File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/727927f3e026fae7621a4f2ff173e5/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_b6o-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/727927f3e026fae7621a4f2ff173e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/727927f3e026fae7621a4f2ff173e5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c7becfc6f3dbfaf793679593a7ff2f/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/2c4e95e4c628026a246b364178c64b/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 139
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	139
Known Splicing Events:	96
Partial Novel Splicing Events:	0
Novel Splicing Events:	43
Filtered Splicing Events:	0

Total splicing  Junctions:	16
Known Splicing Junctions:	5
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	11

===================================================================
Create BED file ...
Create Interact file ...