INFO 2026-06-04 21:55:52 MarkDuplicates Tracking 492352 as yet unmatched pairs. 52231 records in RAM. INFO 2026-06-04 21:55:55 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 3s. Last read position: chr12:52,515,809 INFO 2026-06-04 21:55:55 MarkDuplicates Tracking 493636 as yet unmatched pairs. 53510 records in RAM. INFO 2026-06-04 21:55:58 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr12:52,519,919 INFO 2026-06-04 21:55:58 MarkDuplicates Tracking 491174 as yet unmatched pairs. 51047 records in RAM. INFO 2026-06-04 21:56:00 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr12:53,443,544 INFO 2026-06-04 21:56:00 MarkDuplicates Tracking 478146 as yet unmatched pairs. 38012 records in RAM. INFO 2026-06-04 21:56:02 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr12:54,396,284 INFO 2026-06-04 21:56:02 MarkDuplicates Tracking 475668 as yet unmatched pairs. 35531 records in RAM. INFO 2026-06-04 21:56:05 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr12:55,819,087 INFO 2026-06-04 21:56:05 MarkDuplicates Tracking 473881 as yet unmatched pairs. 33744 records in RAM. INFO 2026-06-04 21:56:08 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr12:56,206,592 INFO 2026-06-04 21:56:08 MarkDuplicates Tracking 470854 as yet unmatched pairs. 30714 records in RAM. INFO 2026-06-04 21:56:10 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr12:57,091,154 INFO 2026-06-04 21:56:10 MarkDuplicates Tracking 469422 as yet unmatched pairs. 29275 records in RAM. INFO 2026-06-04 21:56:13 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr12:57,178,525 INFO 2026-06-04 21:56:13 MarkDuplicates Tracking 468386 as yet unmatched pairs. 28235 records in RAM. INFO 2026-06-04 21:56:15 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr12:57,525,500 INFO 2026-06-04 21:56:15 MarkDuplicates Tracking 464951 as yet unmatched pairs. 24795 records in RAM. INFO 2026-06-04 21:56:19 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 3s. Last read position: chr12:64,729,027 INFO 2026-06-04 21:56:19 MarkDuplicates Tracking 464127 as yet unmatched pairs. 23969 records in RAM. INFO 2026-06-04 21:56:22 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr12:71,782,585 INFO 2026-06-04 21:56:22 MarkDuplicates Tracking 461811 as yet unmatched pairs. 21649 records in RAM. INFO 2026-06-04 21:56:25 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 3s. Last read position: chr12:91,104,226 INFO 2026-06-04 21:56:25 MarkDuplicates Tracking 460736 as yet unmatched pairs. 20570 records in RAM. INFO 2026-06-04 21:56:28 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr12:96,951,456 INFO 2026-06-04 21:56:28 MarkDuplicates Tracking 457761 as yet unmatched pairs. 17585 records in RAM. INFO 2026-06-04 21:56:31 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 3s. Last read position: chr12:103,946,884 INFO 2026-06-04 21:56:31 MarkDuplicates Tracking 457849 as yet unmatched pairs. 17666 records in RAM. INFO 2026-06-04 21:56:33 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr12:108,623,249 INFO 2026-06-04 21:56:33 MarkDuplicates Tracking 454293 as yet unmatched pairs. 14107 records in RAM. INFO 2026-06-04 21:56:36 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr12:111,362,800 INFO 2026-06-04 21:56:36 MarkDuplicates Tracking 452031 as yet unmatched pairs. 11844 records in RAM. INFO 2026-06-04 21:56:38 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr12:113,387,005 INFO 2026-06-04 21:56:38 MarkDuplicates Tracking 450316 as yet unmatched pairs. 10127 records in RAM. INFO 2026-06-04 21:56:42 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 3s. Last read position: chr12:120,215,214 INFO 2026-06-04 21:56:42 MarkDuplicates Tracking 448910 as yet unmatched pairs. 8699 records in RAM. INFO 2026-06-04 21:56:44 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr12:122,232,408 INFO 2026-06-04 21:56:44 MarkDuplicates Tracking 446014 as yet unmatched pairs. 5792 records in RAM. INFO 2026-06-04 21:56:47 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 3s. Last read position: chr12:124,336,995 INFO 2026-06-04 21:56:47 MarkDuplicates Tracking 445019 as yet unmatched pairs. 4791 records in RAM. INFO 2026-06-04 21:56:50 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr12:131,797,298 INFO 2026-06-04 21:56:50 MarkDuplicates Tracking 442283 as yet unmatched pairs. 2053 records in RAM. INFO 2026-06-04 21:56:53 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 3s. Last read position: chr13:19,993,135 INFO 2026-06-04 21:56:53 MarkDuplicates Tracking 441339 as yet unmatched pairs. 18366 records in RAM. INFO 2026-06-04 21:56:56 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr13:23,336,503 INFO 2026-06-04 21:56:56 MarkDuplicates Tracking 438612 as yet unmatched pairs. 15637 records in RAM. INFO 2026-06-04 21:56:59 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 3s. Last read position: chr13:37,563,312 INFO 2026-06-04 21:56:59 MarkDuplicates Tracking 440110 as yet unmatched pairs. 17128 records in RAM. INFO 2026-06-04 21:57:02 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr13:45,337,256 INFO 2026-06-04 21:57:02 MarkDuplicates Tracking 436269 as yet unmatched pairs. 13282 records in RAM. INFO 2026-06-04 21:57:05 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 3s. Last read position: chr13:59,810,899 INFO 2026-06-04 21:57:05 MarkDuplicates Tracking 433031 as yet unmatched pairs. 10035 records in RAM. INFO 2026-06-04 21:57:08 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr13:97,992,989 INFO 2026-06-04 21:57:08 MarkDuplicates Tracking 431382 as yet unmatched pairs. 8374 records in RAM. INFO 2026-06-04 21:57:11 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 3s. Last read position: chr13:110,161,274 INFO 2026-06-04 21:57:11 MarkDuplicates Tracking 430731 as yet unmatched pairs. 7711 records in RAM. INFO 2026-06-04 21:57:14 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr13:110,424,735 INFO 2026-06-04 21:57:14 MarkDuplicates Tracking 427609 as yet unmatched pairs. 4580 records in RAM. INFO 2026-06-04 21:57:16 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr13:111,205,362 INFO 2026-06-04 21:57:16 MarkDuplicates Tracking 424963 as yet unmatched pairs. 1921 records in RAM. INFO 2026-06-04 21:57:19 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 3s. Last read position: chr14:20,801,576 INFO 2026-06-04 21:57:19 MarkDuplicates Tracking 423552 as yet unmatched pairs. 37887 records in RAM. INFO 2026-06-04 21:57:22 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr14:22,843,354 INFO 2026-06-04 21:57:22 MarkDuplicates Tracking 422946 as yet unmatched pairs. 37280 records in RAM. INFO 2026-06-04 21:57:24 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr14:24,005,886 INFO 2026-06-04 21:57:24 MarkDuplicates Tracking 419023 as yet unmatched pairs. 33350 records in RAM. INFO 2026-06-04 21:57:27 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr14:31,128,691 INFO 2026-06-04 21:57:27 MarkDuplicates Tracking 417079 as yet unmatched pairs. 31400 records in RAM. INFO 2026-06-04 21:57:30 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 3s. Last read position: chr14:39,150,248 INFO 2026-06-04 21:57:30 MarkDuplicates Tracking 415246 as yet unmatched pairs. 29565 records in RAM. INFO 2026-06-04 21:57:32 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr14:51,715,399 INFO 2026-06-04 21:57:32 MarkDuplicates Tracking 413548 as yet unmatched pairs. 27845 records in RAM. INFO 2026-06-04 21:57:35 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 3s. Last read position: chr14:55,667,256 INFO 2026-06-04 21:57:35 MarkDuplicates Tracking 412989 as yet unmatched pairs. 27282 records in RAM. INFO 2026-06-04 21:57:37 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr14:63,422,034 INFO 2026-06-04 21:57:37 MarkDuplicates Tracking 410313 as yet unmatched pairs. 24604 records in RAM. INFO 2026-06-04 21:57:41 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 3s. Last read position: chr14:67,772,120 INFO 2026-06-04 21:57:41 MarkDuplicates Tracking 407598 as yet unmatched pairs. 21886 records in RAM. INFO 2026-06-04 21:57:43 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr14:69,442,202 INFO 2026-06-04 21:57:43 MarkDuplicates Tracking 405794 as yet unmatched pairs. 20079 records in RAM. INFO 2026-06-04 21:57:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 3s. Last read position: chr14:74,486,394 INFO 2026-06-04 21:57:46 MarkDuplicates Tracking 404279 as yet unmatched pairs. 18553 records in RAM. INFO 2026-06-04 21:57:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr14:75,906,605 INFO 2026-06-04 21:57:48 MarkDuplicates Tracking 401834 as yet unmatched pairs. 16105 records in RAM. INFO 2026-06-04 21:57:52 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 3s. Last read position: chr14:91,273,074 INFO 2026-06-04 21:57:52 MarkDuplicates Tracking 399973 as yet unmatched pairs. 14240 records in RAM. INFO 2026-06-04 21:57:55 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr14:95,103,683 INFO 2026-06-04 21:57:55 MarkDuplicates Tracking 398158 as yet unmatched pairs. 12420 records in RAM. INFO 2026-06-04 21:57:58 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 3s. Last read position: chr14:102,017,156 INFO 2026-06-04 21:57:58 MarkDuplicates Tracking 397141 as yet unmatched pairs. 11391 records in RAM. INFO 2026-06-04 21:58:01 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr14:103,559,858 INFO 2026-06-04 21:58:01 MarkDuplicates Tracking 394433 as yet unmatched pairs. 8680 records in RAM. INFO 2026-06-04 21:58:04 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr14:104,941,418 INFO 2026-06-04 21:58:04 MarkDuplicates Tracking 393164 as yet unmatched pairs. 7409 records in RAM. INFO 2026-06-04 21:58:06 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr14:104,946,014 INFO 2026-06-04 21:58:06 MarkDuplicates Tracking 397079 as yet unmatched pairs. 11320 records in RAM. INFO 2026-06-04 21:58:08 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr14:104,951,102 INFO 2026-06-04 21:58:08 MarkDuplicates Tracking 392650 as yet unmatched pairs. 6887 records in RAM. INFO 2026-06-04 21:58:11 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr14:105,479,582 INFO 2026-06-04 21:58:11 MarkDuplicates Tracking 387639 as yet unmatched pairs. 1872 records in RAM. INFO 2026-06-04 21:58:14 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 3s. Last read position: chr15:22,914,812 INFO 2026-06-04 21:58:14 MarkDuplicates Tracking 385992 as yet unmatched pairs. 25059 records in RAM. INFO 2026-06-04 21:58:16 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr15:39,581,183 INFO 2026-06-04 21:58:16 MarkDuplicates Tracking 387669 as yet unmatched pairs. 26728 records in RAM. INFO 2026-06-04 21:58:19 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr15:39,591,190 INFO 2026-06-04 21:58:19 MarkDuplicates Tracking 382966 as yet unmatched pairs. 22025 records in RAM. INFO 2026-06-04 21:58:21 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr15:41,522,176 INFO 2026-06-04 21:58:21 MarkDuplicates Tracking 380036 as yet unmatched pairs. 19091 records in RAM. INFO 2026-06-04 21:58:24 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr15:43,792,985 INFO 2026-06-04 21:58:24 MarkDuplicates Tracking 384407 as yet unmatched pairs. 23462 records in RAM. INFO 2026-06-04 21:58:26 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr15:50,481,986 INFO 2026-06-04 21:58:26 MarkDuplicates Tracking 376327 as yet unmatched pairs. 15378 records in RAM. INFO 2026-06-04 21:58:29 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr15:59,224,749 INFO 2026-06-04 21:58:29 MarkDuplicates Tracking 374502 as yet unmatched pairs. 13545 records in RAM. INFO 2026-06-04 21:58:31 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr15:64,160,126 INFO 2026-06-04 21:58:31 MarkDuplicates Tracking 375595 as yet unmatched pairs. 14633 records in RAM. INFO 2026-06-04 21:58:34 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr15:71,165,117 INFO 2026-06-04 21:58:34 MarkDuplicates Tracking 370544 as yet unmatched pairs. 9571 records in RAM. INFO 2026-06-04 21:58:36 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr15:74,035,631 INFO 2026-06-04 21:58:36 MarkDuplicates Tracking 369219 as yet unmatched pairs. 8244 records in RAM. INFO 2026-06-04 21:58:39 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 3s. Last read position: chr15:77,986,580 INFO 2026-06-04 21:58:39 MarkDuplicates Tracking 366378 as yet unmatched pairs. 5398 records in RAM. INFO 2026-06-04 21:58:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr15:85,579,912 INFO 2026-06-04 21:58:41 MarkDuplicates Tracking 364812 as yet unmatched pairs. 3824 records in RAM. INFO 2026-06-04 21:58:45 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 3s. Last read position: chr15:90,486,030 INFO 2026-06-04 21:58:45 MarkDuplicates Tracking 363113 as yet unmatched pairs. 2114 records in RAM. INFO 2026-06-04 21:58:49 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 4s. Last read position: chr16:88,733 INFO 2026-06-04 21:58:49 MarkDuplicates Tracking 361044 as yet unmatched pairs. 50041 records in RAM. INFO 2026-06-04 21:58:52 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr16:1,351,429 INFO 2026-06-04 21:58:52 MarkDuplicates Tracking 358826 as yet unmatched pairs. 47821 records in RAM. INFO 2026-06-04 21:58:55 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 3s. Last read position: chr16:2,103,528 INFO 2026-06-04 21:58:55 MarkDuplicates Tracking 356359 as yet unmatched pairs. 45351 records in RAM. INFO 2026-06-04 21:58:57 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr16:2,766,381 INFO 2026-06-04 21:58:57 MarkDuplicates Tracking 355047 as yet unmatched pairs. 44033 records in RAM. INFO 2026-06-04 21:59:01 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 3s. Last read position: chr16:3,745,302 INFO 2026-06-04 21:59:01 MarkDuplicates Tracking 352214 as yet unmatched pairs. 41199 records in RAM. INFO 2026-06-04 21:59:03 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr16:11,123,858 INFO 2026-06-04 21:59:03 MarkDuplicates Tracking 350193 as yet unmatched pairs. 39171 records in RAM. INFO 2026-06-04 21:59:05 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:14,926,707 INFO 2026-06-04 21:59:05 MarkDuplicates Tracking 348514 as yet unmatched pairs. 37489 records in RAM. INFO 2026-06-04 21:59:08 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr16:16,321,023 INFO 2026-06-04 21:59:08 MarkDuplicates Tracking 347331 as yet unmatched pairs. 36306 records in RAM. INFO 2026-06-04 21:59:10 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,055 INFO 2026-06-04 21:59:10 MarkDuplicates Tracking 349673 as yet unmatched pairs. 38648 records in RAM. INFO 2026-06-04 21:59:12 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr16:21,599,759 INFO 2026-06-04 21:59:12 MarkDuplicates Tracking 345768 as yet unmatched pairs. 34742 records in RAM. INFO 2026-06-04 21:59:14 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,015 INFO 2026-06-04 21:59:14 MarkDuplicates Tracking 344388 as yet unmatched pairs. 33362 records in RAM. INFO 2026-06-04 21:59:17 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr16:28,491,723 INFO 2026-06-04 21:59:17 MarkDuplicates Tracking 342544 as yet unmatched pairs. 31512 records in RAM. INFO 2026-06-04 21:59:19 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr16:29,500,105 INFO 2026-06-04 21:59:19 MarkDuplicates Tracking 341796 as yet unmatched pairs. 30763 records in RAM. INFO 2026-06-04 21:59:22 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr16:30,070,014 INFO 2026-06-04 21:59:22 MarkDuplicates Tracking 341640 as yet unmatched pairs. 30600 records in RAM. INFO 2026-06-04 21:59:24 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr16:30,720,919 INFO 2026-06-04 21:59:24 MarkDuplicates Tracking 338010 as yet unmatched pairs. 26969 records in RAM. INFO 2026-06-04 21:59:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr16:31,189,782 INFO 2026-06-04 21:59:27 MarkDuplicates Tracking 336232 as yet unmatched pairs. 25189 records in RAM. INFO 2026-06-04 21:59:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr16:50,293,249 INFO 2026-06-04 21:59:29 MarkDuplicates Tracking 333852 as yet unmatched pairs. 22808 records in RAM. INFO 2026-06-04 21:59:32 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:56,474,873 INFO 2026-06-04 21:59:32 MarkDuplicates Tracking 332169 as yet unmatched pairs. 21114 records in RAM. INFO 2026-06-04 21:59:35 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:56,609,301 INFO 2026-06-04 21:59:35 MarkDuplicates Tracking 334388 as yet unmatched pairs. 23330 records in RAM. INFO 2026-06-04 21:59:38 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 3s. Last read position: chr16:57,661,839 INFO 2026-06-04 21:59:38 MarkDuplicates Tracking 327721 as yet unmatched pairs. 16661 records in RAM. INFO 2026-06-04 21:59:40 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:67,199,994 INFO 2026-06-04 21:59:40 MarkDuplicates Tracking 325252 as yet unmatched pairs. 14190 records in RAM. INFO 2026-06-04 21:59:44 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 3s. Last read position: chr16:68,679,903 INFO 2026-06-04 21:59:44 MarkDuplicates Tracking 326713 as yet unmatched pairs. 15645 records in RAM. INFO 2026-06-04 21:59:47 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 3s. Last read position: chr16:70,251,075 INFO 2026-06-04 21:59:47 MarkDuplicates Tracking 321747 as yet unmatched pairs. 10678 records in RAM. INFO 2026-06-04 21:59:51 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 4s. Last read position: chr16:74,470,004 INFO 2026-06-04 21:59:51 MarkDuplicates Tracking 320414 as yet unmatched pairs. 9337 records in RAM. INFO 2026-06-04 21:59:54 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr16:83,808,057 INFO 2026-06-04 21:59:54 MarkDuplicates Tracking 319709 as yet unmatched pairs. 8623 records in RAM. INFO 2026-06-04 21:59:57 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 3s. Last read position: chr16:87,841,090 INFO 2026-06-04 21:59:57 MarkDuplicates Tracking 317504 as yet unmatched pairs. 6410 records in RAM. INFO 2026-06-04 22:00:00 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr16:88,807,333 INFO 2026-06-04 22:00:00 MarkDuplicates Tracking 313340 as yet unmatched pairs. 2241 records in RAM. INFO 2026-06-04 22:00:04 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 4s. Last read position: chr16:89,954,312 INFO 2026-06-04 22:00:04 MarkDuplicates Tracking 312013 as yet unmatched pairs. 912 records in RAM. INFO 2026-06-04 22:00:08 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 4s. Last read position: chr17:1,725,079 INFO 2026-06-04 22:00:08 MarkDuplicates Tracking 309609 as yet unmatched pairs. 114799 records in RAM. INFO 2026-06-04 22:00:12 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 3s. Last read position: chr17:4,884,447 INFO 2026-06-04 22:00:12 MarkDuplicates Tracking 307588 as yet unmatched pairs. 112775 records in RAM. INFO 2026-06-04 22:00:15 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 3s. Last read position: chr17:7,244,110 INFO 2026-06-04 22:00:15 MarkDuplicates Tracking 305625 as yet unmatched pairs. 110811 records in RAM. INFO 2026-06-04 22:00:18 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 3s. Last read position: chr17:7,578,355 INFO 2026-06-04 22:00:18 MarkDuplicates Tracking 303667 as yet unmatched pairs. 108852 records in RAM. INFO 2026-06-04 22:00:22 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 3s. Last read position: chr17:8,174,193 INFO 2026-06-04 22:00:22 MarkDuplicates Tracking 301621 as yet unmatched pairs. 106805 records in RAM. INFO 2026-06-04 22:00:24 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,491 INFO 2026-06-04 22:00:24 MarkDuplicates Tracking 303745 as yet unmatched pairs. 108925 records in RAM. INFO 2026-06-04 22:00:28 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 3s. Last read position: chr17:18,254,182 INFO 2026-06-04 22:00:28 MarkDuplicates Tracking 298667 as yet unmatched pairs. 103847 records in RAM. INFO 2026-06-04 22:00:30 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr17:27,642,306 INFO 2026-06-04 22:00:30 MarkDuplicates Tracking 296936 as yet unmatched pairs. 102113 records in RAM. INFO 2026-06-04 22:00:34 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 3s. Last read position: chr17:29,118,117 INFO 2026-06-04 22:00:34 MarkDuplicates Tracking 294632 as yet unmatched pairs. 99803 records in RAM. INFO 2026-06-04 22:00:37 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 2s. Last read position: chr17:31,940,461 INFO 2026-06-04 22:00:37 MarkDuplicates Tracking 293224 as yet unmatched pairs. 98392 records in RAM. INFO 2026-06-04 22:00:40 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 3s. Last read position: chr17:36,071,071 INFO 2026-06-04 22:00:40 MarkDuplicates Tracking 293219 as yet unmatched pairs. 98384 records in RAM. INFO 2026-06-04 22:00:43 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr17:38,850,451 INFO 2026-06-04 22:00:43 MarkDuplicates Tracking 293956 as yet unmatched pairs. 99121 records in RAM. INFO 2026-06-04 22:00:48 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 5s. Last read position: chr17:40,126,247 INFO 2026-06-04 22:00:48 MarkDuplicates Tracking 286742 as yet unmatched pairs. 91906 records in RAM. INFO 2026-06-04 22:00:51 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 3s. Last read position: chr17:41,516,823 INFO 2026-06-04 22:00:51 MarkDuplicates Tracking 296322 as yet unmatched pairs. 101485 records in RAM. INFO 2026-06-04 22:00:56 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 4s. Last read position: chr17:41,583,658 INFO 2026-06-04 22:00:56 MarkDuplicates Tracking 293859 as yet unmatched pairs. 99019 records in RAM. INFO 2026-06-04 22:00:58 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:41,612,240 INFO 2026-06-04 22:00:58 MarkDuplicates Tracking 283698 as yet unmatched pairs. 88855 records in RAM. INFO 2026-06-04 22:01:02 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 3s. Last read position: chr17:41,622,433 INFO 2026-06-04 22:01:02 MarkDuplicates Tracking 288693 as yet unmatched pairs. 93849 records in RAM. INFO 2026-06-04 22:01:04 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr17:41,819,530 INFO 2026-06-04 22:01:04 MarkDuplicates Tracking 276490 as yet unmatched pairs. 81645 records in RAM. INFO 2026-06-04 22:01:08 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 3s. Last read position: chr17:42,712,288 INFO 2026-06-04 22:01:08 MarkDuplicates Tracking 274155 as yet unmatched pairs. 79310 records in RAM. INFO 2026-06-04 22:01:10 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr17:44,351,665 INFO 2026-06-04 22:01:10 MarkDuplicates Tracking 273587 as yet unmatched pairs. 78741 records in RAM. INFO 2026-06-04 22:04:30 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 199s. Last read position: chr17:47,697,131 INFO 2026-06-04 22:04:30 MarkDuplicates Tracking 270278 as yet unmatched pairs. 75432 records in RAM. INFO 2026-06-04 22:04:33 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,077,020 INFO 2026-06-04 22:04:33 MarkDuplicates Tracking 270582 as yet unmatched pairs. 75733 records in RAM. INFO 2026-06-04 22:04:36 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 3s. Last read position: chr17:50,185,778 INFO 2026-06-04 22:04:36 MarkDuplicates Tracking 278903 as yet unmatched pairs. 84050 records in RAM. INFO 2026-06-04 22:04:38 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,490 INFO 2026-06-04 22:04:38 MarkDuplicates Tracking 280438 as yet unmatched pairs. 85585 records in RAM. INFO 2026-06-04 22:04:41 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 3s. Last read position: chr17:50,187,014 INFO 2026-06-04 22:04:41 MarkDuplicates Tracking 323219 as yet unmatched pairs. 128364 records in RAM. INFO 2026-06-04 22:04:44 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,878 INFO 2026-06-04 22:04:44 MarkDuplicates Tracking 328274 as yet unmatched pairs. 133419 records in RAM. INFO 2026-06-04 22:04:47 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,107 INFO 2026-06-04 22:04:47 MarkDuplicates Tracking 353215 as yet unmatched pairs. 158358 records in RAM. INFO 2026-06-04 22:04:50 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,908 INFO 2026-06-04 22:04:50 MarkDuplicates Tracking 322467 as yet unmatched pairs. 127609 records in RAM. INFO 2026-06-04 22:04:53 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,398 INFO 2026-06-04 22:04:53 MarkDuplicates Tracking 293239 as yet unmatched pairs. 98381 records in RAM. INFO 2026-06-04 22:04:55 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,675 INFO 2026-06-04 22:04:55 MarkDuplicates Tracking 351383 as yet unmatched pairs. 156522 records in RAM. INFO 2026-06-04 22:04:58 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 3s. Last read position: chr17:50,190,056 INFO 2026-06-04 22:04:58 MarkDuplicates Tracking 349727 as yet unmatched pairs. 154866 records in RAM. INFO 2026-06-04 22:05:01 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,883 INFO 2026-06-04 22:05:01 MarkDuplicates Tracking 285011 as yet unmatched pairs. 90144 records in RAM. INFO 2026-06-04 22:05:04 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 3s. Last read position: chr17:50,191,954 INFO 2026-06-04 22:05:04 MarkDuplicates Tracking 307119 as yet unmatched pairs. 112250 records in RAM. INFO 2026-06-04 22:05:07 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,832 INFO 2026-06-04 22:05:07 MarkDuplicates Tracking 310976 as yet unmatched pairs. 116105 records in RAM. INFO 2026-06-04 22:05:10 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 3s. Last read position: chr17:50,193,997 INFO 2026-06-04 22:05:10 MarkDuplicates Tracking 311155 as yet unmatched pairs. 116284 records in RAM. INFO 2026-06-04 22:05:13 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,376 INFO 2026-06-04 22:05:13 MarkDuplicates Tracking 322153 as yet unmatched pairs. 127282 records in RAM. INFO 2026-06-04 22:05:16 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,755 INFO 2026-06-04 22:05:16 MarkDuplicates Tracking 309986 as yet unmatched pairs. 115115 records in RAM. INFO 2026-06-04 22:05:19 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,301 INFO 2026-06-04 22:05:19 MarkDuplicates Tracking 295834 as yet unmatched pairs. 100962 records in RAM. INFO 2026-06-04 22:05:22 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 3s. Last read position: chr17:50,195,927 INFO 2026-06-04 22:05:22 MarkDuplicates Tracking 277851 as yet unmatched pairs. 82977 records in RAM. INFO 2026-06-04 22:05:25 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,313 INFO 2026-06-04 22:05:25 MarkDuplicates Tracking 347189 as yet unmatched pairs. 152314 records in RAM. INFO 2026-06-04 22:05:29 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 3s. Last read position: chr17:50,196,659 INFO 2026-06-04 22:05:29 MarkDuplicates Tracking 335500 as yet unmatched pairs. 140617 records in RAM. INFO 2026-06-04 22:05:32 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 3s. Last read position: chr17:50,197,755 INFO 2026-06-04 22:05:32 MarkDuplicates Tracking 301086 as yet unmatched pairs. 106201 records in RAM. INFO 2026-06-04 22:05:35 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,259 INFO 2026-06-04 22:05:35 MarkDuplicates Tracking 254895 as yet unmatched pairs. 60008 records in RAM. INFO 2026-06-04 22:05:38 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,781 INFO 2026-06-04 22:05:38 MarkDuplicates Tracking 243838 as yet unmatched pairs. 48949 records in RAM. INFO 2026-06-04 22:05:41 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 3s. Last read position: chr17:50,555,533 INFO 2026-06-04 22:05:41 MarkDuplicates Tracking 221684 as yet unmatched pairs. 26795 records in RAM. INFO 2026-06-04 22:05:44 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr17:59,647,449 INFO 2026-06-04 22:05:44 MarkDuplicates Tracking 224224 as yet unmatched pairs. 29330 records in RAM. INFO 2026-06-04 22:05:47 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr17:59,735,359 INFO 2026-06-04 22:05:47 MarkDuplicates Tracking 218157 as yet unmatched pairs. 23261 records in RAM. INFO 2026-06-04 22:05:50 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 3s. Last read position: chr17:63,792,505 INFO 2026-06-04 22:05:50 MarkDuplicates Tracking 216470 as yet unmatched pairs. 21569 records in RAM. INFO 2026-06-04 22:05:53 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 3s. Last read position: chr17:67,991,971 INFO 2026-06-04 22:05:53 MarkDuplicates Tracking 214014 as yet unmatched pairs. 19109 records in RAM. INFO 2026-06-04 22:05:56 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 3s. Last read position: chr17:74,209,236 INFO 2026-06-04 22:05:56 MarkDuplicates Tracking 212039 as yet unmatched pairs. 17130 records in RAM. INFO 2026-06-04 22:05:59 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr17:75,731,349 INFO 2026-06-04 22:05:59 MarkDuplicates Tracking 211021 as yet unmatched pairs. 16109 records in RAM. INFO 2026-06-04 22:06:02 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr17:75,778,672 INFO 2026-06-04 22:06:02 MarkDuplicates Tracking 220149 as yet unmatched pairs. 25234 records in RAM. INFO 2026-06-04 22:06:04 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr17:76,736,799 INFO 2026-06-04 22:06:04 MarkDuplicates Tracking 206538 as yet unmatched pairs. 11621 records in RAM. INFO 2026-06-04 22:06:08 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 3s. Last read position: chr17:78,873,877 INFO 2026-06-04 22:06:08 MarkDuplicates Tracking 204292 as yet unmatched pairs. 9374 records in RAM. INFO 2026-06-04 22:06:10 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr17:80,380,937 INFO 2026-06-04 22:06:10 MarkDuplicates Tracking 201663 as yet unmatched pairs. 6744 records in RAM. INFO 2026-06-04 22:06:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 5s. Last read position: chr17:81,672,091 INFO 2026-06-04 22:06:16 MarkDuplicates Tracking 199538 as yet unmatched pairs. 4619 records in RAM. INFO 2026-06-04 22:06:18 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr17:81,923,166 INFO 2026-06-04 22:06:18 MarkDuplicates Tracking 197371 as yet unmatched pairs. 2451 records in RAM. INFO 2026-06-04 22:06:22 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 3s. Last read position: chr17:82,926,454 INFO 2026-06-04 22:06:22 MarkDuplicates Tracking 195274 as yet unmatched pairs. 350 records in RAM. INFO 2026-06-04 22:06:24 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr18:7,023,208 INFO 2026-06-04 22:06:24 MarkDuplicates Tracking 193870 as yet unmatched pairs. 13597 records in RAM. INFO 2026-06-04 22:06:27 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 3s. Last read position: chr18:12,325,287 INFO 2026-06-04 22:06:27 MarkDuplicates Tracking 196260 as yet unmatched pairs. 15986 records in RAM. INFO 2026-06-04 22:06:30 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr18:23,873,065 INFO 2026-06-04 22:06:30 MarkDuplicates Tracking 193556 as yet unmatched pairs. 13274 records in RAM. INFO 2026-06-04 22:06:33 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 3s. Last read position: chr18:23,931,097 INFO 2026-06-04 22:06:33 MarkDuplicates Tracking 188197 as yet unmatched pairs. 7915 records in RAM. INFO 2026-06-04 22:06:35 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chr18:31,022,367 INFO 2026-06-04 22:06:35 MarkDuplicates Tracking 185486 as yet unmatched pairs. 5202 records in RAM. INFO 2026-06-04 22:06:39 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 3s. Last read position: chr18:41,995,895 INFO 2026-06-04 22:06:39 MarkDuplicates Tracking 183650 as yet unmatched pairs. 3364 records in RAM. INFO 2026-06-04 22:06:41 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr18:62,187,420 INFO 2026-06-04 22:06:41 MarkDuplicates Tracking 181764 as yet unmatched pairs. 1474 records in RAM. INFO 2026-06-04 22:06:45 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 4s. Last read position: chr19:581,348 INFO 2026-06-04 22:06:45 MarkDuplicates Tracking 181124 as yet unmatched pairs. 75813 records in RAM. INFO 2026-06-04 22:06:48 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:1,043,730 INFO 2026-06-04 22:06:48 MarkDuplicates Tracking 177483 as yet unmatched pairs. 72170 records in RAM. INFO 2026-06-04 22:06:51 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 3s. Last read position: chr19:1,440,108 INFO 2026-06-04 22:06:51 MarkDuplicates Tracking 182450 as yet unmatched pairs. 77135 records in RAM. INFO 2026-06-04 22:06:53 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr19:2,114,259 INFO 2026-06-04 22:06:53 MarkDuplicates Tracking 173172 as yet unmatched pairs. 67853 records in RAM. INFO 2026-06-04 22:06:56 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 3s. Last read position: chr19:3,366,647 INFO 2026-06-04 22:06:56 MarkDuplicates Tracking 170828 as yet unmatched pairs. 65508 records in RAM. INFO 2026-06-04 22:06:59 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr19:4,516,667 INFO 2026-06-04 22:06:59 MarkDuplicates Tracking 168564 as yet unmatched pairs. 63244 records in RAM. INFO 2026-06-04 22:07:02 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr19:5,789,642 INFO 2026-06-04 22:07:02 MarkDuplicates Tracking 166445 as yet unmatched pairs. 61125 records in RAM. INFO 2026-06-04 22:07:04 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr19:7,533,598 INFO 2026-06-04 22:07:04 MarkDuplicates Tracking 164320 as yet unmatched pairs. 59000 records in RAM. INFO 2026-06-04 22:07:07 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 3s. Last read position: chr19:8,403,487 INFO 2026-06-04 22:07:07 MarkDuplicates Tracking 162206 as yet unmatched pairs. 56885 records in RAM. INFO 2026-06-04 22:07:10 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 2s. Last read position: chr19:10,284,610 INFO 2026-06-04 22:07:10 MarkDuplicates Tracking 160655 as yet unmatched pairs. 55334 records in RAM. INFO 2026-06-04 22:07:13 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 3s. Last read position: chr19:11,023,608 INFO 2026-06-04 22:07:13 MarkDuplicates Tracking 157959 as yet unmatched pairs. 52638 records in RAM. INFO 2026-06-04 22:07:15 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr19:12,675,815 INFO 2026-06-04 22:07:15 MarkDuplicates Tracking 156749 as yet unmatched pairs. 51428 records in RAM. INFO 2026-06-04 22:07:18 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr19:13,116,193 INFO 2026-06-04 22:07:18 MarkDuplicates Tracking 153930 as yet unmatched pairs. 48608 records in RAM. INFO 2026-06-04 22:07:21 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 2s. Last read position: chr19:14,480,677 INFO 2026-06-04 22:07:21 MarkDuplicates Tracking 152530 as yet unmatched pairs. 47208 records in RAM. INFO 2026-06-04 22:07:24 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 3s. Last read position: chr19:15,160,965 INFO 2026-06-04 22:07:24 MarkDuplicates Tracking 150086 as yet unmatched pairs. 44757 records in RAM. INFO 2026-06-04 22:07:26 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chr19:15,272,916 INFO 2026-06-04 22:07:26 MarkDuplicates Tracking 149248 as yet unmatched pairs. 43917 records in RAM. INFO 2026-06-04 22:07:29 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 2s. Last read position: chr19:17,197,818 INFO 2026-06-04 22:07:29 MarkDuplicates Tracking 146313 as yet unmatched pairs. 40982 records in RAM. INFO 2026-06-04 22:07:32 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr19:17,942,732 INFO 2026-06-04 22:07:32 MarkDuplicates Tracking 144104 as yet unmatched pairs. 38772 records in RAM. INFO 2026-06-04 22:07:34 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 2s. Last read position: chr19:18,575,085 INFO 2026-06-04 22:07:34 MarkDuplicates Tracking 142048 as yet unmatched pairs. 36714 records in RAM. INFO 2026-06-04 22:07:37 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr19:19,630,270 INFO 2026-06-04 22:07:37 MarkDuplicates Tracking 139303 as yet unmatched pairs. 33969 records in RAM. INFO 2026-06-04 22:07:40 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 3s. Last read position: chr19:35,023,514 INFO 2026-06-04 22:07:40 MarkDuplicates Tracking 137526 as yet unmatched pairs. 32191 records in RAM. INFO 2026-06-04 22:07:43 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 2s. Last read position: chr19:35,746,509 INFO 2026-06-04 22:07:43 MarkDuplicates Tracking 135741 as yet unmatched pairs. 30406 records in RAM. INFO 2026-06-04 22:07:46 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 3s. Last read position: chr19:38,624,129 INFO 2026-06-04 22:07:46 MarkDuplicates Tracking 134039 as yet unmatched pairs. 28703 records in RAM. INFO 2026-06-04 22:07:48 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr19:39,407,884 INFO 2026-06-04 22:07:48 MarkDuplicates Tracking 134074 as yet unmatched pairs. 28737 records in RAM. INFO 2026-06-04 22:07:51 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr19:40,238,914 INFO 2026-06-04 22:07:51 MarkDuplicates Tracking 130280 as yet unmatched pairs. 24943 records in RAM. INFO 2026-06-04 22:07:53 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr19:41,302,935 INFO 2026-06-04 22:07:53 MarkDuplicates Tracking 128035 as yet unmatched pairs. 22696 records in RAM. INFO 2026-06-04 22:07:57 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 3s. Last read position: chr19:42,273,735 INFO 2026-06-04 22:07:57 MarkDuplicates Tracking 126039 as yet unmatched pairs. 20700 records in RAM. INFO 2026-06-04 22:07:59 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chr19:44,477,043 INFO 2026-06-04 22:07:59 MarkDuplicates Tracking 123103 as yet unmatched pairs. 17761 records in RAM. INFO 2026-06-04 22:08:02 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 3s. Last read position: chr19:45,472,904 INFO 2026-06-04 22:08:02 MarkDuplicates Tracking 121350 as yet unmatched pairs. 16008 records in RAM. INFO 2026-06-04 22:08:05 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr19:47,169,859 INFO 2026-06-04 22:08:05 MarkDuplicates Tracking 119171 as yet unmatched pairs. 13825 records in RAM. INFO 2026-06-04 22:08:08 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 3s. Last read position: chr19:48,873,424 INFO 2026-06-04 22:08:08 MarkDuplicates Tracking 118292 as yet unmatched pairs. 12946 records in RAM. INFO 2026-06-04 22:08:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr19:49,490,249 INFO 2026-06-04 22:08:10 MarkDuplicates Tracking 121580 as yet unmatched pairs. 16232 records in RAM. INFO 2026-06-04 22:08:13 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 3s. Last read position: chr19:49,854,980 INFO 2026-06-04 22:08:13 MarkDuplicates Tracking 113198 as yet unmatched pairs. 7848 records in RAM. INFO 2026-06-04 22:08:15 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 2s. Last read position: chr19:53,069,328 INFO 2026-06-04 22:08:15 MarkDuplicates Tracking 110739 as yet unmatched pairs. 5389 records in RAM. INFO 2026-06-04 22:08:18 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 2s. Last read position: chr19:55,091,889 INFO 2026-06-04 22:08:18 MarkDuplicates Tracking 108979 as yet unmatched pairs. 3629 records in RAM. INFO 2026-06-04 22:08:21 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chr19:57,435,485 INFO 2026-06-04 22:08:21 MarkDuplicates Tracking 106678 as yet unmatched pairs. 1327 records in RAM. INFO 2026-06-04 22:08:24 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 3s. Last read position: chr20:1,392,833 INFO 2026-06-04 22:08:24 MarkDuplicates Tracking 107323 as yet unmatched pairs. 29509 records in RAM. INFO 2026-06-04 22:08:26 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr20:4,699,370 INFO 2026-06-04 22:08:26 MarkDuplicates Tracking 105761 as yet unmatched pairs. 27945 records in RAM. INFO 2026-06-04 22:08:29 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chr20:17,600,950 INFO 2026-06-04 22:08:29 MarkDuplicates Tracking 102455 as yet unmatched pairs. 24639 records in RAM. INFO 2026-06-04 22:08:32 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr20:23,085,275 INFO 2026-06-04 22:08:32 MarkDuplicates Tracking 99748 as yet unmatched pairs. 21932 records in RAM. INFO 2026-06-04 22:08:35 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 3s. Last read position: chr20:33,640,379 INFO 2026-06-04 22:08:35 MarkDuplicates Tracking 96641 as yet unmatched pairs. 18824 records in RAM. INFO 2026-06-04 22:08:38 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 3s. Last read position: chr20:35,704,405 INFO 2026-06-04 22:08:38 MarkDuplicates Tracking 95212 as yet unmatched pairs. 17393 records in RAM. INFO 2026-06-04 22:08:42 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 3s. Last read position: chr20:38,521,546 INFO 2026-06-04 22:08:42 MarkDuplicates Tracking 93005 as yet unmatched pairs. 15181 records in RAM. INFO 2026-06-04 22:08:44 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chr20:45,327,375 INFO 2026-06-04 22:08:44 MarkDuplicates Tracking 103584 as yet unmatched pairs. 25759 records in RAM. INFO 2026-06-04 22:08:48 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 3s. Last read position: chr20:45,907,887 INFO 2026-06-04 22:08:48 MarkDuplicates Tracking 95203 as yet unmatched pairs. 17376 records in RAM. INFO 2026-06-04 22:08:50 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 2s. Last read position: chr20:49,224,978 INFO 2026-06-04 22:08:50 MarkDuplicates Tracking 87148 as yet unmatched pairs. 9321 records in RAM. INFO 2026-06-04 22:08:53 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 2s. Last read position: chr20:56,399,240 INFO 2026-06-04 22:08:53 MarkDuplicates Tracking 84980 as yet unmatched pairs. 7152 records in RAM. INFO 2026-06-04 22:08:55 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 2s. Last read position: chr20:59,006,415 INFO 2026-06-04 22:08:55 MarkDuplicates Tracking 85363 as yet unmatched pairs. 7534 records in RAM. INFO 2026-06-04 22:08:58 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chr20:62,813,420 INFO 2026-06-04 22:08:58 MarkDuplicates Tracking 80882 as yet unmatched pairs. 3052 records in RAM. INFO 2026-06-04 22:09:01 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr20:63,889,983 INFO 2026-06-04 22:09:01 MarkDuplicates Tracking 78669 as yet unmatched pairs. 839 records in RAM. INFO 2026-06-04 22:09:03 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chr21:8,258,910 INFO 2026-06-04 22:09:03 MarkDuplicates Tracking 77084 as yet unmatched pairs. 15400 records in RAM. INFO 2026-06-04 22:09:05 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 1s. Last read position: chr21:17,565,611 INFO 2026-06-04 22:09:05 MarkDuplicates Tracking 76421 as yet unmatched pairs. 14733 records in RAM. INFO 2026-06-04 22:09:08 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chr21:29,006,533 INFO 2026-06-04 22:09:08 MarkDuplicates Tracking 74170 as yet unmatched pairs. 12479 records in RAM. INFO 2026-06-04 22:09:10 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chr21:33,903,987 INFO 2026-06-04 22:09:10 MarkDuplicates Tracking 72462 as yet unmatched pairs. 10771 records in RAM. INFO 2026-06-04 22:09:13 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chr21:39,178,576 INFO 2026-06-04 22:09:13 MarkDuplicates Tracking 70607 as yet unmatched pairs. 8915 records in RAM. INFO 2026-06-04 22:09:16 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 2s. Last read position: chr21:43,971,384 INFO 2026-06-04 22:09:16 MarkDuplicates Tracking 68263 as yet unmatched pairs. 6568 records in RAM. INFO 2026-06-04 22:09:19 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 2s. Last read position: chr21:45,510,076 INFO 2026-06-04 22:09:19 MarkDuplicates Tracking 67728 as yet unmatched pairs. 6033 records in RAM. INFO 2026-06-04 22:09:21 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: chr21:46,112,221 INFO 2026-06-04 22:09:21 MarkDuplicates Tracking 65750 as yet unmatched pairs. 4055 records in RAM. INFO 2026-06-04 22:09:24 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 3s. Last read position: chr21:46,549,817 INFO 2026-06-04 22:09:24 MarkDuplicates Tracking 62172 as yet unmatched pairs. 476 records in RAM. INFO 2026-06-04 22:09:27 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 2s. Last read position: chr22:20,314,683 INFO 2026-06-04 22:09:27 MarkDuplicates Tracking 60380 as yet unmatched pairs. 29275 records in RAM. INFO 2026-06-04 22:09:30 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chr22:23,273,081 INFO 2026-06-04 22:09:30 MarkDuplicates Tracking 59852 as yet unmatched pairs. 28746 records in RAM. INFO 2026-06-04 22:09:32 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 2s. Last read position: chr22:26,488,058 INFO 2026-06-04 22:09:32 MarkDuplicates Tracking 55544 as yet unmatched pairs. 24438 records in RAM. INFO 2026-06-04 22:09:35 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 3s. Last read position: chr22:29,341,628 INFO 2026-06-04 22:09:35 MarkDuplicates Tracking 53692 as yet unmatched pairs. 22585 records in RAM. INFO 2026-06-04 22:09:37 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 2s. Last read position: chr22:31,488,648 INFO 2026-06-04 22:09:37 MarkDuplicates Tracking 51501 as yet unmatched pairs. 20394 records in RAM. INFO 2026-06-04 22:09:40 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 2s. Last read position: chr22:36,285,658 INFO 2026-06-04 22:09:40 MarkDuplicates Tracking 53205 as yet unmatched pairs. 22098 records in RAM. INFO 2026-06-04 22:09:43 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 2s. Last read position: chr22:36,320,219 INFO 2026-06-04 22:09:43 MarkDuplicates Tracking 48819 as yet unmatched pairs. 17712 records in RAM. INFO 2026-06-04 22:09:46 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 3s. Last read position: chr22:37,678,627 INFO 2026-06-04 22:09:46 MarkDuplicates Tracking 49350 as yet unmatched pairs. 18243 records in RAM. INFO 2026-06-04 22:09:48 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chr22:38,721,701 INFO 2026-06-04 22:09:48 MarkDuplicates Tracking 43626 as yet unmatched pairs. 12519 records in RAM. INFO 2026-06-04 22:09:52 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:25:00s. Time for last 1,000,000: 3s. Last read position: chr22:40,850,840 INFO 2026-06-04 22:09:52 MarkDuplicates Tracking 42630 as yet unmatched pairs. 11523 records in RAM. INFO 2026-06-04 22:09:55 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 3s. Last read position: chr22:42,214,348 INFO 2026-06-04 22:09:55 MarkDuplicates Tracking 39564 as yet unmatched pairs. 8456 records in RAM. INFO 2026-06-04 22:09:59 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:25:06s. Time for last 1,000,000: 3s. Last read position: chr22:45,931,157 INFO 2026-06-04 22:09:59 MarkDuplicates Tracking 37556 as yet unmatched pairs. 6447 records in RAM. INFO 2026-06-04 22:10:01 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:25:09s. Time for last 1,000,000: 2s. Last read position: chr22:50,198,156 INFO 2026-06-04 22:10:01 MarkDuplicates Tracking 35280 as yet unmatched pairs. 4171 records in RAM. INFO 2026-06-04 22:10:04 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 2s. Last read position: chr22:50,525,783 INFO 2026-06-04 22:10:04 MarkDuplicates Tracking 36301 as yet unmatched pairs. 5192 records in RAM. INFO 2026-06-04 22:10:07 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 2s. Last read position: chrX:3,311,571 INFO 2026-06-04 22:10:07 MarkDuplicates Tracking 30711 as yet unmatched pairs. 28927 records in RAM. INFO 2026-06-04 22:10:09 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:25:17s. Time for last 1,000,000: 2s. Last read position: chrX:18,893,558 INFO 2026-06-04 22:10:09 MarkDuplicates Tracking 28273 as yet unmatched pairs. 26485 records in RAM. INFO 2026-06-04 22:10:12 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 2s. Last read position: chrX:40,062,264 INFO 2026-06-04 22:10:12 MarkDuplicates Tracking 26486 as yet unmatched pairs. 24697 records in RAM. INFO 2026-06-04 22:10:15 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 2s. Last read position: chrX:47,180,473 INFO 2026-06-04 22:10:15 MarkDuplicates Tracking 24545 as yet unmatched pairs. 22756 records in RAM. INFO 2026-06-04 22:10:17 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 2s. Last read position: chrX:47,586,641 INFO 2026-06-04 22:10:17 MarkDuplicates Tracking 22514 as yet unmatched pairs. 20725 records in RAM. INFO 2026-06-04 22:10:20 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:25:28s. Time for last 1,000,000: 2s. Last read position: chrX:49,173,174 INFO 2026-06-04 22:10:20 MarkDuplicates Tracking 23445 as yet unmatched pairs. 21656 records in RAM. INFO 2026-06-04 22:10:22 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 2s. Last read position: chrX:53,592,422 INFO 2026-06-04 22:10:22 MarkDuplicates Tracking 19040 as yet unmatched pairs. 17251 records in RAM. INFO 2026-06-04 22:10:25 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:25:33s. Time for last 1,000,000: 3s. Last read position: chrX:69,162,479 INFO 2026-06-04 22:10:25 MarkDuplicates Tracking 16846 as yet unmatched pairs. 15057 records in RAM. INFO 2026-06-04 22:10:28 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:25:35s. Time for last 1,000,000: 2s. Last read position: chrX:77,688,888 INFO 2026-06-04 22:10:28 MarkDuplicates Tracking 15383 as yet unmatched pairs. 13594 records in RAM. INFO 2026-06-04 22:10:30 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:25:38s. Time for last 1,000,000: 2s. Last read position: chrX:106,869,531 INFO 2026-06-04 22:10:30 MarkDuplicates Tracking 13064 as yet unmatched pairs. 11275 records in RAM. INFO 2026-06-04 22:10:33 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 2s. Last read position: chrX:119,872,004 INFO 2026-06-04 22:10:33 MarkDuplicates Tracking 12104 as yet unmatched pairs. 10315 records in RAM. INFO 2026-06-04 22:10:36 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 3s. Last read position: chrX:136,875,108 INFO 2026-06-04 22:10:36 MarkDuplicates Tracking 10347 as yet unmatched pairs. 8558 records in RAM. INFO 2026-06-04 22:10:38 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:25:46s. Time for last 1,000,000: 2s. Last read position: chrX:153,867,061 INFO 2026-06-04 22:10:38 MarkDuplicates Tracking 7574 as yet unmatched pairs. 5785 records in RAM. INFO 2026-06-04 22:10:41 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:25:49s. Time for last 1,000,000: 2s. Last read position: chrX:154,357,495 INFO 2026-06-04 22:10:41 MarkDuplicates Tracking 5997 as yet unmatched pairs. 4208 records in RAM. INFO 2026-06-04 22:10:43 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 2s. Last read position: chrX:154,399,536 INFO 2026-06-04 22:10:43 MarkDuplicates Tracking 5983 as yet unmatched pairs. 4194 records in RAM. INFO 2026-06-04 22:10:47 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:25:54s. Time for last 1,000,000: 3s. Last read position: GL000220.1:114,182 INFO 2026-06-04 22:10:47 MarkDuplicates Tracking 1642 as yet unmatched pairs. 743 records in RAM. INFO 2026-06-04 22:10:48 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:25:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,203 INFO 2026-06-04 22:10:48 MarkDuplicates Tracking 234 as yet unmatched pairs. 216 records in RAM. INFO 2026-06-04 22:10:49 MarkDuplicates Read 619444814 records. 0 pairs never matched. INFO 2026-06-04 22:11:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 58440277400; totalMemory: 83449872384; maxMemory: 127137742848 INFO 2026-06-04 22:11:56 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk. INFO 2026-06-04 22:12:11 MarkDuplicates Traversing read pair information and detecting duplicates. INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,503 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 2196 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,122 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,272 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,414 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1557 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,959 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1629 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,704 INFO 2026-06-04 22:13:03 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,807 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1134 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,648 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1336 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,580 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 2351 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,304 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,730 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1558 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,494 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 3092 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,631 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,250 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,619 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,133 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,062 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-04 22:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,364 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1401 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,621 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,108 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 2292 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,240 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,507 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 2019 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,358 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1526 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,711 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1789 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,620 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,192 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-04 22:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder Large duplicate set. size = 1385 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,465 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder Large duplicate set. size = 2339 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,992 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,354 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,808 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-04 22:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,169 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1218 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,348 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,424 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1224 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,982 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,150 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder Large duplicate set. size = 1173 INFO 2026-06-04 22:13:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,775 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,050 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,998 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,943 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1591 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,747 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 2627 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,768 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,826 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,575 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,817 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,244 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-04 22:13:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,503 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,050 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,099 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,055 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,567 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,871 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1664 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,376 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1430 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,433 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,244 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder Large duplicate set. size = 1194 INFO 2026-06-04 22:13:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755 INFO 2026-06-04 22:13:15 OpticalDuplicateFinder Large duplicate set. size = 1884 INFO 2026-06-04 22:13:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,995 INFO 2026-06-04 22:13:18 OpticalDuplicateFinder Large duplicate set. size = 1837 INFO 2026-06-04 22:13:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,338 INFO 2026-06-04 22:13:19 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-04 22:13:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,344 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,735 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder Large duplicate set. size = 2047 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,786 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,165 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder Large duplicate set. size = 1213 INFO 2026-06-04 22:13:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,385 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,180 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1990 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,084 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1485 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,760 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,585 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-04 22:13:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,427 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,676 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1924 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,788 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,226 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,997 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,461 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder Large duplicate set. size = 1157 INFO 2026-06-04 22:13:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,011 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,081 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder Large duplicate set. size = 1129 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,978 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder Large duplicate set. size = 1515 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,973 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-04 22:13:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,857 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,035 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,047 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,949 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder Large duplicate set. size = 1388 INFO 2026-06-04 22:13:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,123 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,318 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder Large duplicate set. size = 1151 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,735 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-04 22:13:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,413 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,770 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1274 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,424 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,019 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1403 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,695 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1761 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,445 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1695 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,231 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,790 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1990 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,258 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,432 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1598 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,535 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1702 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,157 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1674 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,249 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1867 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,834 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 2587 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,794 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1381 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,299 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 1426 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,057 INFO 2026-06-04 22:13:57 OpticalDuplicateFinder Large duplicate set. size = 3016 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,823 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,142 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,864 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1293 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,827 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,458 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,605 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,226 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1788 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 3814 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,965 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,332 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1478 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,790 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1245 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,041 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-04 22:13:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,280 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,782 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1554 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,063 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 2118 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,781 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,062 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,911 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1687 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,793 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,820 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 2613 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,128 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,709 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder Large duplicate set. size = 1318 INFO 2026-06-04 22:13:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,297 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,602 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,948 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,608 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1324 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,780 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1448 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,777 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1947 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,026 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1243 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,357 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1815 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,359 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1354 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,743 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,517 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1413 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1778 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,322 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 2484 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,255 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,944 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 2312 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,141 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,458 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 2110 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,802 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,124 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 3412 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,452 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,878 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,085 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1638 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,969 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 2153 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,771 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,856 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,931 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1370 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,424 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1312 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,662 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1236 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,091 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1998 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,418 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,090 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,234 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,620 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1517 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,948 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,603 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1614 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,177 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 2401 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,087 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,898 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,198 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1769 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,671 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder Large duplicate set. size = 1305 INFO 2026-06-04 22:14:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1169 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1777 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,557 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,912 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1229 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,914 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 2485 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,337 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,002 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,324 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1539 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,530 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 2123 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,769 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,717 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,368 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-04 22:14:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,407 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,262 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,381 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,103 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,378 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,118 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder Large duplicate set. size = 2169 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,652 INFO 2026-06-04 22:14:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,406 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1333 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,109 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,782 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,848 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,726 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder Large duplicate set. size = 1349 INFO 2026-06-04 22:14:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502 INFO 2026-06-04 22:14:41 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-04 22:14:42 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 22:16:43 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-04 22:16:46 MarkDuplicates After generateDuplicateIndexes freeMemory: 203871264; totalMemory: 234881024; maxMemory: 127137742848 INFO 2026-06-04 22:16:46 MarkDuplicates Marking 298256268 records as duplicates. INFO 2026-06-04 22:16:46 MarkDuplicates Found 14568775 optical duplicate clusters. INFO 2026-06-04 22:16:46 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-04 22:17:27 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:41s. Time for last 10,000,000: 41s. Last read position: chr1:21,831,494 INFO 2026-06-04 22:18:06 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 38s. Last read position: chr1:36,469,156 INFO 2026-06-04 22:18:44 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:58s. Time for last 10,000,000: 37s. Last read position: chr1:109,235,376 INFO 2026-06-04 22:19:23 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 38s. Last read position: chr1:154,977,986 INFO 2026-06-04 22:20:01 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 38s. Last read position: chr1:183,240,066 INFO 2026-06-04 22:20:37 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 35s. Last read position: chr1:235,168,528 INFO 2026-06-04 22:21:12 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 35s. Last read position: chr2:32,916,406 INFO 2026-06-04 22:21:48 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 35s. Last read position: chr2:96,861,438 INFO 2026-06-04 22:22:24 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 36s. Last read position: chr2:178,624,588 INFO 2026-06-04 22:23:01 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 36s. Last read position: chr2:215,372,124 INFO 2026-06-04 22:23:36 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 35s. Last read position: chr2:215,407,158 INFO 2026-06-04 22:24:13 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 37s. Last read position: chr2:231,460,765 INFO 2026-06-04 22:24:52 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 39s. Last read position: chr3:48,592,144 INFO 2026-06-04 22:25:31 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 38s. Last read position: chr3:127,016,647 INFO 2026-06-04 22:26:11 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 40s. Last read position: chr3:188,609,520 INFO 2026-06-04 22:26:49 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 38s. Last read position: chr4:74,038,571 INFO 2026-06-04 22:27:29 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 39s. Last read position: chr5:14,498,095 INFO 2026-06-04 22:28:06 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 37s. Last read position: chr5:140,360,832 INFO 2026-06-04 22:28:45 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 38s. Last read position: chr5:179,774,392 INFO 2026-06-04 22:29:23 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 37s. Last read position: chr6:31,816,023 INFO 2026-06-04 22:30:00 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 37s. Last read position: chr6:56,634,919 INFO 2026-06-04 22:30:39 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 38s. Last read position: chr6:159,692,401 INFO 2026-06-04 22:31:18 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 39s. Last read position: chr7:33,146,335 INFO 2026-06-04 22:31:57 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 38s. Last read position: chr7:76,303,823 INFO 2026-06-04 22:32:33 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 36s. Last read position: chr7:127,721,345 INFO 2026-06-04 22:33:04 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:16:17s. Time for last 10,000,000: 30s. Last read position: chr8:47,737,421 INFO 2026-06-04 22:33:31 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 27s. Last read position: chr8:133,262,085 INFO 2026-06-04 22:33:58 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:17:12s. Time for last 10,000,000: 27s. Last read position: chr9:35,607,598 INFO 2026-06-04 22:34:26 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:17:39s. Time for last 10,000,000: 27s. Last read position: chr9:115,086,478 INFO 2026-06-04 22:34:51 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:18:05s. Time for last 10,000,000: 25s. Last read position: chr10:17,229,851 INFO 2026-06-04 22:35:17 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:18:30s. Time for last 10,000,000: 25s. Last read position: chr10:87,792,746 INFO 2026-06-04 22:35:35 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:18:49s. Time for last 10,000,000: 18s. Last read position: chr11:320,618 INFO 2026-06-04 22:35:57 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:19:10s. Time for last 10,000,000: 21s. Last read position: chr11:47,378,326 INFO 2026-06-04 22:36:15 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:19:29s. Time for last 10,000,000: 18s. Last read position: chr11:64,860,287 INFO 2026-06-04 22:36:33 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:19:46s. Time for last 10,000,000: 17s. Last read position: chr11:77,016,763 INFO 2026-06-04 22:36:50 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:20:04s. Time for last 10,000,000: 17s. Last read position: chr12:4,659,056 INFO 2026-06-04 22:37:08 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:20:21s. Time for last 10,000,000: 17s. Last read position: chr12:49,484,639 INFO 2026-06-04 22:37:25 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:20:39s. Time for last 10,000,000: 17s. Last read position: chr12:57,091,154 INFO 2026-06-04 22:37:44 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:20:57s. Time for last 10,000,000: 18s. Last read position: chr12:113,387,005 INFO 2026-06-04 22:38:03 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:21:17s. Time for last 10,000,000: 19s. Last read position: chr13:97,992,989 INFO 2026-06-04 22:38:22 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:21:35s. Time for last 10,000,000: 18s. Last read position: chr14:55,667,256 INFO 2026-06-04 22:38:40 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:21:53s. Time for last 10,000,000: 17s. Last read position: chr14:104,941,418 INFO 2026-06-04 22:38:57 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:22:11s. Time for last 10,000,000: 17s. Last read position: chr15:59,224,749 INFO 2026-06-04 22:39:15 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:22:28s. Time for last 10,000,000: 17s. Last read position: chr16:2,766,381 INFO 2026-06-04 22:39:34 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:22:47s. Time for last 10,000,000: 18s. Last read position: chr16:30,070,014 INFO 2026-06-04 22:39:53 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:23:06s. Time for last 10,000,000: 18s. Last read position: chr16:74,470,004 INFO 2026-06-04 22:40:11 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:23:24s. Time for last 10,000,000: 18s. Last read position: chr17:16,382,491 INFO 2026-06-04 22:40:29 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:23:42s. Time for last 10,000,000: 17s. Last read position: chr17:41,612,240 INFO 2026-06-04 22:40:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:24:01s. Time for last 10,000,000: 18s. Last read position: chr17:50,187,878 INFO 2026-06-04 22:41:05 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:24:19s. Time for last 10,000,000: 18s. Last read position: chr17:50,194,376 INFO 2026-06-04 22:41:25 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:24:39s. Time for last 10,000,000: 19s. Last read position: chr17:59,647,449 INFO 2026-06-04 22:41:49 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:25:03s. Time for last 10,000,000: 23s. Last read position: chr17:81,672,091 INFO 2026-06-04 22:42:10 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:25:23s. Time for last 10,000,000: 20s. Last read position: chr19:581,348 INFO 2026-06-04 22:42:36 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:25:49s. Time for last 10,000,000: 25s. Last read position: chr19:11,023,608 INFO 2026-06-04 22:42:58 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:26:11s. Time for last 10,000,000: 21s. Last read position: chr19:35,023,514 INFO 2026-06-04 22:43:23 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:26:37s. Time for last 10,000,000: 25s. Last read position: chr19:48,873,424 INFO 2026-06-04 22:43:52 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:27:05s. Time for last 10,000,000: 28s. Last read position: chr20:33,640,379 INFO 2026-06-04 22:44:17 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:27:31s. Time for last 10,000,000: 25s. Last read position: chr21:8,258,910 INFO 2026-06-04 22:44:40 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:27:54s. Time for last 10,000,000: 22s. Last read position: chr22:23,273,081 INFO 2026-06-04 22:45:01 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:28:14s. Time for last 10,000,000: 20s. Last read position: chr22:45,931,157 INFO 2026-06-04 22:45:21 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:28:34s. Time for last 10,000,000: 19s. Last read position: chrX:69,162,479 INFO 2026-06-04 22:45:41 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:28:54s. Time for last 10,000,000: 19s. Last read position: */* INFO 2026-06-04 22:45:46 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-04 22:45:46 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-04 22:45:46 MarkDuplicates Getting Memory Stats. INFO 2026-06-04 22:45:46 MarkDuplicates Before output close freeMemory: 203841272; totalMemory: 234881024; maxMemory: 127137742848 INFO 2026-06-04 22:45:46 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-04 22:45:46 MarkDuplicates After output close freeMemory: 104078256; totalMemory: 134217728; maxMemory: 127137742848 [Thu Jun 04 22:45:46 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 60.95 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory