Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
21:18:45.512 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu Jun 04 21:18:45 GMT 2026] MarkDuplicates --INPUT 659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Jun 04 21:18:45 GMT 2026] Executing as ?@nf-e646dbcc4a070de16ae5cff5eceac3fe-7549c-554mr on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-04 21:18:45 MarkDuplicates Start of doWork freeMemory: 105828464; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-04 21:18:45 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-04 21:18:45 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-04 21:18:48 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,402,137
INFO 2026-06-04 21:18:48 MarkDuplicates Tracking 3510 as yet unmatched pairs. 1080 records in RAM.
INFO 2026-06-04 21:18:51 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:3,781,060
INFO 2026-06-04 21:18:51 MarkDuplicates Tracking 4977 as yet unmatched pairs. 463 records in RAM.
INFO 2026-06-04 21:18:53 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,866,313
INFO 2026-06-04 21:18:53 MarkDuplicates Tracking 8001 as yet unmatched pairs. 1581 records in RAM.
INFO 2026-06-04 21:18:55 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:11,285,767
INFO 2026-06-04 21:18:55 MarkDuplicates Tracking 8730 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-04 21:18:56 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:15,916,173
INFO 2026-06-04 21:18:56 MarkDuplicates Tracking 10990 as yet unmatched pairs. 455 records in RAM.
INFO 2026-06-04 21:18:58 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:17,656,608
INFO 2026-06-04 21:18:58 MarkDuplicates Tracking 13233 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-04 21:19:00 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:19,975,784
INFO 2026-06-04 21:19:00 MarkDuplicates Tracking 38679 as yet unmatched pairs. 24168 records in RAM.
INFO 2026-06-04 21:19:02 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,833,522
INFO 2026-06-04 21:19:02 MarkDuplicates Tracking 18083 as yet unmatched pairs. 1585 records in RAM.
INFO 2026-06-04 21:19:03 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:22,638,972
INFO 2026-06-04 21:19:03 MarkDuplicates Tracking 20347 as yet unmatched pairs. 1742 records in RAM.
INFO 2026-06-04 21:19:05 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:23,759,582
INFO 2026-06-04 21:19:05 MarkDuplicates Tracking 20664 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-04 21:19:07 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:26,344,599
INFO 2026-06-04 21:19:07 MarkDuplicates Tracking 22722 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-04 21:19:09 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:27,744,709
INFO 2026-06-04 21:19:09 MarkDuplicates Tracking 24635 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-04 21:19:10 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:31,433,060
INFO 2026-06-04 21:19:10 MarkDuplicates Tracking 27405 as yet unmatched pairs. 973 records in RAM.
INFO 2026-06-04 21:19:12 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:32,659,485
INFO 2026-06-04 21:19:12 MarkDuplicates Tracking 28785 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-04 21:19:15 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:35,390,051
INFO 2026-06-04 21:19:15 MarkDuplicates Tracking 30879 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-04 21:19:17 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:39,283,438
INFO 2026-06-04 21:19:17 MarkDuplicates Tracking 33738 as yet unmatched pairs. 1049 records in RAM.
INFO 2026-06-04 21:19:18 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:40,092,457
INFO 2026-06-04 21:19:18 MarkDuplicates Tracking 35148 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-04 21:19:20 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,826
INFO 2026-06-04 21:19:20 MarkDuplicates Tracking 37369 as yet unmatched pairs. 672 records in RAM.
INFO 2026-06-04 21:19:22 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:45,591,255
INFO 2026-06-04 21:19:22 MarkDuplicates Tracking 39642 as yet unmatched pairs. 905 records in RAM.
INFO 2026-06-04 21:19:24 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:51,468,557
INFO 2026-06-04 21:19:24 MarkDuplicates Tracking 41798 as yet unmatched pairs. 1112 records in RAM.
INFO 2026-06-04 21:19:25 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:54,883,681
INFO 2026-06-04 21:19:25 MarkDuplicates Tracking 43474 as yet unmatched pairs. 756 records in RAM.
INFO 2026-06-04 21:19:27 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:65,429,924
INFO 2026-06-04 21:19:27 MarkDuplicates Tracking 45777 as yet unmatched pairs. 1134 records in RAM.
INFO 2026-06-04 21:19:28 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:85,190,585
INFO 2026-06-04 21:19:28 MarkDuplicates Tracking 46567 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-04 21:19:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:92,836,263
INFO 2026-06-04 21:19:30 MarkDuplicates Tracking 50953 as yet unmatched pairs. 2634 records in RAM.
INFO 2026-06-04 21:19:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:103,031,199
INFO 2026-06-04 21:19:31 MarkDuplicates Tracking 50554 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-04 21:19:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:110,018,351
INFO 2026-06-04 21:19:33 MarkDuplicates Tracking 52493 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-04 21:19:34 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:113,651,156
INFO 2026-06-04 21:19:34 MarkDuplicates Tracking 54786 as yet unmatched pairs. 815 records in RAM.
INFO 2026-06-04 21:19:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,467
INFO 2026-06-04 21:19:36 MarkDuplicates Tracking 60007 as yet unmatched pairs. 4109 records in RAM.
INFO 2026-06-04 21:19:38 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:119,915,988
INFO 2026-06-04 21:19:38 MarkDuplicates Tracking 60152 as yet unmatched pairs. 2424 records in RAM.
INFO 2026-06-04 21:19:40 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:144,415,592
INFO 2026-06-04 21:19:40 MarkDuplicates Tracking 59391 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-04 21:19:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:147,280,129
INFO 2026-06-04 21:19:41 MarkDuplicates Tracking 60910 as yet unmatched pairs. 334 records in RAM.
INFO 2026-06-04 21:19:43 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:149,812,150
INFO 2026-06-04 21:19:43 MarkDuplicates Tracking 67261 as yet unmatched pairs. 5628 records in RAM.
INFO 2026-06-04 21:19:44 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,703
INFO 2026-06-04 21:19:44 MarkDuplicates Tracking 64019 as yet unmatched pairs. 906 records in RAM.
INFO 2026-06-04 21:19:46 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,267,406
INFO 2026-06-04 21:19:46 MarkDuplicates Tracking 66672 as yet unmatched pairs. 2159 records in RAM.
INFO 2026-06-04 21:19:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:150,941,332
INFO 2026-06-04 21:19:47 MarkDuplicates Tracking 66729 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-04 21:19:49 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,983,295
INFO 2026-06-04 21:19:49 MarkDuplicates Tracking 75895 as yet unmatched pairs. 7485 records in RAM.
INFO 2026-06-04 21:19:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,982,086
INFO 2026-06-04 21:19:51 MarkDuplicates Tracking 71024 as yet unmatched pairs. 641 records in RAM.
INFO 2026-06-04 21:19:53 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:154,173,146
INFO 2026-06-04 21:19:53 MarkDuplicates Tracking 86198 as yet unmatched pairs. 14069 records in RAM.
INFO 2026-06-04 21:19:55 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,972
INFO 2026-06-04 21:19:55 MarkDuplicates Tracking 75874 as yet unmatched pairs. 1914 records in RAM.
INFO 2026-06-04 21:19:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,393
INFO 2026-06-04 21:19:56 MarkDuplicates Tracking 76956 as yet unmatched pairs. 1033 records in RAM.
INFO 2026-06-04 21:19:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,659,818
INFO 2026-06-04 21:19:57 MarkDuplicates Tracking 78044 as yet unmatched pairs. 493 records in RAM.
INFO 2026-06-04 21:19:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,432
INFO 2026-06-04 21:19:59 MarkDuplicates Tracking 86228 as yet unmatched pairs. 6570 records in RAM.
INFO 2026-06-04 21:20:01 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,312,042
INFO 2026-06-04 21:20:01 MarkDuplicates Tracking 83110 as yet unmatched pairs. 1328 records in RAM.
INFO 2026-06-04 21:20:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:159,020,389
INFO 2026-06-04 21:20:02 MarkDuplicates Tracking 84840 as yet unmatched pairs. 1189 records in RAM.
INFO 2026-06-04 21:20:04 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:161,042,122
INFO 2026-06-04 21:20:04 MarkDuplicates Tracking 86507 as yet unmatched pairs. 830 records in RAM.
INFO 2026-06-04 21:20:05 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:161,997,993
INFO 2026-06-04 21:20:05 MarkDuplicates Tracking 88103 as yet unmatched pairs. 546 records in RAM.
INFO 2026-06-04 21:20:07 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,767
INFO 2026-06-04 21:20:07 MarkDuplicates Tracking 94600 as yet unmatched pairs. 5030 records in RAM.
INFO 2026-06-04 21:20:08 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:171,535,505
INFO 2026-06-04 21:20:08 MarkDuplicates Tracking 92200 as yet unmatched pairs. 744 records in RAM.
INFO 2026-06-04 21:20:10 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:175,018,468
INFO 2026-06-04 21:20:10 MarkDuplicates Tracking 93730 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-04 21:20:11 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:182,602,421
INFO 2026-06-04 21:20:11 MarkDuplicates Tracking 95471 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-04 21:20:13 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:185,308,810
INFO 2026-06-04 21:20:13 MarkDuplicates Tracking 99274 as yet unmatched pairs. 1928 records in RAM.
INFO 2026-06-04 21:20:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:196,677,486
INFO 2026-06-04 21:20:14 MarkDuplicates Tracking 99378 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-04 21:20:16 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:201,485,320
INFO 2026-06-04 21:20:16 MarkDuplicates Tracking 103981 as yet unmatched pairs. 2817 records in RAM.
INFO 2026-06-04 21:20:17 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:202,950,945
INFO 2026-06-04 21:20:17 MarkDuplicates Tracking 104041 as yet unmatched pairs. 981 records in RAM.
INFO 2026-06-04 21:20:20 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:204,440,303
INFO 2026-06-04 21:20:20 MarkDuplicates Tracking 105300 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-04 21:20:21 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:207,337,343
INFO 2026-06-04 21:20:21 MarkDuplicates Tracking 112205 as yet unmatched pairs. 5356 records in RAM.
INFO 2026-06-04 21:20:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:213,240,842
INFO 2026-06-04 21:20:22 MarkDuplicates Tracking 109211 as yet unmatched pairs. 354 records in RAM.
INFO 2026-06-04 21:20:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:221,739,256
INFO 2026-06-04 21:20:24 MarkDuplicates Tracking 110857 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-04 21:20:26 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:225,519,218
INFO 2026-06-04 21:20:26 MarkDuplicates Tracking 112788 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-04 21:20:27 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:227,028,721
INFO 2026-06-04 21:20:27 MarkDuplicates Tracking 116112 as yet unmatched pairs. 1719 records in RAM.
INFO 2026-06-04 21:20:28 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:230,995,837
INFO 2026-06-04 21:20:28 MarkDuplicates Tracking 116921 as yet unmatched pairs. 251 records in RAM.
INFO 2026-06-04 21:20:30 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:235,808,332
INFO 2026-06-04 21:20:30 MarkDuplicates Tracking 119003 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-04 21:20:32 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:244,855,926
INFO 2026-06-04 21:20:32 MarkDuplicates Tracking 122602 as yet unmatched pairs. 1640 records in RAM.
INFO 2026-06-04 21:20:34 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:1,680,232
INFO 2026-06-04 21:20:34 MarkDuplicates Tracking 123318 as yet unmatched pairs. 120854 records in RAM.
INFO 2026-06-04 21:20:35 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:11,782,421
INFO 2026-06-04 21:20:35 MarkDuplicates Tracking 125252 as yet unmatched pairs. 122757 records in RAM.
INFO 2026-06-04 21:20:38 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:24,334,710
INFO 2026-06-04 21:20:38 MarkDuplicates Tracking 127066 as yet unmatched pairs. 124529 records in RAM.
INFO 2026-06-04 21:20:39 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:27,216,891
INFO 2026-06-04 21:20:39 MarkDuplicates Tracking 129323 as yet unmatched pairs. 126750 records in RAM.
INFO 2026-06-04 21:20:41 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:32,064,213
INFO 2026-06-04 21:20:41 MarkDuplicates Tracking 131337 as yet unmatched pairs. 128728 records in RAM.
INFO 2026-06-04 21:20:43 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:20:43 MarkDuplicates Tracking 301520 as yet unmatched pairs. 117918 records in RAM.
INFO 2026-06-04 21:20:45 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,351
INFO 2026-06-04 21:20:45 MarkDuplicates Tracking 945232 as yet unmatched pairs. 73811 records in RAM.
INFO 2026-06-04 21:20:47 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-04 21:20:47 MarkDuplicates Tracking 1012316 as yet unmatched pairs. 69420 records in RAM.
INFO 2026-06-04 21:20:48 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:37,109,198
INFO 2026-06-04 21:20:48 MarkDuplicates Tracking 1061726 as yet unmatched pairs. 66389 records in RAM.
INFO 2026-06-04 21:20:50 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,459
INFO 2026-06-04 21:20:50 MarkDuplicates Tracking 1060009 as yet unmatched pairs. 64605 records in RAM.
INFO 2026-06-04 21:20:52 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:47,369,352
INFO 2026-06-04 21:20:52 MarkDuplicates Tracking 1058729 as yet unmatched pairs. 63300 records in RAM.
INFO 2026-06-04 21:20:53 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,562
INFO 2026-06-04 21:20:53 MarkDuplicates Tracking 1057321 as yet unmatched pairs. 61844 records in RAM.
INFO 2026-06-04 21:20:56 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:55,533,782
INFO 2026-06-04 21:20:56 MarkDuplicates Tracking 1053332 as yet unmatched pairs. 57824 records in RAM.
INFO 2026-06-04 21:20:57 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:65,020,912
INFO 2026-06-04 21:20:57 MarkDuplicates Tracking 1051513 as yet unmatched pairs. 55966 records in RAM.
INFO 2026-06-04 21:20:59 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:69,825,467
INFO 2026-06-04 21:20:59 MarkDuplicates Tracking 1051625 as yet unmatched pairs. 56029 records in RAM.
INFO 2026-06-04 21:21:00 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:74,156,476
INFO 2026-06-04 21:21:00 MarkDuplicates Tracking 1048256 as yet unmatched pairs. 52625 records in RAM.
INFO 2026-06-04 21:21:02 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:79,122,061
INFO 2026-06-04 21:21:02 MarkDuplicates Tracking 1054234 as yet unmatched pairs. 58573 records in RAM.
INFO 2026-06-04 21:21:03 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:86,612,206
INFO 2026-06-04 21:21:03 MarkDuplicates Tracking 1044236 as yet unmatched pairs. 48527 records in RAM.
INFO 2026-06-04 21:21:05 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:96,552,253
INFO 2026-06-04 21:21:05 MarkDuplicates Tracking 1042556 as yet unmatched pairs. 46794 records in RAM.
INFO 2026-06-04 21:21:06 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:101,887,166
INFO 2026-06-04 21:21:06 MarkDuplicates Tracking 1041202 as yet unmatched pairs. 45400 records in RAM.
INFO 2026-06-04 21:21:08 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,800
INFO 2026-06-04 21:21:08 MarkDuplicates Tracking 1040420 as yet unmatched pairs. 44591 records in RAM.
INFO 2026-06-04 21:21:09 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:112,646,921
INFO 2026-06-04 21:21:09 MarkDuplicates Tracking 1038091 as yet unmatched pairs. 42223 records in RAM.
INFO 2026-06-04 21:21:11 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:127,713,592
INFO 2026-06-04 21:21:11 MarkDuplicates Tracking 1035906 as yet unmatched pairs. 39971 records in RAM.
INFO 2026-06-04 21:21:12 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:144,228,169
INFO 2026-06-04 21:21:12 MarkDuplicates Tracking 1034043 as yet unmatched pairs. 38056 records in RAM.
INFO 2026-06-04 21:21:14 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:159,817,028
INFO 2026-06-04 21:21:14 MarkDuplicates Tracking 1032831 as yet unmatched pairs. 36785 records in RAM.
INFO 2026-06-04 21:21:16 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:171,707,286
INFO 2026-06-04 21:21:16 MarkDuplicates Tracking 1031580 as yet unmatched pairs. 35489 records in RAM.
INFO 2026-06-04 21:21:17 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:177,219,143
INFO 2026-06-04 21:21:17 MarkDuplicates Tracking 1030662 as yet unmatched pairs. 34511 records in RAM.
INFO 2026-06-04 21:21:18 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:186,669,703
INFO 2026-06-04 21:21:18 MarkDuplicates Tracking 1027745 as yet unmatched pairs. 31540 records in RAM.
INFO 2026-06-04 21:21:20 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:188,997,734
INFO 2026-06-04 21:21:20 MarkDuplicates Tracking 1032019 as yet unmatched pairs. 35769 records in RAM.
INFO 2026-06-04 21:21:22 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,773
INFO 2026-06-04 21:21:22 MarkDuplicates Tracking 1029813 as yet unmatched pairs. 33540 records in RAM.
INFO 2026-06-04 21:21:23 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:190,979,854
INFO 2026-06-04 21:21:23 MarkDuplicates Tracking 1022012 as yet unmatched pairs. 25704 records in RAM.
INFO 2026-06-04 21:21:25 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:200,818,814
INFO 2026-06-04 21:21:25 MarkDuplicates Tracking 1019720 as yet unmatched pairs. 23378 records in RAM.
INFO 2026-06-04 21:21:27 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:206,162,537
INFO 2026-06-04 21:21:27 MarkDuplicates Tracking 1019035 as yet unmatched pairs. 22651 records in RAM.
INFO 2026-06-04 21:21:29 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,983
INFO 2026-06-04 21:21:29 MarkDuplicates Tracking 1022114 as yet unmatched pairs. 25676 records in RAM.
INFO 2026-06-04 21:21:31 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,071
INFO 2026-06-04 21:21:31 MarkDuplicates Tracking 1019660 as yet unmatched pairs. 23212 records in RAM.
INFO 2026-06-04 21:21:33 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,933
INFO 2026-06-04 21:21:33 MarkDuplicates Tracking 1014105 as yet unmatched pairs. 17644 records in RAM.
INFO 2026-06-04 21:21:34 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,297
INFO 2026-06-04 21:21:34 MarkDuplicates Tracking 1017123 as yet unmatched pairs. 20648 records in RAM.
INFO 2026-06-04 21:21:36 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:218,403,227
INFO 2026-06-04 21:21:36 MarkDuplicates Tracking 1008927 as yet unmatched pairs. 12423 records in RAM.
INFO 2026-06-04 21:21:38 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:222,424,758
INFO 2026-06-04 21:21:38 MarkDuplicates Tracking 1006259 as yet unmatched pairs. 9723 records in RAM.
INFO 2026-06-04 21:21:40 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:230,877,479
INFO 2026-06-04 21:21:40 MarkDuplicates Tracking 1004708 as yet unmatched pairs. 8111 records in RAM.
INFO 2026-06-04 21:21:41 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:232,920,335
INFO 2026-06-04 21:21:41 MarkDuplicates Tracking 1002386 as yet unmatched pairs. 5764 records in RAM.
INFO 2026-06-04 21:21:43 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:237,368,569
INFO 2026-06-04 21:21:43 MarkDuplicates Tracking 1002749 as yet unmatched pairs. 6095 records in RAM.
INFO 2026-06-04 21:21:45 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:240,525,734
INFO 2026-06-04 21:21:45 MarkDuplicates Tracking 998377 as yet unmatched pairs. 1689 records in RAM.
INFO 2026-06-04 21:21:46 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:4,983,522
INFO 2026-06-04 21:21:46 MarkDuplicates Tracking 997939 as yet unmatched pairs. 50576 records in RAM.
INFO 2026-06-04 21:21:48 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:12,608,817
INFO 2026-06-04 21:21:48 MarkDuplicates Tracking 996287 as yet unmatched pairs. 48875 records in RAM.
INFO 2026-06-04 21:21:49 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:22,382,289
INFO 2026-06-04 21:21:49 MarkDuplicates Tracking 992691 as yet unmatched pairs. 45208 records in RAM.
INFO 2026-06-04 21:21:51 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:37,011,840
INFO 2026-06-04 21:21:51 MarkDuplicates Tracking 990991 as yet unmatched pairs. 43447 records in RAM.
INFO 2026-06-04 21:21:52 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,541
INFO 2026-06-04 21:21:52 MarkDuplicates Tracking 995885 as yet unmatched pairs. 48308 records in RAM.
INFO 2026-06-04 21:21:54 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:46,019,900
INFO 2026-06-04 21:21:54 MarkDuplicates Tracking 986993 as yet unmatched pairs. 39362 records in RAM.
INFO 2026-06-04 21:21:56 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:47,915,962
INFO 2026-06-04 21:21:56 MarkDuplicates Tracking 986312 as yet unmatched pairs. 38649 records in RAM.
INFO 2026-06-04 21:21:57 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:49,026,678
INFO 2026-06-04 21:21:57 MarkDuplicates Tracking 983792 as yet unmatched pairs. 36102 records in RAM.
INFO 2026-06-04 21:21:59 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:49,722,647
INFO 2026-06-04 21:21:59 MarkDuplicates Tracking 981023 as yet unmatched pairs. 33310 records in RAM.
INFO 2026-06-04 21:22:00 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,106
INFO 2026-06-04 21:22:00 MarkDuplicates Tracking 982163 as yet unmatched pairs. 34409 records in RAM.
INFO 2026-06-04 21:22:02 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:53,762,485
INFO 2026-06-04 21:22:02 MarkDuplicates Tracking 977017 as yet unmatched pairs. 29229 records in RAM.
INFO 2026-06-04 21:22:04 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:61,562,280
INFO 2026-06-04 21:22:04 MarkDuplicates Tracking 975436 as yet unmatched pairs. 27588 records in RAM.
INFO 2026-06-04 21:22:05 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:88,055,459
INFO 2026-06-04 21:22:05 MarkDuplicates Tracking 973850 as yet unmatched pairs. 25932 records in RAM.
INFO 2026-06-04 21:22:06 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:101,681,129
INFO 2026-06-04 21:22:06 MarkDuplicates Tracking 975137 as yet unmatched pairs. 27184 records in RAM.
INFO 2026-06-04 21:22:08 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:114,380,273
INFO 2026-06-04 21:22:08 MarkDuplicates Tracking 970083 as yet unmatched pairs. 22083 records in RAM.
INFO 2026-06-04 21:22:10 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:122,872,414
INFO 2026-06-04 21:22:10 MarkDuplicates Tracking 968111 as yet unmatched pairs. 20050 records in RAM.
INFO 2026-06-04 21:22:11 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:127,606,682
INFO 2026-06-04 21:22:11 MarkDuplicates Tracking 966144 as yet unmatched pairs. 18050 records in RAM.
INFO 2026-06-04 21:22:13 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:129,573,718
INFO 2026-06-04 21:22:13 MarkDuplicates Tracking 964290 as yet unmatched pairs. 16173 records in RAM.
INFO 2026-06-04 21:22:15 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:139,373,694
INFO 2026-06-04 21:22:15 MarkDuplicates Tracking 963182 as yet unmatched pairs. 15012 records in RAM.
INFO 2026-06-04 21:22:17 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:149,961,008
INFO 2026-06-04 21:22:17 MarkDuplicates Tracking 961199 as yet unmatched pairs. 12994 records in RAM.
INFO 2026-06-04 21:22:18 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:164,982,396
INFO 2026-06-04 21:22:18 MarkDuplicates Tracking 958938 as yet unmatched pairs. 10684 records in RAM.
INFO 2026-06-04 21:22:20 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:179,219,191
INFO 2026-06-04 21:22:20 MarkDuplicates Tracking 957336 as yet unmatched pairs. 9021 records in RAM.
INFO 2026-06-04 21:22:22 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:184,317,336
INFO 2026-06-04 21:22:22 MarkDuplicates Tracking 957487 as yet unmatched pairs. 9132 records in RAM.
INFO 2026-06-04 21:22:24 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:188,406,250
INFO 2026-06-04 21:22:24 MarkDuplicates Tracking 954658 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-04 21:22:26 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,329
INFO 2026-06-04 21:22:26 MarkDuplicates Tracking 951525 as yet unmatched pairs. 3084 records in RAM.
INFO 2026-06-04 21:22:27 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:195,783,263
INFO 2026-06-04 21:22:27 MarkDuplicates Tracking 956173 as yet unmatched pairs. 7709 records in RAM.
INFO 2026-06-04 21:22:28 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:196,270,467
INFO 2026-06-04 21:22:28 MarkDuplicates Tracking 949406 as yet unmatched pairs. 927 records in RAM.
INFO 2026-06-04 21:22:30 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:1,170,457
INFO 2026-06-04 21:22:30 MarkDuplicates Tracking 948511 as yet unmatched pairs. 36613 records in RAM.
INFO 2026-06-04 21:22:32 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:1,983,916
INFO 2026-06-04 21:22:32 MarkDuplicates Tracking 945530 as yet unmatched pairs. 33583 records in RAM.
INFO 2026-06-04 21:22:33 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:6,301,914
INFO 2026-06-04 21:22:33 MarkDuplicates Tracking 943406 as yet unmatched pairs. 31407 records in RAM.
INFO 2026-06-04 21:22:35 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:10,084,486
INFO 2026-06-04 21:22:35 MarkDuplicates Tracking 944421 as yet unmatched pairs. 32370 records in RAM.
INFO 2026-06-04 21:22:36 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:24,584,324
INFO 2026-06-04 21:22:36 MarkDuplicates Tracking 940152 as yet unmatched pairs. 28048 records in RAM.
INFO 2026-06-04 21:22:38 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:39,457,602
INFO 2026-06-04 21:22:38 MarkDuplicates Tracking 940471 as yet unmatched pairs. 28323 records in RAM.
INFO 2026-06-04 21:22:39 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:48,557,495
INFO 2026-06-04 21:22:39 MarkDuplicates Tracking 935850 as yet unmatched pairs. 23640 records in RAM.
INFO 2026-06-04 21:22:41 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:56,453,741
INFO 2026-06-04 21:22:41 MarkDuplicates Tracking 936846 as yet unmatched pairs. 24603 records in RAM.
INFO 2026-06-04 21:22:42 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:70,833,188
INFO 2026-06-04 21:22:42 MarkDuplicates Tracking 934320 as yet unmatched pairs. 22054 records in RAM.
INFO 2026-06-04 21:22:44 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:75,800,357
INFO 2026-06-04 21:22:44 MarkDuplicates Tracking 932056 as yet unmatched pairs. 19740 records in RAM.
INFO 2026-06-04 21:22:45 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:76,949,804
INFO 2026-06-04 21:22:45 MarkDuplicates Tracking 928848 as yet unmatched pairs. 16503 records in RAM.
INFO 2026-06-04 21:22:47 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:82,845,112
INFO 2026-06-04 21:22:47 MarkDuplicates Tracking 926793 as yet unmatched pairs. 14404 records in RAM.
INFO 2026-06-04 21:22:49 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr4:94,455,312
INFO 2026-06-04 21:22:49 MarkDuplicates Tracking 925759 as yet unmatched pairs. 13332 records in RAM.
INFO 2026-06-04 21:22:50 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:108,650,709
INFO 2026-06-04 21:22:50 MarkDuplicates Tracking 923498 as yet unmatched pairs. 11003 records in RAM.
INFO 2026-06-04 21:22:52 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:121,686,288
INFO 2026-06-04 21:22:52 MarkDuplicates Tracking 922227 as yet unmatched pairs. 9706 records in RAM.
INFO 2026-06-04 21:22:53 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:142,086,189
INFO 2026-06-04 21:22:53 MarkDuplicates Tracking 918943 as yet unmatched pairs. 6375 records in RAM.
INFO 2026-06-04 21:22:55 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:153,270,343
INFO 2026-06-04 21:22:55 MarkDuplicates Tracking 918690 as yet unmatched pairs. 6068 records in RAM.
INFO 2026-06-04 21:22:57 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:169,636,040
INFO 2026-06-04 21:22:57 MarkDuplicates Tracking 915759 as yet unmatched pairs. 3098 records in RAM.
INFO 2026-06-04 21:22:59 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:186,620,338
INFO 2026-06-04 21:22:59 MarkDuplicates Tracking 914307 as yet unmatched pairs. 1612 records in RAM.
INFO 2026-06-04 21:23:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr5:1,494,775
INFO 2026-06-04 21:23:01 MarkDuplicates Tracking 912025 as yet unmatched pairs. 50487 records in RAM.
INFO 2026-06-04 21:23:02 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:14,316,683
INFO 2026-06-04 21:23:02 MarkDuplicates Tracking 911662 as yet unmatched pairs. 50095 records in RAM.
INFO 2026-06-04 21:23:04 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:16,465,416
INFO 2026-06-04 21:23:04 MarkDuplicates Tracking 907653 as yet unmatched pairs. 46053 records in RAM.
INFO 2026-06-04 21:23:05 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:34,953,969
INFO 2026-06-04 21:23:05 MarkDuplicates Tracking 905935 as yet unmatched pairs. 44294 records in RAM.
INFO 2026-06-04 21:23:07 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr5:42,800,681
INFO 2026-06-04 21:23:07 MarkDuplicates Tracking 907435 as yet unmatched pairs. 45767 records in RAM.
INFO 2026-06-04 21:23:09 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:55,344,572
INFO 2026-06-04 21:23:09 MarkDuplicates Tracking 902009 as yet unmatched pairs. 40285 records in RAM.
INFO 2026-06-04 21:23:10 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,175
INFO 2026-06-04 21:23:10 MarkDuplicates Tracking 900619 as yet unmatched pairs. 38835 records in RAM.
INFO 2026-06-04 21:23:11 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:74,720,467
INFO 2026-06-04 21:23:11 MarkDuplicates Tracking 900771 as yet unmatched pairs. 38948 records in RAM.
INFO 2026-06-04 21:23:13 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,138
INFO 2026-06-04 21:23:13 MarkDuplicates Tracking 906468 as yet unmatched pairs. 44603 records in RAM.
INFO 2026-06-04 21:23:15 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:95,822,507
INFO 2026-06-04 21:23:15 MarkDuplicates Tracking 895343 as yet unmatched pairs. 33421 records in RAM.
INFO 2026-06-04 21:23:16 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:111,224,579
INFO 2026-06-04 21:23:16 MarkDuplicates Tracking 893001 as yet unmatched pairs. 31028 records in RAM.
INFO 2026-06-04 21:23:18 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:128,114,234
INFO 2026-06-04 21:23:18 MarkDuplicates Tracking 892911 as yet unmatched pairs. 30902 records in RAM.
INFO 2026-06-04 21:23:19 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:134,197,786
INFO 2026-06-04 21:23:19 MarkDuplicates Tracking 891441 as yet unmatched pairs. 29383 records in RAM.
INFO 2026-06-04 21:23:21 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:137,753,136
INFO 2026-06-04 21:23:21 MarkDuplicates Tracking 887508 as yet unmatched pairs. 25421 records in RAM.
INFO 2026-06-04 21:23:22 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:139,325,464
INFO 2026-06-04 21:23:22 MarkDuplicates Tracking 886473 as yet unmatched pairs. 24344 records in RAM.
INFO 2026-06-04 21:23:24 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:141,415,425
INFO 2026-06-04 21:23:24 MarkDuplicates Tracking 884438 as yet unmatched pairs. 22254 records in RAM.
INFO 2026-06-04 21:23:26 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr5:146,510,498
INFO 2026-06-04 21:23:26 MarkDuplicates Tracking 882065 as yet unmatched pairs. 19811 records in RAM.
INFO 2026-06-04 21:23:28 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,670
INFO 2026-06-04 21:23:28 MarkDuplicates Tracking 883458 as yet unmatched pairs. 21179 records in RAM.
INFO 2026-06-04 21:23:29 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,310
INFO 2026-06-04 21:23:29 MarkDuplicates Tracking 901127 as yet unmatched pairs. 38829 records in RAM.
INFO 2026-06-04 21:23:31 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,249
INFO 2026-06-04 21:23:31 MarkDuplicates Tracking 894108 as yet unmatched pairs. 31795 records in RAM.
INFO 2026-06-04 21:23:33 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:151,671,638
INFO 2026-06-04 21:23:33 MarkDuplicates Tracking 877863 as yet unmatched pairs. 15527 records in RAM.
INFO 2026-06-04 21:23:35 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:160,602,638
INFO 2026-06-04 21:23:35 MarkDuplicates Tracking 872552 as yet unmatched pairs. 10188 records in RAM.
INFO 2026-06-04 21:23:37 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,958
INFO 2026-06-04 21:23:37 MarkDuplicates Tracking 877634 as yet unmatched pairs. 15247 records in RAM.
INFO 2026-06-04 21:23:38 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:177,022,734
INFO 2026-06-04 21:23:38 MarkDuplicates Tracking 868545 as yet unmatched pairs. 6129 records in RAM.
INFO 2026-06-04 21:23:40 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:178,616,912
INFO 2026-06-04 21:23:40 MarkDuplicates Tracking 866525 as yet unmatched pairs. 4094 records in RAM.
INFO 2026-06-04 21:23:41 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,019
INFO 2026-06-04 21:23:41 MarkDuplicates Tracking 868467 as yet unmatched pairs. 6011 records in RAM.
INFO 2026-06-04 21:23:43 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:181,256,792
INFO 2026-06-04 21:23:43 MarkDuplicates Tracking 862612 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-04 21:23:45 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr6:7,248,552
INFO 2026-06-04 21:23:45 MarkDuplicates Tracking 861053 as yet unmatched pairs. 63805 records in RAM.
INFO 2026-06-04 21:23:46 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr6:16,129,339
INFO 2026-06-04 21:23:46 MarkDuplicates Tracking 858834 as yet unmatched pairs. 61538 records in RAM.
INFO 2026-06-04 21:23:48 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:24,667,279
INFO 2026-06-04 21:23:48 MarkDuplicates Tracking 858879 as yet unmatched pairs. 61533 records in RAM.
INFO 2026-06-04 21:23:50 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,568
INFO 2026-06-04 21:23:50 MarkDuplicates Tracking 857904 as yet unmatched pairs. 60523 records in RAM.
INFO 2026-06-04 21:23:51 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:26,407,681
INFO 2026-06-04 21:23:51 MarkDuplicates Tracking 853791 as yet unmatched pairs. 56397 records in RAM.
INFO 2026-06-04 21:23:52 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:27,838,003
INFO 2026-06-04 21:23:52 MarkDuplicates Tracking 851815 as yet unmatched pairs. 54409 records in RAM.
INFO 2026-06-04 21:23:54 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,339
INFO 2026-06-04 21:23:54 MarkDuplicates Tracking 854370 as yet unmatched pairs. 56935 records in RAM.
INFO 2026-06-04 21:23:55 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:30,688,686
INFO 2026-06-04 21:23:55 MarkDuplicates Tracking 848103 as yet unmatched pairs. 50645 records in RAM.
INFO 2026-06-04 21:23:57 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,846
INFO 2026-06-04 21:23:57 MarkDuplicates Tracking 853414 as yet unmatched pairs. 55919 records in RAM.
INFO 2026-06-04 21:23:58 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,131
INFO 2026-06-04 21:23:58 MarkDuplicates Tracking 845190 as yet unmatched pairs. 47664 records in RAM.
INFO 2026-06-04 21:24:00 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr6:31,829,257
INFO 2026-06-04 21:24:00 MarkDuplicates Tracking 845133 as yet unmatched pairs. 47587 records in RAM.
INFO 2026-06-04 21:24:02 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,034,573
INFO 2026-06-04 21:24:02 MarkDuplicates Tracking 841493 as yet unmatched pairs. 43933 records in RAM.
INFO 2026-06-04 21:24:04 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,843,850
INFO 2026-06-04 21:24:04 MarkDuplicates Tracking 839795 as yet unmatched pairs. 42221 records in RAM.
INFO 2026-06-04 21:24:06 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr6:33,301,670
INFO 2026-06-04 21:24:06 MarkDuplicates Tracking 838284 as yet unmatched pairs. 40697 records in RAM.
INFO 2026-06-04 21:24:08 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:34,421,763
INFO 2026-06-04 21:24:08 MarkDuplicates Tracking 837466 as yet unmatched pairs. 39866 records in RAM.
INFO 2026-06-04 21:24:09 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:37,478,470
INFO 2026-06-04 21:24:09 MarkDuplicates Tracking 832977 as yet unmatched pairs. 35325 records in RAM.
INFO 2026-06-04 21:24:11 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:41,598,890
INFO 2026-06-04 21:24:11 MarkDuplicates Tracking 833584 as yet unmatched pairs. 35860 records in RAM.
INFO 2026-06-04 21:24:12 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:42,105,466
INFO 2026-06-04 21:24:12 MarkDuplicates Tracking 830513 as yet unmatched pairs. 32757 records in RAM.
INFO 2026-06-04 21:24:14 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:43,013,170
INFO 2026-06-04 21:24:14 MarkDuplicates Tracking 827686 as yet unmatched pairs. 29896 records in RAM.
INFO 2026-06-04 21:24:16 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:43,521,296
INFO 2026-06-04 21:24:16 MarkDuplicates Tracking 824689 as yet unmatched pairs. 26877 records in RAM.
INFO 2026-06-04 21:24:17 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:47,607,927
INFO 2026-06-04 21:24:17 MarkDuplicates Tracking 824529 as yet unmatched pairs. 26677 records in RAM.
INFO 2026-06-04 21:24:18 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:63,576,821
INFO 2026-06-04 21:24:18 MarkDuplicates Tracking 821724 as yet unmatched pairs. 23765 records in RAM.
INFO 2026-06-04 21:24:20 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:75,184,006
INFO 2026-06-04 21:24:20 MarkDuplicates Tracking 820309 as yet unmatched pairs. 22306 records in RAM.
INFO 2026-06-04 21:24:21 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:88,140,741
INFO 2026-06-04 21:24:21 MarkDuplicates Tracking 817305 as yet unmatched pairs. 19265 records in RAM.
INFO 2026-06-04 21:24:23 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,762
INFO 2026-06-04 21:24:23 MarkDuplicates Tracking 823156 as yet unmatched pairs. 25076 records in RAM.
INFO 2026-06-04 21:24:25 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:113,956,048
INFO 2026-06-04 21:24:25 MarkDuplicates Tracking 814365 as yet unmatched pairs. 16244 records in RAM.
INFO 2026-06-04 21:24:26 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:128,184,547
INFO 2026-06-04 21:24:26 MarkDuplicates Tracking 812966 as yet unmatched pairs. 14801 records in RAM.
INFO 2026-06-04 21:24:28 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:135,187,890
INFO 2026-06-04 21:24:28 MarkDuplicates Tracking 817113 as yet unmatched pairs. 18911 records in RAM.
INFO 2026-06-04 21:24:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:136,639,623
INFO 2026-06-04 21:24:29 MarkDuplicates Tracking 808187 as yet unmatched pairs. 9968 records in RAM.
INFO 2026-06-04 21:24:31 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:139,135,315
INFO 2026-06-04 21:24:31 MarkDuplicates Tracking 805972 as yet unmatched pairs. 7716 records in RAM.
INFO 2026-06-04 21:24:33 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:151,350,469
INFO 2026-06-04 21:24:33 MarkDuplicates Tracking 804207 as yet unmatched pairs. 5908 records in RAM.
INFO 2026-06-04 21:24:34 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,352
INFO 2026-06-04 21:24:34 MarkDuplicates Tracking 805409 as yet unmatched pairs. 7071 records in RAM.
INFO 2026-06-04 21:24:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:163,415,185
INFO 2026-06-04 21:24:36 MarkDuplicates Tracking 801368 as yet unmatched pairs. 3002 records in RAM.
INFO 2026-06-04 21:24:38 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr7:677,298
INFO 2026-06-04 21:24:38 MarkDuplicates Tracking 798299 as yet unmatched pairs. 76788 records in RAM.
INFO 2026-06-04 21:24:41 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr7:2,661,710
INFO 2026-06-04 21:24:41 MarkDuplicates Tracking 796268 as yet unmatched pairs. 74723 records in RAM.
INFO 2026-06-04 21:24:42 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:5,501,475
INFO 2026-06-04 21:24:42 MarkDuplicates Tracking 793708 as yet unmatched pairs. 72125 records in RAM.
INFO 2026-06-04 21:24:44 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,394
INFO 2026-06-04 21:24:44 MarkDuplicates Tracking 806893 as yet unmatched pairs. 85284 records in RAM.
INFO 2026-06-04 21:24:45 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,542
INFO 2026-06-04 21:24:45 MarkDuplicates Tracking 803978 as yet unmatched pairs. 82337 records in RAM.
INFO 2026-06-04 21:24:47 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:8,128,092
INFO 2026-06-04 21:24:47 MarkDuplicates Tracking 787779 as yet unmatched pairs. 66100 records in RAM.
INFO 2026-06-04 21:24:49 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:20,158,610
INFO 2026-06-04 21:24:49 MarkDuplicates Tracking 786402 as yet unmatched pairs. 64698 records in RAM.
INFO 2026-06-04 21:24:50 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:27,526,348
INFO 2026-06-04 21:24:50 MarkDuplicates Tracking 784512 as yet unmatched pairs. 62775 records in RAM.
INFO 2026-06-04 21:24:52 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:36,420,224
INFO 2026-06-04 21:24:52 MarkDuplicates Tracking 782357 as yet unmatched pairs. 60576 records in RAM.
INFO 2026-06-04 21:24:53 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:44,111,602
INFO 2026-06-04 21:24:53 MarkDuplicates Tracking 781507 as yet unmatched pairs. 59697 records in RAM.
INFO 2026-06-04 21:24:55 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:47,302,221
INFO 2026-06-04 21:24:55 MarkDuplicates Tracking 779221 as yet unmatched pairs. 57391 records in RAM.
INFO 2026-06-04 21:24:56 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:56,104,242
INFO 2026-06-04 21:24:56 MarkDuplicates Tracking 778448 as yet unmatched pairs. 56588 records in RAM.
INFO 2026-06-04 21:24:58 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:73,192,512
INFO 2026-06-04 21:24:58 MarkDuplicates Tracking 775106 as yet unmatched pairs. 53213 records in RAM.
INFO 2026-06-04 21:24:59 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:74,120,973
INFO 2026-06-04 21:24:59 MarkDuplicates Tracking 773169 as yet unmatched pairs. 51253 records in RAM.
INFO 2026-06-04 21:25:01 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:75,615,776
INFO 2026-06-04 21:25:01 MarkDuplicates Tracking 771550 as yet unmatched pairs. 49616 records in RAM.
INFO 2026-06-04 21:25:02 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:77,060,425
INFO 2026-06-04 21:25:02 MarkDuplicates Tracking 769931 as yet unmatched pairs. 47965 records in RAM.
INFO 2026-06-04 21:25:04 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:92,082,579
INFO 2026-06-04 21:25:04 MarkDuplicates Tracking 769123 as yet unmatched pairs. 47141 records in RAM.
INFO 2026-06-04 21:25:06 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:94,407,850
INFO 2026-06-04 21:25:06 MarkDuplicates Tracking 776799 as yet unmatched pairs. 54800 records in RAM.
INFO 2026-06-04 21:25:08 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,133
INFO 2026-06-04 21:25:08 MarkDuplicates Tracking 773835 as yet unmatched pairs. 51817 records in RAM.
INFO 2026-06-04 21:25:09 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:98,628,399
INFO 2026-06-04 21:25:09 MarkDuplicates Tracking 762145 as yet unmatched pairs. 40105 records in RAM.
INFO 2026-06-04 21:25:11 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr7:100,089,670
INFO 2026-06-04 21:25:11 MarkDuplicates Tracking 760614 as yet unmatched pairs. 38531 records in RAM.
INFO 2026-06-04 21:25:13 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:100,687,996
INFO 2026-06-04 21:25:13 MarkDuplicates Tracking 758438 as yet unmatched pairs. 36334 records in RAM.
INFO 2026-06-04 21:25:15 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,797
INFO 2026-06-04 21:25:15 MarkDuplicates Tracking 760419 as yet unmatched pairs. 38294 records in RAM.
INFO 2026-06-04 21:25:16 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,421
INFO 2026-06-04 21:25:16 MarkDuplicates Tracking 760524 as yet unmatched pairs. 38386 records in RAM.
INFO 2026-06-04 21:25:17 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,167
INFO 2026-06-04 21:25:17 MarkDuplicates Tracking 759463 as yet unmatched pairs. 37324 records in RAM.
INFO 2026-06-04 21:25:18 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 0s. Last read position: chr7:100,994,993
INFO 2026-06-04 21:25:18 MarkDuplicates Tracking 756308 as yet unmatched pairs. 34165 records in RAM.
INFO 2026-06-04 21:25:19 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,032
INFO 2026-06-04 21:25:19 MarkDuplicates Tracking 756998 as yet unmatched pairs. 34854 records in RAM.
INFO 2026-06-04 21:25:20 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,448
INFO 2026-06-04 21:25:20 MarkDuplicates Tracking 777176 as yet unmatched pairs. 55031 records in RAM.
INFO 2026-06-04 21:25:21 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,865
INFO 2026-06-04 21:25:21 MarkDuplicates Tracking 784522 as yet unmatched pairs. 62360 records in RAM.
INFO 2026-06-04 21:25:23 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,388
INFO 2026-06-04 21:25:23 MarkDuplicates Tracking 761558 as yet unmatched pairs. 39385 records in RAM.
INFO 2026-06-04 21:25:24 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,925
INFO 2026-06-04 21:25:24 MarkDuplicates Tracking 753650 as yet unmatched pairs. 31467 records in RAM.
INFO 2026-06-04 21:25:25 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,529
INFO 2026-06-04 21:25:25 MarkDuplicates Tracking 754545 as yet unmatched pairs. 32362 records in RAM.
INFO 2026-06-04 21:25:26 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,928
INFO 2026-06-04 21:25:26 MarkDuplicates Tracking 752389 as yet unmatched pairs. 30205 records in RAM.
INFO 2026-06-04 21:25:27 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,478
INFO 2026-06-04 21:25:27 MarkDuplicates Tracking 763713 as yet unmatched pairs. 41524 records in RAM.
INFO 2026-06-04 21:25:29 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,029
INFO 2026-06-04 21:25:29 MarkDuplicates Tracking 764961 as yet unmatched pairs. 42768 records in RAM.
INFO 2026-06-04 21:25:30 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,662
INFO 2026-06-04 21:25:30 MarkDuplicates Tracking 761853 as yet unmatched pairs. 39654 records in RAM.
INFO 2026-06-04 21:25:32 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,112
INFO 2026-06-04 21:25:32 MarkDuplicates Tracking 759002 as yet unmatched pairs. 36789 records in RAM.
INFO 2026-06-04 21:25:33 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,583
INFO 2026-06-04 21:25:33 MarkDuplicates Tracking 747360 as yet unmatched pairs. 25145 records in RAM.
INFO 2026-06-04 21:25:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,184
INFO 2026-06-04 21:25:34 MarkDuplicates Tracking 749384 as yet unmatched pairs. 27167 records in RAM.
INFO 2026-06-04 21:25:36 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,581
INFO 2026-06-04 21:25:36 MarkDuplicates Tracking 746896 as yet unmatched pairs. 24662 records in RAM.
INFO 2026-06-04 21:25:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:101,017,614
INFO 2026-06-04 21:25:37 MarkDuplicates Tracking 747491 as yet unmatched pairs. 25253 records in RAM.
INFO 2026-06-04 21:26:32 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 55s. Last read position: chr7:101,050,516
INFO 2026-06-04 21:26:32 MarkDuplicates Tracking 744133 as yet unmatched pairs. 21870 records in RAM.
INFO 2026-06-04 21:26:34 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:103,297,533
INFO 2026-06-04 21:26:34 MarkDuplicates Tracking 741931 as yet unmatched pairs. 19638 records in RAM.
INFO 2026-06-04 21:26:36 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:107,935,599
INFO 2026-06-04 21:26:36 MarkDuplicates Tracking 741940 as yet unmatched pairs. 19595 records in RAM.
INFO 2026-06-04 21:26:38 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:116,771,961
INFO 2026-06-04 21:26:38 MarkDuplicates Tracking 740379 as yet unmatched pairs. 18012 records in RAM.
INFO 2026-06-04 21:26:40 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:127,704,904
INFO 2026-06-04 21:26:40 MarkDuplicates Tracking 740602 as yet unmatched pairs. 18197 records in RAM.
INFO 2026-06-04 21:26:41 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:129,405,889
INFO 2026-06-04 21:26:41 MarkDuplicates Tracking 735084 as yet unmatched pairs. 12648 records in RAM.
INFO 2026-06-04 21:26:43 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,422
INFO 2026-06-04 21:26:43 MarkDuplicates Tracking 734247 as yet unmatched pairs. 11767 records in RAM.
INFO 2026-06-04 21:26:45 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:140,794,363
INFO 2026-06-04 21:26:45 MarkDuplicates Tracking 730949 as yet unmatched pairs. 8442 records in RAM.
INFO 2026-06-04 21:26:46 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:144,185,724
INFO 2026-06-04 21:26:46 MarkDuplicates Tracking 728603 as yet unmatched pairs. 6079 records in RAM.
INFO 2026-06-04 21:26:48 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:150,116,762
INFO 2026-06-04 21:26:48 MarkDuplicates Tracking 727122 as yet unmatched pairs. 4570 records in RAM.
INFO 2026-06-04 21:26:49 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:151,238,402
INFO 2026-06-04 21:26:49 MarkDuplicates Tracking 725317 as yet unmatched pairs. 2738 records in RAM.
INFO 2026-06-04 21:26:51 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:158,741,849
INFO 2026-06-04 21:26:51 MarkDuplicates Tracking 723260 as yet unmatched pairs. 635 records in RAM.
INFO 2026-06-04 21:26:53 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,669
INFO 2026-06-04 21:26:53 MarkDuplicates Tracking 732636 as yet unmatched pairs. 57021 records in RAM.
INFO 2026-06-04 21:26:54 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:21,913,549
INFO 2026-06-04 21:26:54 MarkDuplicates Tracking 718860 as yet unmatched pairs. 43223 records in RAM.
INFO 2026-06-04 21:26:56 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:23,246,794
INFO 2026-06-04 21:26:56 MarkDuplicates Tracking 717052 as yet unmatched pairs. 41387 records in RAM.
INFO 2026-06-04 21:26:57 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:29,167,448
INFO 2026-06-04 21:26:57 MarkDuplicates Tracking 715241 as yet unmatched pairs. 39545 records in RAM.
INFO 2026-06-04 21:26:59 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,222
INFO 2026-06-04 21:26:59 MarkDuplicates Tracking 718831 as yet unmatched pairs. 43087 records in RAM.
INFO 2026-06-04 21:27:01 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:38,745,322
INFO 2026-06-04 21:27:01 MarkDuplicates Tracking 710934 as yet unmatched pairs. 35170 records in RAM.
INFO 2026-06-04 21:27:02 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:43,158,602
INFO 2026-06-04 21:27:02 MarkDuplicates Tracking 709134 as yet unmatched pairs. 33334 records in RAM.
INFO 2026-06-04 21:27:04 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:54,065,778
INFO 2026-06-04 21:27:04 MarkDuplicates Tracking 707492 as yet unmatched pairs. 31652 records in RAM.
INFO 2026-06-04 21:27:05 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:66,822,436
INFO 2026-06-04 21:27:05 MarkDuplicates Tracking 705214 as yet unmatched pairs. 29339 records in RAM.
INFO 2026-06-04 21:27:07 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,349
INFO 2026-06-04 21:27:07 MarkDuplicates Tracking 708030 as yet unmatched pairs. 32139 records in RAM.
INFO 2026-06-04 21:27:08 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:90,631,599
INFO 2026-06-04 21:27:08 MarkDuplicates Tracking 701795 as yet unmatched pairs. 25861 records in RAM.
INFO 2026-06-04 21:27:10 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:98,041,758
INFO 2026-06-04 21:27:10 MarkDuplicates Tracking 700128 as yet unmatched pairs. 24162 records in RAM.
INFO 2026-06-04 21:27:12 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr8:100,718,197
INFO 2026-06-04 21:27:12 MarkDuplicates Tracking 707277 as yet unmatched pairs. 31299 records in RAM.
INFO 2026-06-04 21:27:15 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr8:108,203,054
INFO 2026-06-04 21:27:15 MarkDuplicates Tracking 699754 as yet unmatched pairs. 23745 records in RAM.
INFO 2026-06-04 21:27:17 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr8:123,025,008
INFO 2026-06-04 21:27:17 MarkDuplicates Tracking 694310 as yet unmatched pairs. 18272 records in RAM.
INFO 2026-06-04 21:27:19 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:132,817,527
INFO 2026-06-04 21:27:19 MarkDuplicates Tracking 692170 as yet unmatched pairs. 16102 records in RAM.
INFO 2026-06-04 21:27:20 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,073
INFO 2026-06-04 21:27:20 MarkDuplicates Tracking 693030 as yet unmatched pairs. 16920 records in RAM.
INFO 2026-06-04 21:27:22 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,413
INFO 2026-06-04 21:27:22 MarkDuplicates Tracking 688324 as yet unmatched pairs. 12193 records in RAM.
INFO 2026-06-04 21:27:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,577
INFO 2026-06-04 21:27:23 MarkDuplicates Tracking 688884 as yet unmatched pairs. 12753 records in RAM.
INFO 2026-06-04 21:27:24 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,202
INFO 2026-06-04 21:27:24 MarkDuplicates Tracking 687904 as yet unmatched pairs. 11763 records in RAM.
INFO 2026-06-04 21:27:25 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,928
INFO 2026-06-04 21:27:25 MarkDuplicates Tracking 685839 as yet unmatched pairs. 9690 records in RAM.
INFO 2026-06-04 21:27:26 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,089
INFO 2026-06-04 21:27:26 MarkDuplicates Tracking 685294 as yet unmatched pairs. 9143 records in RAM.
INFO 2026-06-04 21:27:27 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,180
INFO 2026-06-04 21:27:27 MarkDuplicates Tracking 685472 as yet unmatched pairs. 9312 records in RAM.
INFO 2026-06-04 21:27:29 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,426
INFO 2026-06-04 21:27:29 MarkDuplicates Tracking 682934 as yet unmatched pairs. 6756 records in RAM.
INFO 2026-06-04 21:27:30 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:144,097,046
INFO 2026-06-04 21:27:30 MarkDuplicates Tracking 680216 as yet unmatched pairs. 4023 records in RAM.
INFO 2026-06-04 21:27:32 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:144,722,931
INFO 2026-06-04 21:27:32 MarkDuplicates Tracking 676680 as yet unmatched pairs. 458 records in RAM.
INFO 2026-06-04 21:27:33 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:7,799,502
INFO 2026-06-04 21:27:33 MarkDuplicates Tracking 676406 as yet unmatched pairs. 38526 records in RAM.
INFO 2026-06-04 21:27:35 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:26,910,200
INFO 2026-06-04 21:27:35 MarkDuplicates Tracking 673063 as yet unmatched pairs. 35119 records in RAM.
INFO 2026-06-04 21:27:36 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,565
INFO 2026-06-04 21:27:36 MarkDuplicates Tracking 673041 as yet unmatched pairs. 35069 records in RAM.
INFO 2026-06-04 21:27:38 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:35,841,610
INFO 2026-06-04 21:27:38 MarkDuplicates Tracking 669095 as yet unmatched pairs. 31107 records in RAM.
INFO 2026-06-04 21:27:39 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:71,704,772
INFO 2026-06-04 21:27:39 MarkDuplicates Tracking 668133 as yet unmatched pairs. 30103 records in RAM.
INFO 2026-06-04 21:27:41 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:83,974,576
INFO 2026-06-04 21:27:41 MarkDuplicates Tracking 668771 as yet unmatched pairs. 30712 records in RAM.
INFO 2026-06-04 21:27:42 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:92,719,375
INFO 2026-06-04 21:27:42 MarkDuplicates Tracking 663742 as yet unmatched pairs. 25653 records in RAM.
INFO 2026-06-04 21:27:44 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:98,056,773
INFO 2026-06-04 21:27:44 MarkDuplicates Tracking 661765 as yet unmatched pairs. 23646 records in RAM.
INFO 2026-06-04 21:27:46 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:105,521,437
INFO 2026-06-04 21:27:46 MarkDuplicates Tracking 659778 as yet unmatched pairs. 21640 records in RAM.
INFO 2026-06-04 21:27:47 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:112,333,487
INFO 2026-06-04 21:27:47 MarkDuplicates Tracking 657977 as yet unmatched pairs. 19821 records in RAM.
INFO 2026-06-04 21:27:48 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:121,162,088
INFO 2026-06-04 21:27:48 MarkDuplicates Tracking 656228 as yet unmatched pairs. 18054 records in RAM.
INFO 2026-06-04 21:27:51 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr9:125,236,841
INFO 2026-06-04 21:27:51 MarkDuplicates Tracking 658487 as yet unmatched pairs. 20278 records in RAM.
INFO 2026-06-04 21:27:53 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr9:128,122,377
INFO 2026-06-04 21:27:53 MarkDuplicates Tracking 652360 as yet unmatched pairs. 14124 records in RAM.
INFO 2026-06-04 21:27:55 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:128,640,689
INFO 2026-06-04 21:27:55 MarkDuplicates Tracking 650298 as yet unmatched pairs. 12052 records in RAM.
INFO 2026-06-04 21:27:57 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:130,872,192
INFO 2026-06-04 21:27:57 MarkDuplicates Tracking 648736 as yet unmatched pairs. 10473 records in RAM.
INFO 2026-06-04 21:27:58 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:133,332,564
INFO 2026-06-04 21:27:58 MarkDuplicates Tracking 646321 as yet unmatched pairs. 8028 records in RAM.
INFO 2026-06-04 21:28:00 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:134,817,781
INFO 2026-06-04 21:28:00 MarkDuplicates Tracking 645266 as yet unmatched pairs. 6950 records in RAM.
INFO 2026-06-04 21:28:01 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:136,518,661
INFO 2026-06-04 21:28:01 MarkDuplicates Tracking 642378 as yet unmatched pairs. 4049 records in RAM.
INFO 2026-06-04 21:28:03 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,846
INFO 2026-06-04 21:28:03 MarkDuplicates Tracking 645067 as yet unmatched pairs. 6718 records in RAM.
INFO 2026-06-04 21:28:05 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:3,781,935
INFO 2026-06-04 21:28:05 MarkDuplicates Tracking 638753 as yet unmatched pairs. 38255 records in RAM.
INFO 2026-06-04 21:28:06 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:13,319,155
INFO 2026-06-04 21:28:06 MarkDuplicates Tracking 636241 as yet unmatched pairs. 35715 records in RAM.
INFO 2026-06-04 21:28:08 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:24,584,992
INFO 2026-06-04 21:28:08 MarkDuplicates Tracking 634369 as yet unmatched pairs. 33812 records in RAM.
INFO 2026-06-04 21:28:10 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:32,015,521
INFO 2026-06-04 21:28:10 MarkDuplicates Tracking 634801 as yet unmatched pairs. 34226 records in RAM.
INFO 2026-06-04 21:28:11 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:32,048,534
INFO 2026-06-04 21:28:11 MarkDuplicates Tracking 634729 as yet unmatched pairs. 34139 records in RAM.
INFO 2026-06-04 21:28:13 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:43,387,320
INFO 2026-06-04 21:28:13 MarkDuplicates Tracking 629194 as yet unmatched pairs. 28586 records in RAM.
INFO 2026-06-04 21:28:15 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:51,698,157
INFO 2026-06-04 21:28:15 MarkDuplicates Tracking 627028 as yet unmatched pairs. 26399 records in RAM.
INFO 2026-06-04 21:28:17 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr10:68,786,615
INFO 2026-06-04 21:28:17 MarkDuplicates Tracking 625042 as yet unmatched pairs. 24386 records in RAM.
INFO 2026-06-04 21:28:18 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:73,251,830
INFO 2026-06-04 21:28:18 MarkDuplicates Tracking 623234 as yet unmatched pairs. 22563 records in RAM.
INFO 2026-06-04 21:28:20 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,232
INFO 2026-06-04 21:28:20 MarkDuplicates Tracking 623281 as yet unmatched pairs. 22591 records in RAM.
INFO 2026-06-04 21:28:21 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:88,826,090
INFO 2026-06-04 21:28:21 MarkDuplicates Tracking 619745 as yet unmatched pairs. 19036 records in RAM.
INFO 2026-06-04 21:28:23 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:95,318,407
INFO 2026-06-04 21:28:23 MarkDuplicates Tracking 617589 as yet unmatched pairs. 16847 records in RAM.
INFO 2026-06-04 21:28:24 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:98,422,429
INFO 2026-06-04 21:28:24 MarkDuplicates Tracking 615622 as yet unmatched pairs. 14853 records in RAM.
INFO 2026-06-04 21:28:26 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:102,375,356
INFO 2026-06-04 21:28:26 MarkDuplicates Tracking 613457 as yet unmatched pairs. 12673 records in RAM.
INFO 2026-06-04 21:28:28 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:110,575,394
INFO 2026-06-04 21:28:28 MarkDuplicates Tracking 612218 as yet unmatched pairs. 11404 records in RAM.
INFO 2026-06-04 21:28:29 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,637
INFO 2026-06-04 21:28:29 MarkDuplicates Tracking 609848 as yet unmatched pairs. 9006 records in RAM.
INFO 2026-06-04 21:28:31 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:122,578,715
INFO 2026-06-04 21:28:31 MarkDuplicates Tracking 613422 as yet unmatched pairs. 12573 records in RAM.
INFO 2026-06-04 21:28:32 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:122,592,432
INFO 2026-06-04 21:28:32 MarkDuplicates Tracking 618575 as yet unmatched pairs. 17712 records in RAM.
INFO 2026-06-04 21:28:33 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:122,602,058
INFO 2026-06-04 21:28:33 MarkDuplicates Tracking 613896 as yet unmatched pairs. 13021 records in RAM.
INFO 2026-06-04 21:28:35 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:122,613,187
INFO 2026-06-04 21:28:35 MarkDuplicates Tracking 607824 as yet unmatched pairs. 6944 records in RAM.
INFO 2026-06-04 21:28:36 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:122,640,222
INFO 2026-06-04 21:28:36 MarkDuplicates Tracking 607096 as yet unmatched pairs. 6208 records in RAM.
INFO 2026-06-04 21:28:38 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:130,175,001
INFO 2026-06-04 21:28:38 MarkDuplicates Tracking 602122 as yet unmatched pairs. 1210 records in RAM.
INFO 2026-06-04 21:28:40 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr11:320,615
INFO 2026-06-04 21:28:40 MarkDuplicates Tracking 607810 as yet unmatched pairs. 77927 records in RAM.
INFO 2026-06-04 21:28:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr11:824,118
INFO 2026-06-04 21:28:43 MarkDuplicates Tracking 598796 as yet unmatched pairs. 68893 records in RAM.
INFO 2026-06-04 21:28:45 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,313
INFO 2026-06-04 21:28:45 MarkDuplicates Tracking 596828 as yet unmatched pairs. 66909 records in RAM.
INFO 2026-06-04 21:28:46 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,904
INFO 2026-06-04 21:28:46 MarkDuplicates Tracking 596283 as yet unmatched pairs. 66361 records in RAM.
INFO 2026-06-04 21:28:47 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,487
INFO 2026-06-04 21:28:47 MarkDuplicates Tracking 595626 as yet unmatched pairs. 65703 records in RAM.
INFO 2026-06-04 21:28:49 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:1,950,899
INFO 2026-06-04 21:28:49 MarkDuplicates Tracking 592356 as yet unmatched pairs. 62416 records in RAM.
INFO 2026-06-04 21:28:51 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:6,567,698
INFO 2026-06-04 21:28:51 MarkDuplicates Tracking 589534 as yet unmatched pairs. 59578 records in RAM.
INFO 2026-06-04 21:28:53 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr11:9,527,556
INFO 2026-06-04 21:28:53 MarkDuplicates Tracking 587617 as yet unmatched pairs. 57641 records in RAM.
INFO 2026-06-04 21:28:56 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 3s. Last read position: chr11:13,708,062
INFO 2026-06-04 21:28:56 MarkDuplicates Tracking 585736 as yet unmatched pairs. 55740 records in RAM.
INFO 2026-06-04 21:28:57 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:18,403,788
INFO 2026-06-04 21:28:57 MarkDuplicates Tracking 586994 as yet unmatched pairs. 56958 records in RAM.
INFO 2026-06-04 21:28:59 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:33,660,903
INFO 2026-06-04 21:28:59 MarkDuplicates Tracking 581879 as yet unmatched pairs. 51825 records in RAM.
INFO 2026-06-04 21:29:00 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:44,619,123
INFO 2026-06-04 21:29:00 MarkDuplicates Tracking 580197 as yet unmatched pairs. 50122 records in RAM.
INFO 2026-06-04 21:29:02 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:46,678,938
INFO 2026-06-04 21:29:02 MarkDuplicates Tracking 578303 as yet unmatched pairs. 48219 records in RAM.
INFO 2026-06-04 21:29:03 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:57,309,982
INFO 2026-06-04 21:29:03 MarkDuplicates Tracking 576506 as yet unmatched pairs. 46398 records in RAM.
INFO 2026-06-04 21:29:05 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:58,611,603
INFO 2026-06-04 21:29:05 MarkDuplicates Tracking 574468 as yet unmatched pairs. 44336 records in RAM.
INFO 2026-06-04 21:29:07 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:61,329,515
INFO 2026-06-04 21:29:07 MarkDuplicates Tracking 572952 as yet unmatched pairs. 42800 records in RAM.
INFO 2026-06-04 21:29:08 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,456
INFO 2026-06-04 21:29:08 MarkDuplicates Tracking 571107 as yet unmatched pairs. 40934 records in RAM.
INFO 2026-06-04 21:29:10 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,826
INFO 2026-06-04 21:29:10 MarkDuplicates Tracking 570114 as yet unmatched pairs. 39932 records in RAM.
INFO 2026-06-04 21:29:12 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:62,663,095
INFO 2026-06-04 21:29:12 MarkDuplicates Tracking 568063 as yet unmatched pairs. 37861 records in RAM.
INFO 2026-06-04 21:29:14 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr11:64,195,717
INFO 2026-06-04 21:29:14 MarkDuplicates Tracking 566014 as yet unmatched pairs. 35799 records in RAM.
INFO 2026-06-04 21:29:16 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:64,809,675
INFO 2026-06-04 21:29:16 MarkDuplicates Tracking 562773 as yet unmatched pairs. 32547 records in RAM.
INFO 2026-06-04 21:29:17 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:65,537,065
INFO 2026-06-04 21:29:17 MarkDuplicates Tracking 560610 as yet unmatched pairs. 30329 records in RAM.
INFO 2026-06-04 21:29:19 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,420
INFO 2026-06-04 21:29:19 MarkDuplicates Tracking 560992 as yet unmatched pairs. 30691 records in RAM.
INFO 2026-06-04 21:29:20 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:66,482,236
INFO 2026-06-04 21:29:20 MarkDuplicates Tracking 556245 as yet unmatched pairs. 25934 records in RAM.
INFO 2026-06-04 21:29:22 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,436,258
INFO 2026-06-04 21:29:22 MarkDuplicates Tracking 553872 as yet unmatched pairs. 23545 records in RAM.
INFO 2026-06-04 21:29:23 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:68,386,535
INFO 2026-06-04 21:29:23 MarkDuplicates Tracking 552180 as yet unmatched pairs. 21837 records in RAM.
INFO 2026-06-04 21:29:25 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:71,791,730
INFO 2026-06-04 21:29:25 MarkDuplicates Tracking 549590 as yet unmatched pairs. 19237 records in RAM.
INFO 2026-06-04 21:29:26 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:74,074,411
INFO 2026-06-04 21:29:26 MarkDuplicates Tracking 547661 as yet unmatched pairs. 17289 records in RAM.
INFO 2026-06-04 21:29:28 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:77,123,763
INFO 2026-06-04 21:29:28 MarkDuplicates Tracking 546294 as yet unmatched pairs. 15908 records in RAM.
INFO 2026-06-04 21:29:30 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:88,294,240
INFO 2026-06-04 21:29:30 MarkDuplicates Tracking 544891 as yet unmatched pairs. 14454 records in RAM.
INFO 2026-06-04 21:29:32 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr11:102,350,616
INFO 2026-06-04 21:29:32 MarkDuplicates Tracking 542127 as yet unmatched pairs. 11658 records in RAM.
INFO 2026-06-04 21:29:34 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:113,812,477
INFO 2026-06-04 21:29:34 MarkDuplicates Tracking 540243 as yet unmatched pairs. 9754 records in RAM.
INFO 2026-06-04 21:29:36 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:118,491,230
INFO 2026-06-04 21:29:36 MarkDuplicates Tracking 538610 as yet unmatched pairs. 8109 records in RAM.
INFO 2026-06-04 21:29:37 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:119,132,535
INFO 2026-06-04 21:29:37 MarkDuplicates Tracking 536324 as yet unmatched pairs. 5801 records in RAM.
INFO 2026-06-04 21:29:39 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,715
INFO 2026-06-04 21:29:39 MarkDuplicates Tracking 545750 as yet unmatched pairs. 15215 records in RAM.
INFO 2026-06-04 21:29:41 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:128,970,340
INFO 2026-06-04 21:29:41 MarkDuplicates Tracking 534450 as yet unmatched pairs. 3907 records in RAM.
INFO 2026-06-04 21:29:42 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:535,183
INFO 2026-06-04 21:29:42 MarkDuplicates Tracking 530727 as yet unmatched pairs. 55541 records in RAM.
INFO 2026-06-04 21:29:44 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,019,073
INFO 2026-06-04 21:29:44 MarkDuplicates Tracking 529070 as yet unmatched pairs. 53860 records in RAM.
INFO 2026-06-04 21:29:46 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,581,162
INFO 2026-06-04 21:29:46 MarkDuplicates Tracking 527081 as yet unmatched pairs. 51857 records in RAM.
INFO 2026-06-04 21:29:47 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:6,945,842
INFO 2026-06-04 21:29:47 MarkDuplicates Tracking 524852 as yet unmatched pairs. 49607 records in RAM.
INFO 2026-06-04 21:29:49 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,406
INFO 2026-06-04 21:29:49 MarkDuplicates Tracking 524516 as yet unmatched pairs. 49265 records in RAM.
INFO 2026-06-04 21:29:52 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 3s. Last read position: chr12:12,718,867
INFO 2026-06-04 21:29:52 MarkDuplicates Tracking 521385 as yet unmatched pairs. 46090 records in RAM.
INFO 2026-06-04 21:29:54 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:16,363,924
INFO 2026-06-04 21:29:54 MarkDuplicates Tracking 529402 as yet unmatched pairs. 54084 records in RAM.
INFO 2026-06-04 21:29:55 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:29,270,515
INFO 2026-06-04 21:29:55 MarkDuplicates Tracking 517417 as yet unmatched pairs. 42068 records in RAM.
INFO 2026-06-04 21:29:57 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:45,926,766
INFO 2026-06-04 21:29:57 MarkDuplicates Tracking 515408 as yet unmatched pairs. 40031 records in RAM.
INFO 2026-06-04 21:29:58 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:49,043,945
INFO 2026-06-04 21:29:58 MarkDuplicates Tracking 513787 as yet unmatched pairs. 38391 records in RAM.
INFO 2026-06-04 21:30:00 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,273,021
INFO 2026-06-04 21:30:00 MarkDuplicates Tracking 513586 as yet unmatched pairs. 38185 records in RAM.
INFO 2026-06-04 21:30:01 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:51,379,622
INFO 2026-06-04 21:30:01 MarkDuplicates Tracking 510017 as yet unmatched pairs. 34593 records in RAM.
INFO 2026-06-04 21:30:03 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,295,570
INFO 2026-06-04 21:30:03 MarkDuplicates Tracking 509824 as yet unmatched pairs. 34386 records in RAM.
INFO 2026-06-04 21:30:04 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,247
INFO 2026-06-04 21:30:04 MarkDuplicates Tracking 508826 as yet unmatched pairs. 33363 records in RAM.
INFO 2026-06-04 21:30:06 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,093,859
INFO 2026-06-04 21:30:06 MarkDuplicates Tracking 504757 as yet unmatched pairs. 29277 records in RAM.
INFO 2026-06-04 21:30:07 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,588,322
INFO 2026-06-04 21:30:07 MarkDuplicates Tracking 502655 as yet unmatched pairs. 27159 records in RAM.
INFO 2026-06-04 21:30:09 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,430
INFO 2026-06-04 21:30:09 MarkDuplicates Tracking 503625 as yet unmatched pairs. 28112 records in RAM.
INFO 2026-06-04 21:30:10 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:57,212,130
INFO 2026-06-04 21:30:10 MarkDuplicates Tracking 499431 as yet unmatched pairs. 23902 records in RAM.
INFO 2026-06-04 21:30:12 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:63,805,334
INFO 2026-06-04 21:30:12 MarkDuplicates Tracking 496770 as yet unmatched pairs. 21218 records in RAM.
INFO 2026-06-04 21:30:15 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr12:69,353,236
INFO 2026-06-04 21:30:15 MarkDuplicates Tracking 499059 as yet unmatched pairs. 23494 records in RAM.
INFO 2026-06-04 21:30:17 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr12:82,895,874
INFO 2026-06-04 21:30:17 MarkDuplicates Tracking 493074 as yet unmatched pairs. 17491 records in RAM.
INFO 2026-06-04 21:30:19 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:95,030,454
INFO 2026-06-04 21:30:19 MarkDuplicates Tracking 491470 as yet unmatched pairs. 15877 records in RAM.
INFO 2026-06-04 21:30:20 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:103,937,696
INFO 2026-06-04 21:30:20 MarkDuplicates Tracking 490563 as yet unmatched pairs. 14962 records in RAM.
INFO 2026-06-04 21:30:22 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:108,701,161
INFO 2026-06-04 21:30:22 MarkDuplicates Tracking 488425 as yet unmatched pairs. 12807 records in RAM.
INFO 2026-06-04 21:30:23 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:112,013,591
INFO 2026-06-04 21:30:23 MarkDuplicates Tracking 486655 as yet unmatched pairs. 11022 records in RAM.
INFO 2026-06-04 21:30:25 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:118,034,994
INFO 2026-06-04 21:30:25 MarkDuplicates Tracking 484512 as yet unmatched pairs. 8870 records in RAM.
INFO 2026-06-04 21:30:26 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:120,687,456
INFO 2026-06-04 21:30:26 MarkDuplicates Tracking 482767 as yet unmatched pairs. 7092 records in RAM.
INFO 2026-06-04 21:30:28 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:122,982,570
INFO 2026-06-04 21:30:28 MarkDuplicates Tracking 480573 as yet unmatched pairs. 4865 records in RAM.
INFO 2026-06-04 21:30:29 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:125,129,395
INFO 2026-06-04 21:30:29 MarkDuplicates Tracking 477735 as yet unmatched pairs. 2014 records in RAM.
INFO 2026-06-04 21:30:31 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr13:19,647,054
INFO 2026-06-04 21:30:31 MarkDuplicates Tracking 475914 as yet unmatched pairs. 23644 records in RAM.
INFO 2026-06-04 21:30:32 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr13:24,297,607
INFO 2026-06-04 21:30:32 MarkDuplicates Tracking 474028 as yet unmatched pairs. 21730 records in RAM.
INFO 2026-06-04 21:30:34 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr13:27,968,909
INFO 2026-06-04 21:30:34 MarkDuplicates Tracking 473322 as yet unmatched pairs. 21016 records in RAM.
INFO 2026-06-04 21:30:35 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr13:36,985,659
INFO 2026-06-04 21:30:35 MarkDuplicates Tracking 470617 as yet unmatched pairs. 18289 records in RAM.
INFO 2026-06-04 21:30:37 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr13:42,301,728
INFO 2026-06-04 21:30:37 MarkDuplicates Tracking 469069 as yet unmatched pairs. 16731 records in RAM.
INFO 2026-06-04 21:30:38 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr13:46,350,113
INFO 2026-06-04 21:30:38 MarkDuplicates Tracking 466677 as yet unmatched pairs. 14321 records in RAM.
INFO 2026-06-04 21:30:41 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr13:52,377,391
INFO 2026-06-04 21:30:41 MarkDuplicates Tracking 464413 as yet unmatched pairs. 12028 records in RAM.
INFO 2026-06-04 21:30:43 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr13:60,529,184
INFO 2026-06-04 21:30:43 MarkDuplicates Tracking 462852 as yet unmatched pairs. 10453 records in RAM.
INFO 2026-06-04 21:30:45 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr13:77,125,349
INFO 2026-06-04 21:30:45 MarkDuplicates Tracking 461142 as yet unmatched pairs. 8728 records in RAM.
INFO 2026-06-04 21:30:47 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:99,215,684
INFO 2026-06-04 21:30:47 MarkDuplicates Tracking 459852 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-04 21:30:48 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:110,169,676
INFO 2026-06-04 21:30:48 MarkDuplicates Tracking 457775 as yet unmatched pairs. 5315 records in RAM.
INFO 2026-06-04 21:30:50 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr13:110,667,404
INFO 2026-06-04 21:30:50 MarkDuplicates Tracking 455508 as yet unmatched pairs. 3035 records in RAM.
INFO 2026-06-04 21:30:51 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:114,325,272
INFO 2026-06-04 21:30:51 MarkDuplicates Tracking 453000 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-04 21:30:53 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:21,408,749
INFO 2026-06-04 21:30:53 MarkDuplicates Tracking 450757 as yet unmatched pairs. 35143 records in RAM.
INFO 2026-06-04 21:30:55 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:23,095,540
INFO 2026-06-04 21:30:55 MarkDuplicates Tracking 448704 as yet unmatched pairs. 33077 records in RAM.
INFO 2026-06-04 21:30:56 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:24,270,418
INFO 2026-06-04 21:30:56 MarkDuplicates Tracking 446844 as yet unmatched pairs. 31207 records in RAM.
INFO 2026-06-04 21:30:58 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr14:35,078,953
INFO 2026-06-04 21:30:58 MarkDuplicates Tracking 445053 as yet unmatched pairs. 29394 records in RAM.
INFO 2026-06-04 21:30:59 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:49,894,094
INFO 2026-06-04 21:30:59 MarkDuplicates Tracking 444995 as yet unmatched pairs. 29246 records in RAM.
INFO 2026-06-04 21:31:01 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr14:55,151,817
INFO 2026-06-04 21:31:01 MarkDuplicates Tracking 441179 as yet unmatched pairs. 25422 records in RAM.
INFO 2026-06-04 21:31:02 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:64,027,556
INFO 2026-06-04 21:31:02 MarkDuplicates Tracking 439272 as yet unmatched pairs. 23494 records in RAM.
INFO 2026-06-04 21:31:04 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:68,874,851
INFO 2026-06-04 21:31:04 MarkDuplicates Tracking 437902 as yet unmatched pairs. 22104 records in RAM.
INFO 2026-06-04 21:31:05 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:73,569,491
INFO 2026-06-04 21:31:05 MarkDuplicates Tracking 435761 as yet unmatched pairs. 19937 records in RAM.
INFO 2026-06-04 21:31:08 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr14:75,469,289
INFO 2026-06-04 21:31:08 MarkDuplicates Tracking 433413 as yet unmatched pairs. 17571 records in RAM.
INFO 2026-06-04 21:31:10 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr14:91,313,594
INFO 2026-06-04 21:31:10 MarkDuplicates Tracking 431375 as yet unmatched pairs. 15512 records in RAM.
INFO 2026-06-04 21:31:11 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:94,619,454
INFO 2026-06-04 21:31:11 MarkDuplicates Tracking 429353 as yet unmatched pairs. 13469 records in RAM.
INFO 2026-06-04 21:31:13 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:102,000,972
INFO 2026-06-04 21:31:13 MarkDuplicates Tracking 427819 as yet unmatched pairs. 11907 records in RAM.
INFO 2026-06-04 21:31:14 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:103,133,776
INFO 2026-06-04 21:31:14 MarkDuplicates Tracking 425486 as yet unmatched pairs. 9555 records in RAM.
INFO 2026-06-04 21:31:16 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,441
INFO 2026-06-04 21:31:16 MarkDuplicates Tracking 425234 as yet unmatched pairs. 9284 records in RAM.
INFO 2026-06-04 21:31:17 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,772
INFO 2026-06-04 21:31:17 MarkDuplicates Tracking 424653 as yet unmatched pairs. 8698 records in RAM.
INFO 2026-06-04 21:31:19 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,894
INFO 2026-06-04 21:31:19 MarkDuplicates Tracking 430149 as yet unmatched pairs. 14186 records in RAM.
INFO 2026-06-04 21:31:20 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,830
INFO 2026-06-04 21:31:20 MarkDuplicates Tracking 433061 as yet unmatched pairs. 17081 records in RAM.
INFO 2026-06-04 21:31:21 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,777
INFO 2026-06-04 21:31:21 MarkDuplicates Tracking 427977 as yet unmatched pairs. 11987 records in RAM.
INFO 2026-06-04 21:31:23 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:20,458,260
INFO 2026-06-04 21:31:23 MarkDuplicates Tracking 416039 as yet unmatched pairs. 33025 records in RAM.
INFO 2026-06-04 21:31:25 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:32,730,979
INFO 2026-06-04 21:31:25 MarkDuplicates Tracking 418269 as yet unmatched pairs. 35246 records in RAM.
INFO 2026-06-04 21:31:26 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:39,587,422
INFO 2026-06-04 21:31:26 MarkDuplicates Tracking 413517 as yet unmatched pairs. 30484 records in RAM.
INFO 2026-06-04 21:31:28 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:41,523,271
INFO 2026-06-04 21:31:28 MarkDuplicates Tracking 410631 as yet unmatched pairs. 27591 records in RAM.
INFO 2026-06-04 21:31:30 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr15:43,525,905
INFO 2026-06-04 21:31:30 MarkDuplicates Tracking 408637 as yet unmatched pairs. 25591 records in RAM.
INFO 2026-06-04 21:31:32 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:44,289,159
INFO 2026-06-04 21:31:32 MarkDuplicates Tracking 407490 as yet unmatched pairs. 24435 records in RAM.
INFO 2026-06-04 21:31:33 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr15:48,495,175
INFO 2026-06-04 21:31:33 MarkDuplicates Tracking 405376 as yet unmatched pairs. 22301 records in RAM.
INFO 2026-06-04 21:31:35 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:56,701,021
INFO 2026-06-04 21:31:35 MarkDuplicates Tracking 403323 as yet unmatched pairs. 20231 records in RAM.
INFO 2026-06-04 21:31:36 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:60,352,453
INFO 2026-06-04 21:31:36 MarkDuplicates Tracking 406301 as yet unmatched pairs. 23192 records in RAM.
INFO 2026-06-04 21:31:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:63,755,237
INFO 2026-06-04 21:31:38 MarkDuplicates Tracking 399347 as yet unmatched pairs. 16231 records in RAM.
INFO 2026-06-04 21:31:39 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:66,501,466
INFO 2026-06-04 21:31:39 MarkDuplicates Tracking 401875 as yet unmatched pairs. 18737 records in RAM.
INFO 2026-06-04 21:31:41 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,127
INFO 2026-06-04 21:31:41 MarkDuplicates Tracking 396327 as yet unmatched pairs. 13167 records in RAM.
INFO 2026-06-04 21:31:42 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:74,176,059
INFO 2026-06-04 21:31:42 MarkDuplicates Tracking 393661 as yet unmatched pairs. 10490 records in RAM.
INFO 2026-06-04 21:31:44 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,124
INFO 2026-06-04 21:31:44 MarkDuplicates Tracking 393852 as yet unmatched pairs. 10673 records in RAM.
INFO 2026-06-04 21:31:45 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,820
INFO 2026-06-04 21:31:45 MarkDuplicates Tracking 393990 as yet unmatched pairs. 10799 records in RAM.
INFO 2026-06-04 21:31:47 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:89,319,054
INFO 2026-06-04 21:31:47 MarkDuplicates Tracking 387770 as yet unmatched pairs. 4568 records in RAM.
INFO 2026-06-04 21:31:49 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:90,878,172
INFO 2026-06-04 21:31:49 MarkDuplicates Tracking 386075 as yet unmatched pairs. 2868 records in RAM.
INFO 2026-06-04 21:31:50 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:101,322,593
INFO 2026-06-04 21:31:50 MarkDuplicates Tracking 383393 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-04 21:31:53 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 3s. Last read position: chr16:672,764
INFO 2026-06-04 21:31:53 MarkDuplicates Tracking 382019 as yet unmatched pairs. 58882 records in RAM.
INFO 2026-06-04 21:31:55 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:1,772,321
INFO 2026-06-04 21:31:55 MarkDuplicates Tracking 379680 as yet unmatched pairs. 56540 records in RAM.
INFO 2026-06-04 21:31:56 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,213,684
INFO 2026-06-04 21:31:56 MarkDuplicates Tracking 376769 as yet unmatched pairs. 53606 records in RAM.
INFO 2026-06-04 21:31:58 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,547
INFO 2026-06-04 21:31:58 MarkDuplicates Tracking 375872 as yet unmatched pairs. 52706 records in RAM.
INFO 2026-06-04 21:31:59 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:3,284,040
INFO 2026-06-04 21:31:59 MarkDuplicates Tracking 373059 as yet unmatched pairs. 49889 records in RAM.
INFO 2026-06-04 21:32:01 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:4,797,942
INFO 2026-06-04 21:32:01 MarkDuplicates Tracking 370765 as yet unmatched pairs. 47589 records in RAM.
INFO 2026-06-04 21:32:02 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:11,873,098
INFO 2026-06-04 21:32:02 MarkDuplicates Tracking 370402 as yet unmatched pairs. 47211 records in RAM.
INFO 2026-06-04 21:32:04 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:14,997,630
INFO 2026-06-04 21:32:04 MarkDuplicates Tracking 368341 as yet unmatched pairs. 45140 records in RAM.
INFO 2026-06-04 21:32:05 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:15,763,835
INFO 2026-06-04 21:32:05 MarkDuplicates Tracking 367432 as yet unmatched pairs. 44220 records in RAM.
INFO 2026-06-04 21:32:06 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,076
INFO 2026-06-04 21:32:06 MarkDuplicates Tracking 364760 as yet unmatched pairs. 41545 records in RAM.
INFO 2026-06-04 21:32:08 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:18,794,652
INFO 2026-06-04 21:32:08 MarkDuplicates Tracking 366896 as yet unmatched pairs. 43672 records in RAM.
INFO 2026-06-04 21:32:09 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:21,406,817
INFO 2026-06-04 21:32:09 MarkDuplicates Tracking 362892 as yet unmatched pairs. 39664 records in RAM.
INFO 2026-06-04 21:32:10 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,788
INFO 2026-06-04 21:32:10 MarkDuplicates Tracking 361386 as yet unmatched pairs. 38145 records in RAM.
INFO 2026-06-04 21:32:12 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:27,362,633
INFO 2026-06-04 21:32:12 MarkDuplicates Tracking 360266 as yet unmatched pairs. 37020 records in RAM.
INFO 2026-06-04 21:32:14 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:28,735,295
INFO 2026-06-04 21:32:14 MarkDuplicates Tracking 358495 as yet unmatched pairs. 35244 records in RAM.
INFO 2026-06-04 21:32:16 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,644
INFO 2026-06-04 21:32:16 MarkDuplicates Tracking 357293 as yet unmatched pairs. 34029 records in RAM.
INFO 2026-06-04 21:32:17 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,979,278
INFO 2026-06-04 21:32:17 MarkDuplicates Tracking 354826 as yet unmatched pairs. 31541 records in RAM.
INFO 2026-06-04 21:32:19 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,726
INFO 2026-06-04 21:32:19 MarkDuplicates Tracking 352839 as yet unmatched pairs. 29551 records in RAM.
INFO 2026-06-04 21:32:20 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,733,601
INFO 2026-06-04 21:32:20 MarkDuplicates Tracking 351105 as yet unmatched pairs. 27809 records in RAM.
INFO 2026-06-04 21:32:21 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,208
INFO 2026-06-04 21:32:21 MarkDuplicates Tracking 351263 as yet unmatched pairs. 27946 records in RAM.
INFO 2026-06-04 21:32:23 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:46,971,508
INFO 2026-06-04 21:32:23 MarkDuplicates Tracking 347469 as yet unmatched pairs. 24142 records in RAM.
INFO 2026-06-04 21:32:25 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:55,484,052
INFO 2026-06-04 21:32:25 MarkDuplicates Tracking 348528 as yet unmatched pairs. 25195 records in RAM.
INFO 2026-06-04 21:32:26 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:57,650,320
INFO 2026-06-04 21:32:26 MarkDuplicates Tracking 345496 as yet unmatched pairs. 22152 records in RAM.
INFO 2026-06-04 21:32:28 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:66,608,369
INFO 2026-06-04 21:32:28 MarkDuplicates Tracking 341728 as yet unmatched pairs. 18378 records in RAM.
INFO 2026-06-04 21:32:30 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:67,439,128
INFO 2026-06-04 21:32:30 MarkDuplicates Tracking 339722 as yet unmatched pairs. 16366 records in RAM.
INFO 2026-06-04 21:32:32 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:68,808,426
INFO 2026-06-04 21:32:32 MarkDuplicates Tracking 338358 as yet unmatched pairs. 14991 records in RAM.
INFO 2026-06-04 21:32:33 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:70,252,506
INFO 2026-06-04 21:32:33 MarkDuplicates Tracking 335224 as yet unmatched pairs. 11851 records in RAM.
INFO 2026-06-04 21:32:34 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:72,795,535
INFO 2026-06-04 21:32:34 MarkDuplicates Tracking 333404 as yet unmatched pairs. 10012 records in RAM.
INFO 2026-06-04 21:32:36 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:79,598,956
INFO 2026-06-04 21:32:36 MarkDuplicates Tracking 331722 as yet unmatched pairs. 8324 records in RAM.
INFO 2026-06-04 21:32:37 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:85,661,441
INFO 2026-06-04 21:32:37 MarkDuplicates Tracking 329612 as yet unmatched pairs. 6196 records in RAM.
INFO 2026-06-04 21:32:39 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,546
INFO 2026-06-04 21:32:39 MarkDuplicates Tracking 335239 as yet unmatched pairs. 11817 records in RAM.
INFO 2026-06-04 21:32:41 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr16:89,561,583
INFO 2026-06-04 21:32:41 MarkDuplicates Tracking 334281 as yet unmatched pairs. 10845 records in RAM.
INFO 2026-06-04 21:32:44 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr17:1,100,672
INFO 2026-06-04 21:32:44 MarkDuplicates Tracking 323697 as yet unmatched pairs. 101140 records in RAM.
INFO 2026-06-04 21:32:46 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:1,658,692
INFO 2026-06-04 21:32:46 MarkDuplicates Tracking 321743 as yet unmatched pairs. 99182 records in RAM.
INFO 2026-06-04 21:32:47 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:3,647,454
INFO 2026-06-04 21:32:47 MarkDuplicates Tracking 318515 as yet unmatched pairs. 95949 records in RAM.
INFO 2026-06-04 21:32:49 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:4,895,191
INFO 2026-06-04 21:32:49 MarkDuplicates Tracking 317094 as yet unmatched pairs. 94523 records in RAM.
INFO 2026-06-04 21:32:50 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,638
INFO 2026-06-04 21:32:50 MarkDuplicates Tracking 315400 as yet unmatched pairs. 92825 records in RAM.
INFO 2026-06-04 21:32:52 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,295
INFO 2026-06-04 21:32:52 MarkDuplicates Tracking 312771 as yet unmatched pairs. 90194 records in RAM.
INFO 2026-06-04 21:32:53 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,911
INFO 2026-06-04 21:32:53 MarkDuplicates Tracking 313848 as yet unmatched pairs. 91264 records in RAM.
INFO 2026-06-04 21:32:55 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:8,142,441
INFO 2026-06-04 21:32:55 MarkDuplicates Tracking 308981 as yet unmatched pairs. 86394 records in RAM.
INFO 2026-06-04 21:32:56 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:16,091,995
INFO 2026-06-04 21:32:56 MarkDuplicates Tracking 307550 as yet unmatched pairs. 84954 records in RAM.
INFO 2026-06-04 21:32:58 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:17,907,499
INFO 2026-06-04 21:32:58 MarkDuplicates Tracking 304837 as yet unmatched pairs. 82235 records in RAM.
INFO 2026-06-04 21:32:59 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:27,778,971
INFO 2026-06-04 21:32:59 MarkDuplicates Tracking 303087 as yet unmatched pairs. 80474 records in RAM.
INFO 2026-06-04 21:33:01 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:29,571,605
INFO 2026-06-04 21:33:01 MarkDuplicates Tracking 301098 as yet unmatched pairs. 78481 records in RAM.
INFO 2026-06-04 21:33:03 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:34,255,338
INFO 2026-06-04 21:33:03 MarkDuplicates Tracking 299610 as yet unmatched pairs. 76984 records in RAM.
INFO 2026-06-04 21:33:05 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:36,989,271
INFO 2026-06-04 21:33:05 MarkDuplicates Tracking 297440 as yet unmatched pairs. 74802 records in RAM.
INFO 2026-06-04 21:33:07 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr17:39,202,333
INFO 2026-06-04 21:33:07 MarkDuplicates Tracking 299257 as yet unmatched pairs. 76616 records in RAM.
INFO 2026-06-04 21:33:08 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,436
INFO 2026-06-04 21:33:08 MarkDuplicates Tracking 295100 as yet unmatched pairs. 72447 records in RAM.
INFO 2026-06-04 21:33:10 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,381
INFO 2026-06-04 21:33:10 MarkDuplicates Tracking 291985 as yet unmatched pairs. 69326 records in RAM.
INFO 2026-06-04 21:33:11 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,578
INFO 2026-06-04 21:33:11 MarkDuplicates Tracking 289709 as yet unmatched pairs. 67043 records in RAM.
INFO 2026-06-04 21:33:13 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:43,545,311
INFO 2026-06-04 21:33:13 MarkDuplicates Tracking 288604 as yet unmatched pairs. 65933 records in RAM.
INFO 2026-06-04 21:33:14 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:45,453,760
INFO 2026-06-04 21:33:14 MarkDuplicates Tracking 285894 as yet unmatched pairs. 63209 records in RAM.
INFO 2026-06-04 21:33:16 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:48,059,469
INFO 2026-06-04 21:33:16 MarkDuplicates Tracking 284189 as yet unmatched pairs. 61498 records in RAM.
INFO 2026-06-04 21:33:18 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,811
INFO 2026-06-04 21:33:18 MarkDuplicates Tracking 297086 as yet unmatched pairs. 74380 records in RAM.
INFO 2026-06-04 21:33:19 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,735
INFO 2026-06-04 21:33:19 MarkDuplicates Tracking 318731 as yet unmatched pairs. 96017 records in RAM.
INFO 2026-06-04 21:35:21 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 122s. Last read position: chr17:50,187,111
INFO 2026-06-04 21:35:21 MarkDuplicates Tracking 341294 as yet unmatched pairs. 118577 records in RAM.
INFO 2026-06-04 21:35:23 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,102
INFO 2026-06-04 21:35:23 MarkDuplicates Tracking 378657 as yet unmatched pairs. 155936 records in RAM.
INFO 2026-06-04 21:35:25 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,935
INFO 2026-06-04 21:35:25 MarkDuplicates Tracking 345486 as yet unmatched pairs. 122762 records in RAM.
INFO 2026-06-04 21:35:27 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,478
INFO 2026-06-04 21:35:27 MarkDuplicates Tracking 326580 as yet unmatched pairs. 103848 records in RAM.
INFO 2026-06-04 21:35:29 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,038
INFO 2026-06-04 21:35:29 MarkDuplicates Tracking 347564 as yet unmatched pairs. 124816 records in RAM.
INFO 2026-06-04 21:35:30 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,910
INFO 2026-06-04 21:35:30 MarkDuplicates Tracking 323421 as yet unmatched pairs. 100665 records in RAM.
INFO 2026-06-04 21:35:32 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,649
INFO 2026-06-04 21:35:32 MarkDuplicates Tracking 309916 as yet unmatched pairs. 87156 records in RAM.
INFO 2026-06-04 21:35:34 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,961
INFO 2026-06-04 21:35:34 MarkDuplicates Tracking 343239 as yet unmatched pairs. 120477 records in RAM.
INFO 2026-06-04 21:35:35 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,376
INFO 2026-06-04 21:35:35 MarkDuplicates Tracking 356888 as yet unmatched pairs. 134119 records in RAM.
INFO 2026-06-04 21:35:37 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,794
INFO 2026-06-04 21:35:37 MarkDuplicates Tracking 342749 as yet unmatched pairs. 119979 records in RAM.
INFO 2026-06-04 21:35:39 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,598
INFO 2026-06-04 21:35:39 MarkDuplicates Tracking 333270 as yet unmatched pairs. 110495 records in RAM.
INFO 2026-06-04 21:35:40 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,313
INFO 2026-06-04 21:35:40 MarkDuplicates Tracking 360111 as yet unmatched pairs. 137329 records in RAM.
INFO 2026-06-04 21:35:42 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,049
INFO 2026-06-04 21:35:42 MarkDuplicates Tracking 367721 as yet unmatched pairs. 144923 records in RAM.
INFO 2026-06-04 21:35:44 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,456
INFO 2026-06-04 21:35:44 MarkDuplicates Tracking 304779 as yet unmatched pairs. 81975 records in RAM.
INFO 2026-06-04 21:35:46 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,753
INFO 2026-06-04 21:35:46 MarkDuplicates Tracking 281432 as yet unmatched pairs. 58626 records in RAM.
INFO 2026-06-04 21:35:48 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,675,907
INFO 2026-06-04 21:35:48 MarkDuplicates Tracking 246637 as yet unmatched pairs. 23830 records in RAM.
INFO 2026-06-04 21:35:50 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:58,521,553
INFO 2026-06-04 21:35:50 MarkDuplicates Tracking 244402 as yet unmatched pairs. 21589 records in RAM.
INFO 2026-06-04 21:35:52 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,763
INFO 2026-06-04 21:35:52 MarkDuplicates Tracking 248399 as yet unmatched pairs. 25583 records in RAM.
INFO 2026-06-04 21:35:54 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:63,693,635
INFO 2026-06-04 21:35:54 MarkDuplicates Tracking 240561 as yet unmatched pairs. 17738 records in RAM.
INFO 2026-06-04 21:35:56 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:67,904,711
INFO 2026-06-04 21:35:56 MarkDuplicates Tracking 238789 as yet unmatched pairs. 15956 records in RAM.
INFO 2026-06-04 21:35:58 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr17:74,864,539
INFO 2026-06-04 21:35:58 MarkDuplicates Tracking 236645 as yet unmatched pairs. 13806 records in RAM.
INFO 2026-06-04 21:35:59 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:75,756,463
INFO 2026-06-04 21:35:59 MarkDuplicates Tracking 235131 as yet unmatched pairs. 12285 records in RAM.
INFO 2026-06-04 21:36:01 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,857
INFO 2026-06-04 21:36:01 MarkDuplicates Tracking 233092 as yet unmatched pairs. 10242 records in RAM.
INFO 2026-06-04 21:36:02 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,433
INFO 2026-06-04 21:36:02 MarkDuplicates Tracking 230297 as yet unmatched pairs. 7442 records in RAM.
INFO 2026-06-04 21:36:04 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,744
INFO 2026-06-04 21:36:04 MarkDuplicates Tracking 231600 as yet unmatched pairs. 8742 records in RAM.
INFO 2026-06-04 21:36:05 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr17:81,869,775
INFO 2026-06-04 21:36:05 MarkDuplicates Tracking 227289 as yet unmatched pairs. 4422 records in RAM.
INFO 2026-06-04 21:36:07 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:82,444,021
INFO 2026-06-04 21:36:07 MarkDuplicates Tracking 225255 as yet unmatched pairs. 2377 records in RAM.
INFO 2026-06-04 21:36:08 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr18:9,254,429
INFO 2026-06-04 21:36:08 MarkDuplicates Tracking 221637 as yet unmatched pairs. 9338 records in RAM.
INFO 2026-06-04 21:36:10 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr18:23,928,715
INFO 2026-06-04 21:36:10 MarkDuplicates Tracking 219520 as yet unmatched pairs. 7204 records in RAM.
INFO 2026-06-04 21:36:11 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr18:42,015,493
INFO 2026-06-04 21:36:11 MarkDuplicates Tracking 217806 as yet unmatched pairs. 5482 records in RAM.
INFO 2026-06-04 21:36:13 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr18:54,877,638
INFO 2026-06-04 21:36:13 MarkDuplicates Tracking 215562 as yet unmatched pairs. 3231 records in RAM.
INFO 2026-06-04 21:36:14 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr18:63,397,212
INFO 2026-06-04 21:36:14 MarkDuplicates Tracking 214069 as yet unmatched pairs. 1727 records in RAM.
INFO 2026-06-04 21:36:17 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 2s. Last read position: chr19:621,125
INFO 2026-06-04 21:36:17 MarkDuplicates Tracking 211754 as yet unmatched pairs. 96965 records in RAM.
INFO 2026-06-04 21:36:19 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 2s. Last read position: chr19:1,089,925
INFO 2026-06-04 21:36:19 MarkDuplicates Tracking 210480 as yet unmatched pairs. 95686 records in RAM.
INFO 2026-06-04 21:36:21 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,155
INFO 2026-06-04 21:36:21 MarkDuplicates Tracking 212014 as yet unmatched pairs. 97214 records in RAM.
INFO 2026-06-04 21:36:23 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,235,776
INFO 2026-06-04 21:36:23 MarkDuplicates Tracking 206380 as yet unmatched pairs. 91574 records in RAM.
INFO 2026-06-04 21:36:24 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:3,613,280
INFO 2026-06-04 21:36:24 MarkDuplicates Tracking 202573 as yet unmatched pairs. 87763 records in RAM.
INFO 2026-06-04 21:36:26 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:4,714,133
INFO 2026-06-04 21:36:26 MarkDuplicates Tracking 201536 as yet unmatched pairs. 86723 records in RAM.
INFO 2026-06-04 21:36:27 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:5,844,565
INFO 2026-06-04 21:36:27 MarkDuplicates Tracking 201985 as yet unmatched pairs. 87168 records in RAM.
INFO 2026-06-04 21:36:29 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:6,713,302
INFO 2026-06-04 21:36:29 MarkDuplicates Tracking 197329 as yet unmatched pairs. 82512 records in RAM.
INFO 2026-06-04 21:36:30 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:7,967,602
INFO 2026-06-04 21:36:30 MarkDuplicates Tracking 194241 as yet unmatched pairs. 79417 records in RAM.
INFO 2026-06-04 21:36:32 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr19:10,168,330
INFO 2026-06-04 21:36:32 MarkDuplicates Tracking 192027 as yet unmatched pairs. 77200 records in RAM.
INFO 2026-06-04 21:36:33 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,832,987
INFO 2026-06-04 21:36:33 MarkDuplicates Tracking 190118 as yet unmatched pairs. 75284 records in RAM.
INFO 2026-06-04 21:36:35 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,350
INFO 2026-06-04 21:36:35 MarkDuplicates Tracking 187717 as yet unmatched pairs. 72880 records in RAM.
INFO 2026-06-04 21:36:36 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,939,603
INFO 2026-06-04 21:36:36 MarkDuplicates Tracking 188199 as yet unmatched pairs. 73354 records in RAM.
INFO 2026-06-04 21:36:38 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:14,106,844
INFO 2026-06-04 21:36:38 MarkDuplicates Tracking 184037 as yet unmatched pairs. 69185 records in RAM.
INFO 2026-06-04 21:36:39 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,417
INFO 2026-06-04 21:36:39 MarkDuplicates Tracking 181822 as yet unmatched pairs. 66968 records in RAM.
INFO 2026-06-04 21:36:41 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:15,682,460
INFO 2026-06-04 21:36:41 MarkDuplicates Tracking 179459 as yet unmatched pairs. 64605 records in RAM.
INFO 2026-06-04 21:36:43 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:17,352,196
INFO 2026-06-04 21:36:43 MarkDuplicates Tracking 177459 as yet unmatched pairs. 62591 records in RAM.
INFO 2026-06-04 21:36:44 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:18,312,606
INFO 2026-06-04 21:36:44 MarkDuplicates Tracking 176435 as yet unmatched pairs. 61563 records in RAM.
INFO 2026-06-04 21:36:47 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr19:19,427,896
INFO 2026-06-04 21:36:47 MarkDuplicates Tracking 172889 as yet unmatched pairs. 58014 records in RAM.
INFO 2026-06-04 21:36:48 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:33,812,848
INFO 2026-06-04 21:36:48 MarkDuplicates Tracking 170647 as yet unmatched pairs. 55768 records in RAM.
INFO 2026-06-04 21:36:50 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:35,269,097
INFO 2026-06-04 21:36:50 MarkDuplicates Tracking 169172 as yet unmatched pairs. 54288 records in RAM.
INFO 2026-06-04 21:36:51 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:37,242,852
INFO 2026-06-04 21:36:51 MarkDuplicates Tracking 166390 as yet unmatched pairs. 51496 records in RAM.
INFO 2026-06-04 21:36:53 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:38,721,537
INFO 2026-06-04 21:36:53 MarkDuplicates Tracking 167726 as yet unmatched pairs. 52818 records in RAM.
INFO 2026-06-04 21:36:54 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,169,597
INFO 2026-06-04 21:36:54 MarkDuplicates Tracking 162767 as yet unmatched pairs. 47847 records in RAM.
INFO 2026-06-04 21:36:56 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:39,445,878
INFO 2026-06-04 21:36:56 MarkDuplicates Tracking 160408 as yet unmatched pairs. 45486 records in RAM.
INFO 2026-06-04 21:36:57 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:40,265,245
INFO 2026-06-04 21:36:57 MarkDuplicates Tracking 159601 as yet unmatched pairs. 44678 records in RAM.
INFO 2026-06-04 21:36:59 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:41,264,724
INFO 2026-06-04 21:36:59 MarkDuplicates Tracking 157310 as yet unmatched pairs. 42383 records in RAM.
INFO 2026-06-04 21:37:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,994
INFO 2026-06-04 21:37:00 MarkDuplicates Tracking 160212 as yet unmatched pairs. 45281 records in RAM.
INFO 2026-06-04 21:37:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:41,718,248
INFO 2026-06-04 21:37:02 MarkDuplicates Tracking 168986 as yet unmatched pairs. 54050 records in RAM.
INFO 2026-06-04 21:37:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,457
INFO 2026-06-04 21:37:04 MarkDuplicates Tracking 156787 as yet unmatched pairs. 41850 records in RAM.
INFO 2026-06-04 21:37:06 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,935
INFO 2026-06-04 21:37:06 MarkDuplicates Tracking 149327 as yet unmatched pairs. 34377 records in RAM.
INFO 2026-06-04 21:37:07 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:43,535,337
INFO 2026-06-04 21:37:07 MarkDuplicates Tracking 146798 as yet unmatched pairs. 31844 records in RAM.
INFO 2026-06-04 21:37:09 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:44,908,981
INFO 2026-06-04 21:37:09 MarkDuplicates Tracking 145815 as yet unmatched pairs. 30853 records in RAM.
INFO 2026-06-04 21:37:11 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr19:45,688,430
INFO 2026-06-04 21:37:11 MarkDuplicates Tracking 145159 as yet unmatched pairs. 30188 records in RAM.
INFO 2026-06-04 21:37:13 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:46,919,325
INFO 2026-06-04 21:37:13 MarkDuplicates Tracking 140507 as yet unmatched pairs. 25529 records in RAM.
INFO 2026-06-04 21:37:14 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,218,871
INFO 2026-06-04 21:37:14 MarkDuplicates Tracking 138012 as yet unmatched pairs. 23026 records in RAM.
INFO 2026-06-04 21:37:16 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr19:48,875,637
INFO 2026-06-04 21:37:16 MarkDuplicates Tracking 136263 as yet unmatched pairs. 21270 records in RAM.
INFO 2026-06-04 21:37:18 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,489,853
INFO 2026-06-04 21:37:18 MarkDuplicates Tracking 146563 as yet unmatched pairs. 31568 records in RAM.
INFO 2026-06-04 21:37:19 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:49,596,827
INFO 2026-06-04 21:37:19 MarkDuplicates Tracking 131610 as yet unmatched pairs. 16614 records in RAM.
INFO 2026-06-04 21:37:21 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,862,049
INFO 2026-06-04 21:37:21 MarkDuplicates Tracking 130157 as yet unmatched pairs. 15154 records in RAM.
INFO 2026-06-04 21:37:22 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:50,292,280
INFO 2026-06-04 21:37:22 MarkDuplicates Tracking 128277 as yet unmatched pairs. 13271 records in RAM.
INFO 2026-06-04 21:37:24 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:52,612,985
INFO 2026-06-04 21:37:24 MarkDuplicates Tracking 125024 as yet unmatched pairs. 10014 records in RAM.
INFO 2026-06-04 21:37:25 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:54,218,407
INFO 2026-06-04 21:37:25 MarkDuplicates Tracking 122848 as yet unmatched pairs. 7830 records in RAM.
INFO 2026-06-04 21:37:27 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:55,384,009
INFO 2026-06-04 21:37:27 MarkDuplicates Tracking 121422 as yet unmatched pairs. 6401 records in RAM.
INFO 2026-06-04 21:37:28 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,692,967
INFO 2026-06-04 21:37:28 MarkDuplicates Tracking 120158 as yet unmatched pairs. 5132 records in RAM.
INFO 2026-06-04 21:37:30 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:58,392,987
INFO 2026-06-04 21:37:30 MarkDuplicates Tracking 121282 as yet unmatched pairs. 6247 records in RAM.
INFO 2026-06-04 21:37:31 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:1,125,534
INFO 2026-06-04 21:37:31 MarkDuplicates Tracking 115143 as yet unmatched pairs. 37925 records in RAM.
INFO 2026-06-04 21:37:33 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr20:3,287,664
INFO 2026-06-04 21:37:33 MarkDuplicates Tracking 112173 as yet unmatched pairs. 34955 records in RAM.
INFO 2026-06-04 21:37:35 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:6,112,556
INFO 2026-06-04 21:37:35 MarkDuplicates Tracking 110989 as yet unmatched pairs. 33765 records in RAM.
INFO 2026-06-04 21:37:36 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:17,619,685
INFO 2026-06-04 21:37:36 MarkDuplicates Tracking 111214 as yet unmatched pairs. 33982 records in RAM.
INFO 2026-06-04 21:37:37 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr20:18,315,166
INFO 2026-06-04 21:37:37 MarkDuplicates Tracking 106251 as yet unmatched pairs. 29018 records in RAM.
INFO 2026-06-04 21:37:39 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr20:24,983,998
INFO 2026-06-04 21:37:39 MarkDuplicates Tracking 104497 as yet unmatched pairs. 27259 records in RAM.
INFO 2026-06-04 21:37:41 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr20:32,309,805
INFO 2026-06-04 21:37:41 MarkDuplicates Tracking 102385 as yet unmatched pairs. 25146 records in RAM.
INFO 2026-06-04 21:37:42 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr20:34,740,915
INFO 2026-06-04 21:37:42 MarkDuplicates Tracking 101390 as yet unmatched pairs. 24149 records in RAM.
INFO 2026-06-04 21:37:43 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr20:35,653,121
INFO 2026-06-04 21:37:43 MarkDuplicates Tracking 98324 as yet unmatched pairs. 21078 records in RAM.
INFO 2026-06-04 21:37:45 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr20:37,137,879
INFO 2026-06-04 21:37:45 MarkDuplicates Tracking 95899 as yet unmatched pairs. 18650 records in RAM.
INFO 2026-06-04 21:37:47 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr20:41,137,779
INFO 2026-06-04 21:37:47 MarkDuplicates Tracking 94233 as yet unmatched pairs. 16975 records in RAM.
INFO 2026-06-04 21:37:48 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr20:45,109,744
INFO 2026-06-04 21:37:48 MarkDuplicates Tracking 91930 as yet unmatched pairs. 14671 records in RAM.
INFO 2026-06-04 21:37:50 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr20:45,909,998
INFO 2026-06-04 21:37:50 MarkDuplicates Tracking 90142 as yet unmatched pairs. 12882 records in RAM.
INFO 2026-06-04 21:37:52 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:49,239,071
INFO 2026-06-04 21:37:52 MarkDuplicates Tracking 88371 as yet unmatched pairs. 11102 records in RAM.
INFO 2026-06-04 21:37:54 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:51,674,193
INFO 2026-06-04 21:37:54 MarkDuplicates Tracking 88450 as yet unmatched pairs. 11174 records in RAM.
INFO 2026-06-04 21:37:55 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,625
INFO 2026-06-04 21:37:55 MarkDuplicates Tracking 90663 as yet unmatched pairs. 13381 records in RAM.
INFO 2026-06-04 21:37:56 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:62,307,716
INFO 2026-06-04 21:37:56 MarkDuplicates Tracking 82801 as yet unmatched pairs. 5519 records in RAM.
INFO 2026-06-04 21:37:58 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,743
INFO 2026-06-04 21:37:58 MarkDuplicates Tracking 85043 as yet unmatched pairs. 7758 records in RAM.
INFO 2026-06-04 21:37:59 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr21:5,036,292
INFO 2026-06-04 21:37:59 MarkDuplicates Tracking 77260 as yet unmatched pairs. 14332 records in RAM.
INFO 2026-06-04 21:38:01 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-04 21:38:01 MarkDuplicates Tracking 76195 as yet unmatched pairs. 13258 records in RAM.
INFO 2026-06-04 21:38:02 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr21:15,818,780
INFO 2026-06-04 21:38:02 MarkDuplicates Tracking 75566 as yet unmatched pairs. 12627 records in RAM.
INFO 2026-06-04 21:38:03 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr21:31,701,016
INFO 2026-06-04 21:38:03 MarkDuplicates Tracking 73449 as yet unmatched pairs. 10498 records in RAM.
INFO 2026-06-04 21:38:05 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr21:36,246,170
INFO 2026-06-04 21:38:05 MarkDuplicates Tracking 71218 as yet unmatched pairs. 8265 records in RAM.
INFO 2026-06-04 21:38:06 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr21:41,466,064
INFO 2026-06-04 21:38:06 MarkDuplicates Tracking 70973 as yet unmatched pairs. 8016 records in RAM.
INFO 2026-06-04 21:38:08 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr21:44,311,012
INFO 2026-06-04 21:38:08 MarkDuplicates Tracking 67694 as yet unmatched pairs. 4735 records in RAM.
INFO 2026-06-04 21:38:09 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,332
INFO 2026-06-04 21:38:09 MarkDuplicates Tracking 65828 as yet unmatched pairs. 2867 records in RAM.
INFO 2026-06-04 21:38:11 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr22:17,209,417
INFO 2026-06-04 21:38:11 MarkDuplicates Tracking 63135 as yet unmatched pairs. 30606 records in RAM.
INFO 2026-06-04 21:38:12 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:20,765,636
INFO 2026-06-04 21:38:12 MarkDuplicates Tracking 60972 as yet unmatched pairs. 28436 records in RAM.
INFO 2026-06-04 21:38:14 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr22:23,772,969
INFO 2026-06-04 21:38:14 MarkDuplicates Tracking 60260 as yet unmatched pairs. 27721 records in RAM.
INFO 2026-06-04 21:38:16 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr22:26,560,975
INFO 2026-06-04 21:38:16 MarkDuplicates Tracking 56342 as yet unmatched pairs. 23803 records in RAM.
INFO 2026-06-04 21:38:18 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,719
INFO 2026-06-04 21:38:18 MarkDuplicates Tracking 57300 as yet unmatched pairs. 24761 records in RAM.
INFO 2026-06-04 21:38:19 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr22:31,341,533
INFO 2026-06-04 21:38:19 MarkDuplicates Tracking 52368 as yet unmatched pairs. 19826 records in RAM.
INFO 2026-06-04 21:38:21 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,265,656
INFO 2026-06-04 21:38:21 MarkDuplicates Tracking 50830 as yet unmatched pairs. 18286 records in RAM.
INFO 2026-06-04 21:38:22 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr22:36,320,815
INFO 2026-06-04 21:38:22 MarkDuplicates Tracking 51873 as yet unmatched pairs. 19327 records in RAM.
INFO 2026-06-04 21:38:24 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:37,757,804
INFO 2026-06-04 21:38:24 MarkDuplicates Tracking 47116 as yet unmatched pairs. 14569 records in RAM.
INFO 2026-06-04 21:38:25 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,338
INFO 2026-06-04 21:38:25 MarkDuplicates Tracking 44485 as yet unmatched pairs. 11935 records in RAM.
INFO 2026-06-04 21:38:27 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:41,164,076
INFO 2026-06-04 21:38:27 MarkDuplicates Tracking 43123 as yet unmatched pairs. 10570 records in RAM.
INFO 2026-06-04 21:38:28 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:42,086,171
INFO 2026-06-04 21:38:28 MarkDuplicates Tracking 42403 as yet unmatched pairs. 9847 records in RAM.
INFO 2026-06-04 21:38:30 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:45,533,882
INFO 2026-06-04 21:38:30 MarkDuplicates Tracking 38419 as yet unmatched pairs. 5863 records in RAM.
INFO 2026-06-04 21:38:31 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:50,280,645
INFO 2026-06-04 21:38:31 MarkDuplicates Tracking 35630 as yet unmatched pairs. 3073 records in RAM.
INFO 2026-06-04 21:38:33 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:50,569,361
INFO 2026-06-04 21:38:33 MarkDuplicates Tracking 33032 as yet unmatched pairs. 475 records in RAM.
INFO 2026-06-04 21:38:35 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:3,615,815
INFO 2026-06-04 21:38:35 MarkDuplicates Tracking 31125 as yet unmatched pairs. 27106 records in RAM.
INFO 2026-06-04 21:38:36 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chrX:20,128,273
INFO 2026-06-04 21:38:36 MarkDuplicates Tracking 30345 as yet unmatched pairs. 26318 records in RAM.
INFO 2026-06-04 21:38:38 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,956
INFO 2026-06-04 21:38:38 MarkDuplicates Tracking 27597 as yet unmatched pairs. 23569 records in RAM.
INFO 2026-06-04 21:38:40 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:47,169,405
INFO 2026-06-04 21:38:40 MarkDuplicates Tracking 25274 as yet unmatched pairs. 21245 records in RAM.
INFO 2026-06-04 21:38:41 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chrX:48,923,667
INFO 2026-06-04 21:38:41 MarkDuplicates Tracking 23475 as yet unmatched pairs. 19446 records in RAM.
INFO 2026-06-04 21:38:43 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chrX:53,551,410
INFO 2026-06-04 21:38:43 MarkDuplicates Tracking 22064 as yet unmatched pairs. 18031 records in RAM.
INFO 2026-06-04 21:38:45 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:68,718,061
INFO 2026-06-04 21:38:45 MarkDuplicates Tracking 19180 as yet unmatched pairs. 15147 records in RAM.
INFO 2026-06-04 21:38:47 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chrX:74,529,220
INFO 2026-06-04 21:38:47 MarkDuplicates Tracking 17305 as yet unmatched pairs. 13269 records in RAM.
INFO 2026-06-04 21:38:48 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:100,635,695
INFO 2026-06-04 21:38:48 MarkDuplicates Tracking 16326 as yet unmatched pairs. 12287 records in RAM.
INFO 2026-06-04 21:38:50 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:118,542,748
INFO 2026-06-04 21:38:50 MarkDuplicates Tracking 13786 as yet unmatched pairs. 9747 records in RAM.
INFO 2026-06-04 21:38:51 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:130,028,791
INFO 2026-06-04 21:38:51 MarkDuplicates Tracking 11911 as yet unmatched pairs. 7871 records in RAM.
INFO 2026-06-04 21:38:53 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:153,588,333
INFO 2026-06-04 21:38:53 MarkDuplicates Tracking 9931 as yet unmatched pairs. 5890 records in RAM.
INFO 2026-06-04 21:38:54 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,758
INFO 2026-06-04 21:38:54 MarkDuplicates Tracking 10617 as yet unmatched pairs. 6573 records in RAM.
INFO 2026-06-04 21:38:56 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,923
INFO 2026-06-04 21:38:56 MarkDuplicates Tracking 8048 as yet unmatched pairs. 4004 records in RAM.
INFO 2026-06-04 21:38:58 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrM:2,441
INFO 2026-06-04 21:38:58 MarkDuplicates Tracking 3986 as yet unmatched pairs. 566 records in RAM.
INFO 2026-06-04 21:38:59 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,239
INFO 2026-06-04 21:38:59 MarkDuplicates Tracking 1756 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-04 21:39:00 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,397
INFO 2026-06-04 21:39:00 MarkDuplicates Tracking 66 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-04 21:39:00 MarkDuplicates Read 638362544 records. 0 pairs never matched.
INFO 2026-06-04 21:39:52 MarkDuplicates After buildSortedReadEndLists freeMemory: 204143224; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-04 21:39:52 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-04 21:39:56 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-04 21:39:56 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 21:40:14 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-04 21:40:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,669
INFO 2026-06-04 21:40:18 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-04 21:40:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,846
INFO 2026-06-04 21:40:19 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-04 21:40:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,466
INFO 2026-06-04 21:40:21 OpticalDuplicateFinder Large duplicate set. size = 1694
INFO 2026-06-04 21:40:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111
INFO 2026-06-04 21:40:21 OpticalDuplicateFinder Large duplicate set. size = 1248
INFO 2026-06-04 21:40:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,409
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder Large duplicate set. size = 1372
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,219
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,822
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-04 21:40:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,983
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,216
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,098
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,410
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1402
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,264
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1782
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,873
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1866
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,416
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,207
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 2889
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,012
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,148
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,545
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,193
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-04 21:40:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,475
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,704
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,486
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1768
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,615
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,466
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,416
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,248
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,933
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1443
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,059
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 2301
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,423
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,416
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,670
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1789
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,035
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,927
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,349
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1780
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,743
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1578
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,451
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,396
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,273
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,801
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-04 21:40:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,004
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,027
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,101
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,135
INFO 2026-06-04 21:41:00 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-04 21:41:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 21:42:03 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-04 21:42:13 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792648600; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-04 21:42:13 MarkDuplicates Marking 248905960 records as duplicates.
INFO 2026-06-04 21:42:13 MarkDuplicates Found 15799727 optical duplicate clusters.
INFO 2026-06-04 21:42:13 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-04 21:42:31 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,759,582
INFO 2026-06-04 21:42:49 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:51,468,557
INFO 2026-06-04 21:43:07 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:144,415,592
INFO 2026-06-04 21:43:24 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:11s. Time for last 10,000,000: 17s. Last read position: chr1:155,188,393
INFO 2026-06-04 21:43:41 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 17s. Last read position: chr1:182,602,421
INFO 2026-06-04 21:43:59 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:46s. Time for last 10,000,000: 17s. Last read position: chr1:227,028,721
INFO 2026-06-04 21:44:16 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,351
INFO 2026-06-04 21:44:34 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 17s. Last read position: chr2:79,122,061
INFO 2026-06-04 21:44:51 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 17s. Last read position: chr2:177,219,143
INFO 2026-06-04 21:45:09 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 17s. Last read position: chr2:216,499,297
INFO 2026-06-04 21:45:26 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:12s. Time for last 10,000,000: 17s. Last read position: chr3:37,011,840
INFO 2026-06-04 21:45:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 17s. Last read position: chr3:101,681,129
INFO 2026-06-04 21:46:00 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 17s. Last read position: chr3:188,406,250
INFO 2026-06-04 21:46:19 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 18s. Last read position: chr4:48,557,495
INFO 2026-06-04 21:46:38 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 18s. Last read position: chr4:153,270,343
INFO 2026-06-04 21:46:57 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:44s. Time for last 10,000,000: 18s. Last read position: chr5:74,720,467
INFO 2026-06-04 21:47:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:03s. Time for last 10,000,000: 19s. Last read position: chr5:150,135,670
INFO 2026-06-04 21:47:35 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 18s. Last read position: chr6:7,248,552
INFO 2026-06-04 21:47:53 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 17s. Last read position: chr6:31,829,257
INFO 2026-06-04 21:48:11 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 18s. Last read position: chr6:47,607,927
INFO 2026-06-04 21:48:30 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 19s. Last read position: chr6:151,350,469
INFO 2026-06-04 21:48:48 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 18s. Last read position: chr7:27,526,348
INFO 2026-06-04 21:49:06 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 17s. Last read position: chr7:94,407,850
INFO 2026-06-04 21:49:22 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 16s. Last read position: chr7:100,996,448
INFO 2026-06-04 21:49:39 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 16s. Last read position: chr7:101,001,583
INFO 2026-06-04 21:49:56 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 16s. Last read position: chr7:137,882,422
INFO 2026-06-04 21:50:13 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 17s. Last read position: chr8:37,698,222
INFO 2026-06-04 21:50:30 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 17s. Last read position: chr8:123,025,008
INFO 2026-06-04 21:50:46 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr8:144,097,046
INFO 2026-06-04 21:51:03 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 17s. Last read position: chr9:105,521,437
INFO 2026-06-04 21:51:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 16s. Last read position: chr9:137,242,846
INFO 2026-06-04 21:51:37 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 17s. Last read position: chr10:78,037,232
INFO 2026-06-04 21:51:54 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 17s. Last read position: chr10:122,613,187
INFO 2026-06-04 21:52:11 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 16s. Last read position: chr11:9,527,556
INFO 2026-06-04 21:52:28 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 17s. Last read position: chr11:62,529,826
INFO 2026-06-04 21:52:45 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 16s. Last read position: chr11:74,074,411
INFO 2026-06-04 21:53:02 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 17s. Last read position: chr12:6,019,073
INFO 2026-06-04 21:53:19 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 16s. Last read position: chr12:51,379,622
INFO 2026-06-04 21:53:35 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 16s. Last read position: chr12:95,030,454
INFO 2026-06-04 21:53:52 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 16s. Last read position: chr13:27,968,909
INFO 2026-06-04 21:54:09 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:55s. Time for last 10,000,000: 16s. Last read position: chr13:114,325,272
INFO 2026-06-04 21:54:26 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 16s. Last read position: chr14:75,469,289
INFO 2026-06-04 21:54:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:29s. Time for last 10,000,000: 16s. Last read position: chr15:20,458,260
INFO 2026-06-04 21:54:59 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 16s. Last read position: chr15:66,501,466
INFO 2026-06-04 21:55:16 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 16s. Last read position: chr16:2,213,684
INFO 2026-06-04 21:55:32 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 16s. Last read position: chr16:22,513,788
INFO 2026-06-04 21:55:49 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 16s. Last read position: chr16:57,650,320
INFO 2026-06-04 21:56:06 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 17s. Last read position: chr17:1,100,672
INFO 2026-06-04 21:56:23 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 16s. Last read position: chr17:27,778,971
INFO 2026-06-04 21:56:40 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 17s. Last read position: chr17:48,059,469
INFO 2026-06-04 21:56:56 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:43s. Time for last 10,000,000: 16s. Last read position: chr17:50,193,961
INFO 2026-06-04 21:57:13 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 16s. Last read position: chr17:59,682,763
INFO 2026-06-04 21:57:30 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 16s. Last read position: chr18:9,254,429
INFO 2026-06-04 21:57:47 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 16s. Last read position: chr19:4,714,133
INFO 2026-06-04 21:58:03 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:50s. Time for last 10,000,000: 16s. Last read position: chr19:15,682,460
INFO 2026-06-04 21:58:20 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:07s. Time for last 10,000,000: 16s. Last read position: chr19:40,265,245
INFO 2026-06-04 21:58:37 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 16s. Last read position: chr19:48,218,871
INFO 2026-06-04 21:58:53 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:40s. Time for last 10,000,000: 16s. Last read position: chr19:58,392,987
INFO 2026-06-04 21:59:10 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:57s. Time for last 10,000,000: 17s. Last read position: chr20:37,137,879
INFO 2026-06-04 21:59:27 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:14s. Time for last 10,000,000: 16s. Last read position: chr21:8,397,783
INFO 2026-06-04 21:59:44 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 16s. Last read position: chr22:26,560,975
INFO 2026-06-04 22:00:01 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:47s. Time for last 10,000,000: 16s. Last read position: chr22:50,280,645
INFO 2026-06-04 22:00:18 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:04s. Time for last 10,000,000: 16s. Last read position: chrX:100,635,695
INFO 2026-06-04 22:00:36 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:22s. Time for last 10,000,000: 18s. Last read position: */*
INFO 2026-06-04 22:00:40 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-04 22:00:40 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-04 22:00:40 MarkDuplicates Getting Memory Stats.
INFO 2026-06-04 22:00:40 MarkDuplicates Before output close freeMemory: 5011360840; totalMemory: 26809991168; maxMemory: 63585648640
INFO 2026-06-04 22:00:40 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-04 22:00:40 MarkDuplicates After output close freeMemory: 203852200; totalMemory: 234881024; maxMemory: 63585648640
[Thu Jun 04 22:00:40 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.92 minutes.
Runtime.totalMemory()=234881024
ls: *cram: No such file or directory
ls: *.crai: No such file or directory