Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/3e4244ed81bb9a488fe181dc0d74d1/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c999aaa74076b07ed329f48f2dc6e2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c999aaa74076b07ed329f48f2dc6e2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a5f6fb2af18dd9c696cbd975302694/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 321145513
[W::hts_idx_load3] The index file is older than the data file: 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	321145513
Known Splicing Events:	318266742
Partial Novel Splicing Events:	1552127
Novel Splicing Events:	1248545
Filtered Splicing Events:	78099

Total splicing  Junctions:	591024
Known Splicing Junctions:	294319
Partial Novel Splicing Junctions:	180228
Novel Splicing Junctions:	116477

===================================================================
Create BED file ...
Create Interact file ...