Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/93a632584eb29d4b8e07d0fdb1e313/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d7e941422d7344a4f6638f1342f4e4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d7e941422d7344a4f6638f1342f4e4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/5095ca24cc799e6d6e75cacc570c6b/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 330602319
[W::hts_idx_load3] The index file is older than the data file: 659_bTq-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	330602319
Known Splicing Events:	327091937
Partial Novel Splicing Events:	1909492
Novel Splicing Events:	1519456
Filtered Splicing Events:	81434

Total splicing  Junctions:	658747
Known Splicing Junctions:	297915
Partial Novel Splicing Junctions:	209894
Novel Splicing Junctions:	150938

===================================================================
Create BED file ...
Create Interact file ...