#!/bin/bash
### ---
### name: 'NFCORE_RNAFUSION:RNAFUSION:MULTIQC'
### container: '292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/multiqc:1.21--pyhdfd78af_0'
### outputs:
### - '*multiqc_report.html'
### - '*_data'
### - '*_plots'
### - 'versions.yml'
### ...
set -e
set -u
NXF_DEBUG=${NXF_DEBUG:=0}; [[ $NXF_DEBUG > 1 ]] && set -x
NXF_ENTRY=${1:-nxf_main}
nxf_tree() {
local pid=$1
declare -a ALL_CHILDREN
while read P PP;do
ALL_CHILDREN[$PP]+=" $P"
done < <(ps -e -o pid= -o ppid=)
pstat() {
local x_pid=$1
local STATUS=$(2> /dev/null < /proc/$1/status grep -E 'Vm|ctxt')
if [ $? = 0 ]; then
local x_vsz=$(echo "$STATUS" | grep VmSize | awk '{print $2}' || echo -n '0')
local x_rss=$(echo "$STATUS" | grep VmRSS | awk '{print $2}' || echo -n '0')
local x_peak=$(echo "$STATUS" | grep -E 'VmPeak|VmHWM' | sed 's/^.*:\s*//' | sed 's/[\sa-zA-Z]*$//' | tr '\n' ' ' || echo -n '0 0')
local x_pmem=$(awk -v rss=$x_rss -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo -n '0')
local vol_ctxt=$(echo "$STATUS" | grep '\bvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
local inv_ctxt=$(echo "$STATUS" | grep '\bnonvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
cpu_stat[x_pid]="$x_pid $x_pmem $x_vsz $x_rss $x_peak $vol_ctxt $inv_ctxt"
fi
}
pwalk() {
pstat $1
for i in ${ALL_CHILDREN[$1]:=}; do pwalk $i; done
}
pwalk $1
}
nxf_stat() {
cpu_stat=()
nxf_tree $1
declare -a sum=(0 0 0 0 0 0 0 0)
local pid
local i
for pid in "${!cpu_stat[@]}"; do
local row=(${cpu_stat[pid]})
[ $NXF_DEBUG = 1 ] && echo "++ stat mem=${row[*]}"
for i in "${!row[@]}"; do
if [ $i != 0 ]; then
sum[i]=$((sum[i]+row[i]))
fi
done
done
[ $NXF_DEBUG = 1 ] && echo -e "++ stat SUM=${sum[*]}"
for i in {1..7}; do
if [ ${sum[i]} -lt ${cpu_peak[i]} ]; then
sum[i]=${cpu_peak[i]}
else
cpu_peak[i]=${sum[i]}
fi
done
[ $NXF_DEBUG = 1 ] && echo -e "++ stat PEAK=${sum[*]}\n"
nxf_stat_ret=(${sum[*]})
}
nxf_mem_watch() {
set -o pipefail
local pid=$1
local trace_file=.command.trace
local count=0;
declare -a cpu_stat=(0 0 0 0 0 0 0 0)
declare -a cpu_peak=(0 0 0 0 0 0 0 0)
local mem_tot=$(< /proc/meminfo grep MemTotal | awk '{print $2}')
local timeout
local DONE
local STOP=''
[ $NXF_DEBUG = 1 ] && nxf_sleep 0.2 && ps fx
while true; do
nxf_stat $pid
if [ $count -lt 10 ]; then timeout=1;
elif [ $count -lt 120 ]; then timeout=5;
else timeout=30;
fi
read -t $timeout -r DONE || true
[[ $DONE ]] && break
if [ ! -e /proc/$pid ]; then
[ ! $STOP ] && STOP=$(nxf_date)
[ $(($(nxf_date)-STOP)) -gt 10000 ] && break
fi
count=$((count+1))
done
printf "%s\n" \
"%mem=${nxf_stat_ret[1]}" \
"vmem=${nxf_stat_ret[2]}" \
"rss=${nxf_stat_ret[3]}" \
"peak_vmem=${nxf_stat_ret[4]}" \
"peak_rss=${nxf_stat_ret[5]}" \
"vol_ctxt=${nxf_stat_ret[6]}" \
"inv_ctxt=${nxf_stat_ret[7]}" >> "$trace_file" || >&2 echo "Error: Failed to append to file: $trace_file"
}
nxf_write_trace() {
printf "%s\n" \
"nextflow.trace/v2" \
"realtime=$wall_time" \
"%cpu=$ucpu" \
"cpu_model=$cpu_model" \
"rchar=${io_stat1[0]}" \
"wchar=${io_stat1[1]}" \
"syscr=${io_stat1[2]}" \
"syscw=${io_stat1[3]}" \
"read_bytes=${io_stat1[4]}" \
"write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
}
nxf_trace_mac() {
local start_millis=$(nxf_date)
/bin/bash -euo pipefail .command.sh
local end_millis=$(nxf_date)
local wall_time=$((end_millis-start_millis))
local ucpu=''
local cpu_model=''
local io_stat1=('' '' '' '' '' '')
nxf_write_trace
}
nxf_fd() {
local FD=11
while [ -e /proc/$$/fd/$FD ]; do FD=$((FD+1)); done
echo $FD
}
nxf_trace_linux() {
local pid=$$
command -v ps &>/dev/null || { >&2 echo "Command 'ps' required by nextflow to collect task metrics cannot be found"; exit 1; }
local num_cpus=$(< /proc/cpuinfo grep '^processor' -c)
local cpu_model=$(< /proc/cpuinfo grep '^model name' | head -n 1 | awk 'BEGIN{FS="\t: "} { print $2 }')
local tot_time0=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
local cpu_time0=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
local io_stat0=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
local start_millis=$(nxf_date)
trap 'kill $mem_proc' ERR
/bin/bash -euo pipefail .command.sh &
local task=$!
mem_fd=$(nxf_fd)
eval "exec $mem_fd> >(nxf_mem_watch $task)"
local mem_proc=$!
wait $task
local end_millis=$(nxf_date)
local tot_time1=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
local cpu_time1=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
local ucpu=$(awk -v p1=$cpu_time1 -v p0=$cpu_time0 -v t1=$tot_time1 -v t0=$tot_time0 -v n=$num_cpus 'BEGIN { pct=(p1-p0)/(t1-t0)*100*n; printf("%.0f", pct>0 ? pct : 0) }' )
local io_stat1=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
local i
for i in {0..5}; do
io_stat1[i]=$((io_stat1[i]-io_stat0[i]))
done
local wall_time=$((end_millis-start_millis))
[ $NXF_DEBUG = 1 ] && echo "+++ STATS %CPU=$ucpu TIME=$wall_time I/O=${io_stat1[*]}"
printf "%s\n" \
"nextflow.trace/v2" \
"realtime=$wall_time" \
"%cpu=$ucpu" \
"cpu_model=$cpu_model" \
"rchar=${io_stat1[0]}" \
"wchar=${io_stat1[1]}" \
"syscr=${io_stat1[2]}" \
"syscw=${io_stat1[3]}" \
"read_bytes=${io_stat1[4]}" \
"write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
[ -e /proc/$mem_proc ] && eval "echo 'DONE' >&$mem_fd" || true
wait $mem_proc 2>/dev/null || true
while [ -e /proc/$mem_proc ]; do nxf_sleep 0.1; done
}
nxf_trace() {
local trace_file=.command.trace
touch $trace_file
if [[ $(uname) = Darwin ]]; then
nxf_trace_mac
else
nxf_trace_linux
fi
}
# bash helper functions
nxf_cp_retry() {
local max_attempts=1
local timeout=10
local attempt=0
local exitCode=0
while (( $attempt < $max_attempts ))
do
if "$@"
then
return 0
else
exitCode=$?
fi
if [[ $exitCode == 0 ]]
then
break
fi
nxf_sleep $timeout
attempt=$(( attempt + 1 ))
timeout=$(( timeout * 2 ))
done
}
nxf_parallel() {
IFS=$'\n'
local cmd=("$@")
local cpus=$(nproc 2>/dev/null || < /proc/cpuinfo grep '^process' -c)
local max=$(if (( cpus>4 )); then echo 4; else echo $cpus; fi)
local i=0
local pid=()
(
set +u
while ((i<${#cmd[@]})); do
local copy=()
for x in "${pid[@]}"; do
# if the process exist, keep in the 'copy' array, otherwise wait on it to capture the exit code
# see https://github.com/nextflow-io/nextflow/pull/4050
[[ -e /proc/$x ]] && copy+=($x) || wait $x
done
pid=("${copy[@]}")
if ((${#pid[@]}>=$max)); then
nxf_sleep 0.2
else
eval "${cmd[$i]}" &
pid+=($!)
((i+=1))
fi
done
for p in "${pid[@]}"; do
wait $p
done
)
unset IFS
}
# aws helper for s5cmd
nxf_s3_upload() {
local name=$1
local s3path=$2
if [[ "$name" == - ]]; then
local tmp=$(nxf_mktemp)
cp /dev/stdin $tmp/$name
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD $tmp/$name "$s3path"
elif [[ -d "$name" ]]; then
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name/" "$s3path/$name/"
else
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name" "$s3path/$name"
fi
}
nxf_s3_download() {
local source=$1
local target=$2
echo " Downloading: $source"
local file_name=$(basename $1)
local is_dir=$(/opt/s5cmd/bin/s5cmd ls $source | grep -F "DIR ${file_name}/" -c)
if [[ $is_dir == 1 ]]; then
/opt/s5cmd/bin/s5cmd --log error cp "$source/*" "$target"
else
/opt/s5cmd/bin/s5cmd --log error cp "$source" "$target"
fi
}
nxf_sleep() {
sleep $1 2>/dev/null || sleep 1;
}
nxf_date() {
local ts=$(date +%s%3N);
if [[ ${#ts} == 10 ]]; then echo ${ts}000
elif [[ $ts == *%3N ]]; then echo ${ts/\%3N/000}
elif [[ $ts == *3N ]]; then echo ${ts/3N/000}
elif [[ ${#ts} == 13 ]]; then echo $ts
else echo "Unexpected timestamp value: $ts"; exit 1
fi
}
nxf_env() {
echo '============= task environment ============='
env | sort | sed "s/\(.*\)AWS\(.*\)=\(.\{6\}\).*/\1AWS\2=\3xxxxxxxxxxxxx/"
echo '============= task output =================='
}
nxf_kill() {
declare -a children
while read P PP;do
children[$PP]+=" $P"
done < <(ps -e -o pid= -o ppid=)
kill_all() {
[[ $1 != $$ ]] && kill $1 2>/dev/null || true
for i in ${children[$1]:=}; do kill_all $i; done
}
kill_all $1
}
nxf_mktemp() {
local base=${1:-/tmp}
mkdir -p "$base"
if [[ $(uname) = Darwin ]]; then mktemp -d $base/nxf.XXXXXXXXXX
else TMPDIR="$base" mktemp -d -t nxf.XXXXXXXXXX
fi
}
nxf_fs_copy() {
local source=$1
local target=$2
local basedir=$(dirname $1)
mkdir -p $target/$basedir
cp -fRL $source $target/$basedir
}
nxf_fs_move() {
local source=$1
local target=$2
local basedir=$(dirname $1)
mkdir -p $target/$basedir
mv -f $source $target/$basedir
}
nxf_fs_rsync() {
rsync -rRl $1 $2
}
nxf_fs_rclone() {
rclone copyto $1 $2/$1
}
nxf_fs_fcp() {
fcp $1 $2/$1
}
on_exit() {
local last_err=$?
local exit_status=${nxf_main_ret:=0}
[[ ${exit_status} -eq 0 && ${nxf_unstage_ret:=0} -ne 0 ]] && exit_status=${nxf_unstage_ret:=0}
[[ ${exit_status} -eq 0 && ${last_err} -ne 0 ]] && exit_status=${last_err}
printf -- $exit_status | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8/.exitcode || true
set +u
rm -rf $NXF_SCRATCH || true
exit $exit_status
}
on_term() {
set +e
[[ "$pid" ]] && nxf_kill $pid
}
nxf_launch() {
/bin/bash -euo pipefail .command.run nxf_trace
}
nxf_stage() {
true
# stage input files
downloads=(true)
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/fdce955fecc09fa9e9fc43c5b83e08/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1618/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/44ec1eb43a770f6af4a608c91bc6df/659_eKx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1266/659_eKx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e7dcd74675645a56081889eb6adb04/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.attempt1.command.log 2167/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/7992f938aa883790a326645dd15aa4/659_bMa-T1-TRNA-1_B23MHV2LT4_1.fastp.json 29/659_bMa-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/379e8d84e7fc9ca8583d9b130a3e1c/659_ezg-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1416/659_ezg-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/de4daa28a564a2f83ae99e262126d3/659_cTi-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1295/659_cTi-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/414537cc3e4d82ff99d353d3ade075/659_cGW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1272/659_cGW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/22cf9546f65de0b300bc8332a0d0bf/659_dRe-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2147/659_dRe-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cb96c45f2c3dde7736b17bb855dd3e/659_ePR-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 315/659_ePR-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b09e3808c620749c6de7e7c66fec29/659_epP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 960/659_epP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/92718054684d5a3a71b13bddc61e85/659_Wm-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 582/659_Wm-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/377f09f90eae36f8f43a95735b4f77/659_eKx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 882/659_eKx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c7becfc6f3dbfaf793679593a7ff2f/659_b6o-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 679/659_b6o-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/329ec61e9f8bb30aa97716939c5a22/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1435/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/cb6cab874c95a4c7f591754e9f183d/659_buD-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 291/659_buD-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/48b08362ec2b0b34925c2e1aad6a98/659_cB6-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1428/659_cB6-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/cc4000a165b8d24e500c3a48ab302d/659_d0M-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2124/659_d0M-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/6d5114ef1df8640f05a096836bd743/659_epZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1812/659_epZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/44606a9d3fe87331591f350ef99fe5/659_dKM-T1-TRNA-1_B23MHV2LT4_1.fastp.json 70/659_dKM-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/e3c96d6b5ef8c516feab49cfe8c4f0/659_1q-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1223/659_1q-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/aae230debf1c5a6c87d189d83ca876/659_djb-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1147/659_djb-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/9ad06a8336977f6f4f5b86452d62ed/659_bTq-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1992/659_bTq-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8f5ed72ffc9ac6fb3018ea39c51f7a/659_dHy-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 661/659_dHy-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/1ce248358befd09a3e592ef2d95cf3/659_Dd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 948/659_Dd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/13b89d5ace797571d30a29783c67bd/659_bGW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2359/659_bGW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/0a96fb38a5fd38bf169db3be51e885/659_bGc-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1572/659_bGc-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/53b4c97d0b717052ed27544131fe83/659_wQ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2202/659_wQ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0b581287a4b994e3b54b41676cf353/659_bGW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1206/659_bGW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/36a7a5bbcbf3c6b434ac71b2d3783d/659_c95-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1706/659_c95-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/dcadb5dd88dc19bf92c69313c4f870/659_bCu-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log 2194/659_bCu-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/393ce66546243f4edc6f5d52e4047c/659_d01-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2197/659_d01-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/b28f510ccb4de7f93731fde177763e/NTC_0001_0001_B23MHV2LT4_2.read_distribution.txt 1462/NTC_0001_0001_B23MHV2LT4_2.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/6bf6f554d2d0b94635320da684c8ab/659_rd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 256/659_rd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/e35c4e1d7c43ce458a7d2056e2db22/659_cAa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1929/659_cAa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/e3ef99e10ce3b7eeb109c7809a3dc7/659_ecd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1985/659_ecd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/0c18b5dd04106f086d816b77027f94/659_eHw-T1-TRNA-1_B23MHV2LT4_1.fastp.html 193/659_eHw-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/57f72249396457ace3462c2cb82d8a/659_d0V-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 216/659_d0V-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/77a41f0a9ef2855d464d9aabed995d/659_cYf-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1575/659_cYf-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8db7c686c0c259595b41268a9f0acf/659_8h-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1923/659_8h-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/88ab499682d1deb1a7395b59481c34/659_cq5-T1-TRNA-1_B23MHV2LT4_1.fastp.html 106/659_cq5-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ef81ed422c9d669adce81c91618cdb/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_trimmed_2_fastqc.zip 386/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/16f3312a564d920ebff070c134ba80/659_dwi-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 976/659_dwi-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b98f8310acc94b822faec50a5496f8/659_dfA-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 375/659_dfA-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a15f0a3173a89e99e0e7a9b36c32a0/659_bua-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 735/659_bua-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/401afb51a0e86fa208fe1efb0dca50/659_cuO-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1258/659_cuO-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/eac53cec660d9c8dcb130b8445f5f5/659_buj-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 488/659_buj-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fc037123e358c3336cea1d9d1a3b18/659_1q-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 907/659_1q-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/655ca0a8f4e779c6f31c902017ab27/659_bUW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1523/659_bUW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/6f0ecca3f1eee052cae579885c0dfa/659_gK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2005/659_gK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/fb0aa614e9da3f5774aa3b0170fe85/NTC_0001_0001_B23MHV2LT4_2.pos.DupRate.xls 1750/NTC_0001_0001_B23MHV2LT4_2.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/dffde3a90e496f06c92588f8ea401f/659_egp-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1363/659_egp-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/b6a27e803f31d737a9d5fd483bed0e/659_buj-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2120/659_buj-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/615c7963a84f07d861631681239e4a/659_dRe-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 519/659_dRe-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/e8620b3005c0d0ac3119e59f3f5710/659_ri-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 698/659_ri-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/04cfe8c1a19c765fecb97270a6bcd2/659_dc8-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1407/659_dc8-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/dac8f7f1c45cbb23f078ca748d8999/659_cAa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1355/659_cAa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/c41e3367f465ddecfd1ecb8a528463/659_SP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2063/659_SP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/4240b3b2bbf95096df3c5ed8d5d242/659_ri-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 243/659_ri-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/ffa3088ce9016d247b97b6fedfefbe/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_trimmed_2_fastqc.zip 380/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/9e2ad6cb67d2051a33fe7ce6db041e/659_bTo-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 327/659_bTo-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/f64e67d7314148e649ff082f826295/659_dwi-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 496/659_dwi-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/c780cced17e038b0a59b8a3cb91c17/659_cTi-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 913/659_cTi-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/83faa6601ef3e335fb2216b439b822/659_dES-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1678/659_dES-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/5095ca24cc799e6d6e75cacc570c6b/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 642/659_bTq-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/5888b561f94b776da71dfb4f8e6a8e/659_Dl-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1568/659_Dl-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/e69903b65a5d8a2578175ec374a8de/659_epG-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1897/659_epG-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/f8ecb9039cf7642815fb755f3a8a2d/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.fastp.html 194/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/88e35a756bd3c0213c305e5ecd8d62/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 335/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/a645f2fd5d7aa659e8cf107cd28d6f/659_cAa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 208/659_cAa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/b01a691dc4664e6674ffef8928ab4f/659_SP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1593/659_SP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0e82fd105c363c8146fbf9c779e01a/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 599/659_b4x-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/5ca3da6ca1a7d04e8f464be2554eb9/659_dfA-T1-TRNA-1_B23MHV2LT4_1.fastp.json 89/659_dfA-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/c32b178184364ec0153aae3605ee19/659_On-T1-TRNA-2_B23MHV2LT4_1.infer_experiment.txt 808/659_On-T1-TRNA-2_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/c4c55ca90e35761645cd39c6bea560/659_cwv-T1-TRNA-1_B23MHV2LT4_1.fastp.html 192/659_cwv-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/88ab499682d1deb1a7395b59481c34/659_cq5-T1-TRNA-1_B23MHV2LT4_1.fastp.json 10/659_cq5-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/8b0e50e3ac11fae7d91786c0052032/659_cGW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1464/659_cGW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/2d7294b1353f85f739be9d302c05a8/659_gK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 657/659_gK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/7c2b6fa2fca9a69b420460cf6443ae/659_epG-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2066/659_epG-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/13d5645a6d892224c842e45f26698d/659_dkd-T1-TRNA-1_B23MHV2LT4_1.fastp.html 111/659_dkd-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/67e24fe5d1c9c8bbf1d805557368c1/659_egp-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2131/659_egp-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/3f383dc1d4ff6d35bc7f343e8ad5b4/659_mK-T1-TRNA-2_B23MHV2LT4_1.infer_experiment.txt 806/659_mK-T1-TRNA-2_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/dcf4e6aac46b9e2b6b640590188cc4/659_cRB-T1-TRNA-1_B23MHV2LT4_1.fastp.html 126/659_cRB-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/2c702b6034a5c64e3069855ee614c4/659_cGW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 792/659_cGW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/2b1bc80cbcc667e1281ae599a49854/659_epG-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1627/659_epG-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/a7892890551f53a3a397f9834c8486/659_R1-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1926/659_R1-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/b994e22f6405085a97ea0937191a82/659_dts-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2076/659_dts-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/56055a826e3b928b184ccb9b9920f4/659_bhK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2209/659_bhK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/dddecfed4a6c1f41ac206034711c4b/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 669/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/b8f8c87dd09599a9c5c0311e2153b1/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 666/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/c3ded05fcf9625fb0f97c7f20a3368/659_dES-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1488/659_dES-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/8d422dc01b881ec216edff2e822a07/659_bGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 272/659_bGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/78b950c3d2b3a512cdfc2857b3b8ff/659_epP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2358/659_epP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/af2dd33cd37aaa11ca1a1ea8bd46e6/659_b4x-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 791/659_b4x-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/9be2a9468cb35b04aa7991826cd293/659_epP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 555/659_epP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/44e08ffabc79c14871dc5a8c247cdc/659_buD-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2368/659_buD-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/020c885d0ab59e0b9b1fde350cf8a9/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1711/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6b34c14231cb4181d7c99bef0138f4/659_dXa-T1-TRNA-1_B23MHV2LT4_1.fastp.html 167/659_dXa-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/1334540d571b9d9de1adb3a6c4d673/659_bCu-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1123/659_bCu-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4b015eed4a74f6d5af6c81e68266b5/659_bTo-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2160/659_bTo-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/2610d6a7b09fab87f1c14d6ebd72ec/659_eu1-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 697/659_eu1-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/afae8cac9c76ef9226510535f61f3c/659_Kh-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1942/659_Kh-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8b134615432138199f418443793c68/659_dm4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 701/659_dm4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/0e4997fd94aa3e963d29bd251c43cd/659_cGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1848/659_cGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8fe0ba0c9a78c106799546f9a7c6e2/659_dXa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2259/659_dXa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/0ef3abba45ab7eb357dc2cbf3763dd/659_bUs-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2370/659_bUs-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5b5ae5460b743040ef3b55ee0c251e/NTC_0001_0001_B23MHV2LT4_2.lc_extrap.txt 2038/NTC_0001_0001_B23MHV2LT4_2.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/648abe91c2a16a38e098b2054ae0b6/659_rd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1472/659_rd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/3d2068dda49ec8a4063576a1a8b0b3/NTC_0001_0001_B23MHV2LT4_2_contamination_mqc.tsv 1558/NTC_0001_0001_B23MHV2LT4_2_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/44606a9d3fe87331591f350ef99fe5/659_dKM-T1-TRNA-1_B23MHV2LT4_1.fastp.html 166/659_dKM-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/1354b225241e1502a9325d1ca84649/659_eu1-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 240/659_eu1-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/48e82e7864d8727f6abac88743ba44/659_cwv-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1434/659_cwv-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/066e2a9a9da0faf324db7ef3b71868/659_buD-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1304/659_buD-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/f2c2b7dbdb89fd6e19a6e1a0d1c77b/659_eGK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2306/659_eGK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/5c331e53f83fe0942e341de9998758/659_cfy-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2277/659_cfy-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d9191f5d5e4a32e305fdd2e67f8679/659_buD-T1-TRNA-1_B23MHV2LT4_1.fastp.html 152/659_buD-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/e98ce3822614f0df08656a86c691c7/659_dwi-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 222/659_dwi-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/729b9f9fed7b078aa43bde6e7ae9f4/659_epP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1725/659_epP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/869c2ac497909bb49490319f129be2/659_dHy-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 853/659_dHy-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/08695987b0a142fb2fd1e0f36979e6/659_mK-T1-TRNA-2_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1381/659_mK-T1-TRNA-2_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae1964fa9d2678385b142b0da0b910/659_bGc-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 708/659_bGc-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/ec946d90ad8a32aabfc9f06af4fcfc/659_cRa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2094/659_cRa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/479646141172ed834a062a7743ffd3/659_bGc-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2247/659_bGc-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/8335eb92f18e70ee1cf5fbe7ff4aaf/659_wQ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 80/659_wQ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/b6a7302670b0cf8e8e2efd3daf7226/659_d0M-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 214/659_d0M-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/589b38efad144de71514a3041f638f/659_dRe-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 263/659_dRe-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6dc68ee7fa4419c5bd1a60095d41e8/659_bTq-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2207/659_bTq-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/dfcee4e95125ed32bc59153f7af27f/659_dfA-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1600/659_dfA-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/9510c668a47d73e48d17f1b99b2831/659_ri-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1466/659_ri-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6b9449e6baa3c357b97b3486a40f53/659_bTq-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1822/659_bTq-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/9d864f26593802d4a932ac49efb395/NTC_0001_0001_B23MHV2LT4_1.inner_distance_freq.txt 885/NTC_0001_0001_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/36eb6e6567b0b2494ab205d8bc93f2/659_Dl-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1664/659_Dl-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/3517383a79ac967b4c431ddee0199c/659_gK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 368/659_gK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/533b4dff0df302a6b5cef1d0fcbdc9/659_wQ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1167/659_wQ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/932a285bcc3a3f3257bbdf0d6823c9/659_bhK-T1-TRNA-1_B23MHV2LT4_1.fastp.json 54/659_bhK-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/3216bfeae9ab9e1b01190b3d95106e/659_bNS-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1180/659_bNS-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ec6b8a85a1ab9b9a809d5b64b68504/659_eGK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2114/659_eGK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2a188e39b3400a17c84a3dce6b048f/659_eHw-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 670/659_eHw-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/abdac22d32853140594501ef522530/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 288/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/996e26376923d06dd3f768d98b3174/659_zO-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1169/659_zO-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7ae811fd6b62a62a07449505db2e61/659_6i-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1663/659_6i-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/b555056f30fcebef2c6affdf740f23/659_bCu-T1-TRNA-1_B23MHV2LT4_1.fastp.html 131/659_bCu-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/2364e23eac028796e26e987c563e13/659_eeB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1556/659_eeB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/5e330abe8407990177d7d3e00b7609/659_mK-T1-TRNA-2_B23MHV2LT4_1.inner_distance_freq.txt 902/659_mK-T1-TRNA-2_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/5cb1427259774b8aadfdc872282249/659_c95-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 655/659_c95-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/b36576b561b4e59b9f0c6675a37241/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2282/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/37510451c293f4703b62ddd411f13e/659_1q-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1484/659_1q-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/17ca865f809c576a7d3d73fc186338/659_cfy-T1-TRNA-1_B23MHV2LT4_1.fastp.json 65/659_cfy-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4da470e3c7b8f4d477e74f0baa6c1e/659_Fr-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1510/659_Fr-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/85183fbb9921c1ede5891dc391fe71/659_SP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 324/659_SP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/dc7964ec7f8733893297788de39b9a/659_dcz-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 603/659_dcz-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/51d610a9207c11f9afaa52801e9fae/659_buD-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 634/659_buD-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/122671d3834dbba1bb51fdf213088c/659_djb-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 732/659_djb-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/bf51286851803934278fe11e6c595a/659_b4x-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 503/659_b4x-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6cea08c27160f4f5897e67caf4fc95/659_cwv-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1499/659_cwv-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/42b2f7099496c4960e14f81e4adbf4/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.read_distribution.txt 1514/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/686ec202bee7d4523eb19267aa58e0/659_epZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1908/659_epZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/51a9eb98cd372ce5123a89a9c897df/659_rd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 610/659_rd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/0c0712896989cd8b7e0a133e21d578/659_cB6-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1977/659_cB6-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/1df3255a1610a254b6e3a3ddb71819/659_cAd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 359/659_cAd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b7bc81c9bdc171a7fee2dc77db266f/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_seqtool_mqc.tsv 2004/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/21443bc0a3b65582b2ef4dbdf43152/659_dm4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 893/659_dm4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/119654ac5a7dd4034c2ad1b1f13ee5/659_Wm-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2214/659_Wm-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/a06eaa9da591f2e2b17766a9436ff2/659_Wm-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1445/659_Wm-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/0440265c7f72bd3e33191521a04e32/659_Lx-T1-TRNA-1_B23MHV2LT4_1.fastp.html 130/659_Lx-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/bd20f1ca1ea114681408950de92d6b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1019/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/dc09a7f820ea109d4ad4573ca6913f/659_cWx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1161/659_cWx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/56a33982786ab3e3ad8536039140b0/659_rd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 802/659_rd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4791be551ce7b6e42e45ea3d8d2f61/659_cq5-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2217/659_cq5-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3334a09f4a772e7374cdba4b2d63d4/659_SP-T1-TRNA-1_B23MHV2LT4_1.fastp.json 45/659_SP-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/38b00994446b935596abd80f07fc55/659_Kh-T1-TRNA-1_B23MHV2LT4_1.log 388/659_Kh-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/03efa192a4e256ca11935aab92472f/659_dc8-T1-TRNA-1_B23MHV2LT4_1.log 477/659_dc8-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/01f0962032506086deab5d3dbaff90/659_On-T1-TRNA-2_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1385/659_On-T1-TRNA-2_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/24ea971806b920809b9062142887ca/659_cWx-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2338/659_cWx-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/9157ea5cad13cbbee7cb057b9099ec/659_mK-T1-TRNA-2_B23MHV2LT4_1.bam_stat.txt 1285/659_mK-T1-TRNA-2_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/037d5a2ec4a3705372b828de0085b8/659_eKx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 226/659_eKx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/cfa7fab9c5e983c7684d58e8f8ad19/659_ePR-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 629/659_ePR-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/ef722ac0af7eaa0a267a2b5f11a914/659_dkd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 879/659_dkd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/5965e5f27f1656aa66ae177734ff3f/659_Mt-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1890/659_Mt-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/5ac133b273f4f53a41d219c4c4765c/659_Lx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 705/659_Lx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/fbba2732fff35f66a851bb01eeb627/659_Fr-T1-TRNA-1_B23MHV2LT4_1.fastp.json 42/659_Fr-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/921f81d0ad2270104e2371ef6aeb81/659_bMa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 892/659_bMa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/c11c4f0f2950fa86af762b5f505ffd/659_eGK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 674/659_eGK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/1447ae28d6fb56fe46d6ad918ee185/659_dES-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 723/659_dES-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/a1ea5d135f400f95f2790c0286be6e/659_bua-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2341/659_bua-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/26d112ea6f3e5ad7f143c44ab7e536/659_8h-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1732/659_8h-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/fee2052c33ec9db01f2cd5f77c87db/659_cTi-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1781/659_cTi-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/1686c3f016656ab4f0ca2ef51cc703/659_cRB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1276/659_cRB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/3204248bd53b8e8d9e6565ec0b6ca6/659_end-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 553/659_end-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/dc41939d07c2a8e385a8466f75d0de/659_bIB-T1-TRNA-1_B23MHV2LT4_1.fastp.json 48/659_bIB-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/76b9c545758b76476dc39d84e5a77b/659_bTo-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1399/659_bTo-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ee3d9b6b8703109354dee2a1a96d82/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.Log.final.out 645/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/a941b1f1a6cbfa9eb413f8dc88d6e2/659_djb-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 828/659_djb-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/ffbf8b409db9fafc410a7f92933c36/659_dHy-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1537/659_dHy-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/081f641ecf4317b5c0e8d46612af78/659_cRa-T1-TRNA-1_B23MHV2LT4_1.log 426/659_cRa-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1f237b3e311cf42a4a1a97f178231c/659_b6o-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 204/659_b6o-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/be13b9e6c57bc596d7047ee4a07fc6/659_cfy-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1294/659_cfy-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/8dc3eb45261273481e1e29a302fb66/659_bNS-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2174/659_bNS-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/389693947c957bb5e9f2fc4bc33c34/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 261/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/fda61e4455f68afd938a255d4953a9/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.bam_stat.txt 1324/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/1cf25849ab2a4ec38ba920ecdba924/659_d0V-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1453/659_d0V-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/66a44c7fb33bc9adf34ba8923484fe/659_cRB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 702/659_cRB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/d721a42f138067c9d5bde9fbbed1f0/659_bGc-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1764/659_bGc-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/cdd93138f8d1230396428692da537a/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.infer_experiment.txt 863/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/be5e0270efee0544016468f42e90a3/659_end-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2367/659_end-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/897cc3ebb3022f89c0767cb323a467/659_ecd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 726/659_ecd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/6b71edfceaf2c076fff15854857133/659_cAa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1071/659_cAa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/57e049dce97154a55807c3ae369c6e/659_dc8-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1311/659_dc8-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/81fc72c859884b8310c8cd3a581d0d/659_dwi-T1-TRNA-1_B23MHV2LT4_1.fastp.json 16/659_dwi-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/59589da159b1dfd90d9b277b3741c6/659_cAd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2245/659_cAd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/162792a57ddd2e335352cdbf2d8170/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1602/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/e841eab46077305251083d1f9d8c5e/659_bR4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 908/659_bR4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/abce0da0386aa01ae93421501b2961/659_zO-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2061/659_zO-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c29b84cf216cad65fb09fb8a1e8647/659_eeB-T1-TRNA-1_B23MHV2LT4_1.fastp.html 115/659_eeB-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/da9962c407b211ba29a069e80f2091/659_bhK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1222/659_bhK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f30b81597e5c527558580cac5b65bf/659_cGW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1752/659_cGW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/ca6ca3f1a68d70aa03c6774426fe09/659_bNS-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 818/659_bNS-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/3dc8eb5fea4665fda0a008984736f9/659_1q-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 538/659_1q-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/340ef7be8ab2dbd991a460af03d669/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.inner_distance_freq.txt 946/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/9ff938898004df93bbae6ee3aae328/659_bUW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 951/659_bUW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/7c37b51cedcd1f2a35be78f5b7dfa7/659_cGW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 600/659_cGW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/97c504e69c4adc22060e023ba9ba09/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2318/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/044b42d51e1abb4bacf4b558db8273/659_ePR-T1-TRNA-1_B23MHV2LT4_1.fastp.json 75/659_ePR-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/37f2cae0a19db5d19874a464c77269/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.log 470/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/43ff62620cad11296a36a9ff89bca8/659_dXa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2163/659_dXa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/c204cf80cfe8e8ce5eaf946f6871d7/659_bIB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1171/659_bIB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/8335eb92f18e70ee1cf5fbe7ff4aaf/659_wQ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 176/659_wQ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/ce5c1df107553212659989d22c46b0/659_eeB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 884/659_eeB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/565ca33d33e100893e0afb61166c99/659_ri-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 890/659_ri-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/e021d75a00f5ec6aaad52a7c1bc2a1/659_bTq-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 568/659_bTq-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/039a1f15760f3bc8bbcca631725519/659_cVw-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 855/659_cVw-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/a4e3165f8987d55e0e1c73a3b0dff5/659_Wm-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 202/659_Wm-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/c53a78d9cb91f67cc2492cc21aff0a/659_e0S-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1087/659_e0S-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/a3a526c4ff2f3c4c64a3d1431b612b/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 133/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/dbd3994ded32c7acb2da926f52199a/659_cq5-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 777/659_cq5-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/92b1b190c98653f7c1b0ccc31cb69a/659_buj-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1070/659_buj-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/2235a060c4b7566d5a5dce867c96cd/659_epZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 354/659_epZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/61e5879bc5018286d099c6756ae4f0/659_epP-T1-TRNA-1_B23MHV2LT4_1.log 459/659_epP-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/21c392514f455f15876dac3d70312e/659_bR4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1968/659_bR4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/a413fd952214ee3b975f9c41b5a247/659_mK-T1-TRNA-2_B23MHV2LT4_1_preseq_mqc.tsv 2254/659_mK-T1-TRNA-2_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/cc4000a165b8d24e500c3a48ab302d/659_d0M-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2028/659_d0M-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/472c8ebe4e2e6c1d6f58fb15a266bd/659_dkd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1743/659_dkd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/d720c01c0d703266a1197f001893a6/659_bUW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1240/659_bUW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/13f9167a6b9bc261c70ca56a5f7c42/659_d0V-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1357/659_d0V-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/6834c95e5e175623351ab05c0555a4/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_seqtool_mqc.tsv 2014/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/da33732682ce9c7fa4db3969e5fb98/659_cRa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1903/659_cRa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/a0cd00c4584af18c6dac0247c477c5/659_cWx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 847/659_cWx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/444fce4e4430a0565efe77da5a45b4/659_cIX-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1201/659_cIX-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/4fbfb0ec02bfff92caaf7c691830cb/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2278/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/5063782f41a8f8ef4c28e79586db19/659_ezg-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1032/659_ezg-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/6abe86ed0f0276d4e90b8c16462e2a/659_wQ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2002/659_wQ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/ccd613b9cb6e6308feb65afd0dde77/659_bTo-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1591/659_bTo-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/18f8b7b85cab6682366157298214fe/659_bUs-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2089/659_bUs-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/0d67fc0f7f36074e0805447c3dc881/659_b4x-T1-TRNA-1_B23MHV2LT4_1.log 407/659_b4x-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/6b8b3dc57096f1af9e36f3d19013b2/659_cRa-T1-TRNA-1_B23MHV2LT4_1.fastp.html 157/659_cRa-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/3fb431578a88afbbd9798d583afa72/659_dRe-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 617/659_dRe-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/7b740eb67864fd6664f01333622105/659_dkd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1647/659_dkd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/11d2a046ceee8a05a1b213dd1ab3ce/659_d01-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 549/659_d01-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/73e9abd704cbec3cd44d5bb36627ec/659_ezg-T1-TRNA-1_B23MHV2LT4_1.log 467/659_ezg-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/2f0aaee62338c6bdeaf7aefcdb2c00/659_bKP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2153/659_bKP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/88fd0268a25526bce5e85ea13e1719/659_dcz-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2043/659_dcz-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/58e96b669c4fc4837ffba53cdb7023/659_dHy-T1-TRNA-1_B23MHV2LT4_1.fastp.html 165/659_dHy-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/77f88c39c9acac8f8a80a862a1edf8/659_cfy-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1207/659_cfy-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/aadfaf0c268c4b641f5fc48e3eb27b/659_dXa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1958/659_dXa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/0c1f8ba00704a0e053d5771a111642/659_ecd-T1-TRNA-1_B23MHV2LT4_1.log 481/659_ecd-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/764b59d23365378eac5f1eeebd8947/659_Lx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 257/659_Lx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/c7c91a9f6ccd17556d9e56eb15f411/659_b4x-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1559/659_b4x-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/53da539f0aa8092ce5827d6a926d16/NTC_0001_0001_B23MHV2LT4_1_1_fastqc.zip 1095/NTC_0001_0001_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/a0b65ea4c130dfb554309fee7b6265/659_gK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 945/659_gK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/4decc2c172ae4908ddad4c0933ad5d/659_cGW-T1-TRNA-1_B23MHV2LT4_1.fastp.json 24/659_cGW-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/a7368e4def16305e4bed25a34aa568/659_d01-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 301/659_d01-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/95bd63235dd57342eb66c9b7ee3f08/659_d0V-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1261/659_d0V-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/bf8ad2c7dcf52617f3e9519e8f3e9e/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2266/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1b981f17ea3b395b174c66b18637b5/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1193/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/fdacda98178c9a318d867c74ad3ced/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1125/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/df5f2653522a5cc5360167be05baff/659_dm4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 797/659_dm4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/de31fc4099b0d90e23898a52664b56/659_bUs-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 749/659_bUs-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/8a9b464cf4b0aa7598edd0cb8b9437/659_dES-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 550/659_dES-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/8837cb0ec8502fd27ddf917850e336/659_djb-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1493/659_djb-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/731a79c7ea32500a45fac8abaee054/659_Fr-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1176/659_Fr-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/0ed9f652efd7e38e4bc4557471bc84/659_eHw-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1530/659_eHw-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a06cac084cdacb6534e3461a09ac96/659_cfy-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2085/659_cfy-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/389693947c957bb5e9f2fc4bc33c34/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 262/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/c61f2992b70e4388e0504f2252f0ea/659_zO-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1629/659_zO-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/e0502f8c4ad334ccfeb7f795680779/659_bua-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2161/659_bua-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/84f4519348a0ce77fc24f185ee45c4/659_bR4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2180/659_bR4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/0078784d48dfcae81ce55a3a7751d1/659_eKx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 594/659_eKx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/3f41be45ca15bbd23e9fa8a4e466e3/659_ePR-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1204/659_ePR-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/4146b9578668d47e816ddd789d451a/659_bMa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 508/659_bMa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/ec47464d9c4d340335ae8c9335480d/659_6i-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1471/659_6i-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/8dfda2bba73323e22d8c1605b218e3/659_bCu-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 260/659_bCu-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/be2cd20c9b224487a0678a179150bd/659_1q-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 811/659_1q-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/8f5c243191ea7204c30cc58959585a/659_dts-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1008/659_dts-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/b18eb667826867189d09ad36a1e072/659_cIX-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1305/659_cIX-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/b6cb056646d016c8d2093e0f226352/659_eeB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1843/659_eeB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/d1a21afc442fb262fc15433c9cada7/659_cRB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1114/659_cRB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/db9744b8584b5a847550ef1b3fc0c4/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.read_distribution.txt 1505/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/5b360bf0371ea1ec8208dc3a571393/659_bIB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1346/659_bIB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/8e748b8ccceee1d9f8acd84a949455/659_dES-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1143/659_dES-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/3bdc09ed41bfca75b4911f100fb171/659_d0M-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1644/659_d0M-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/04350f4982686acde902ab6e88232d/659_cTi-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 817/659_cTi-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/fe353bf0b8df75172bc9dd49a4e8b6/659_cwv-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1233/659_cwv-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3334a09f4a772e7374cdba4b2d63d4/659_SP-T1-TRNA-1_B23MHV2LT4_1.fastp.html 141/659_SP-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/c48d29e9bdb05478ae1b249fc540d3/659_dc8-T1-TRNA-1_B23MHV2LT4_1.fastp.html 184/659_dc8-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/edd8719fa7a4abef849fbbe6272b80/659_cWx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1805/659_cWx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/15080f727a530d0eac32bda5381399/659_bGW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1315/659_bGW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/f63b4f26b789a0387d81e1875f0281/659_c95-T1-TRNA-1_B23MHV2LT4_1.fastp.json 58/659_c95-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/c906030a53a0e200eff790aba38b32/659_dkd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 591/659_dkd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/d783a8c0c53074f1b52c577414cf0c/659_dfA-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1700/659_dfA-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/88fd0268a25526bce5e85ea13e1719/659_dcz-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2139/659_dcz-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/35ba1d9a20b3adc152750d1d1dfb83/659_cAa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1739/659_cAa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/50997ba523339de312b7eb4929faf2/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 862/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/fc651f2c3769c08a2a356a8475ca35/659_bGW-T1-TRNA-1_B23MHV2LT4_1.log 434/659_bGW-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/fbba2732fff35f66a851bb01eeb627/659_Fr-T1-TRNA-1_B23MHV2LT4_1.fastp.html 138/659_Fr-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/ce7acae9bc6c4f40652c56ad88edb2/659_cTi-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1010/659_cTi-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a9ef337838c273057a74f608268c67/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.Log.final.out 658/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/f03c3b08452d19f88ec8ed0d228c45/659_Wm-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1927/659_Wm-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/df875ee88879c6c179b63a0db10251/659_cB6-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1807/659_cB6-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/0440265c7f72bd3e33191521a04e32/659_Lx-T1-TRNA-1_B23MHV2LT4_1.fastp.json 34/659_Lx-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/5697514cc9047b079f5d4ea0b77a18/659_cB6-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1907/659_cB6-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/96f4567ee6b635f9f50dc8fdf93fd0/659_cuO-T1-TRNA-1_B23MHV2LT4_1.log 395/659_cuO-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/eb8f0dc5524f00ba6243b451dee3e8/659_epP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1437/659_epP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/f40cad185b3a0aede13487a02b022d/659_eu1-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1103/659_eu1-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ea54c0da2b8c8a43a27871358e40d1/659_cYf-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 297/659_cYf-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/64ea91dba28df644343f289a9613de/659_Dd-T1-TRNA-1_B23MHV2LT4_1.log 468/659_Dd-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/6c982c487e00e8a995279354e23b6d/659_eKx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1458/659_eKx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3eee3d9824529eb3041ec304d98962/659_gK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1612/659_gK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/7d82ad8e25629a270ae47f2f11e988/659_cwv-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 925/659_cwv-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d33bc63f9d672642cc5d74171216f1/659_8h-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 580/659_8h-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/b55e446a1e8ce19b209f8b1abbda75/659_end-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 929/659_end-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/cb6cab874c95a4c7f591754e9f183d/659_buD-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 292/659_buD-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/8e08babb03f22aa804f24c05b242aa/659_Kh-T1-TRNA-1_B23MHV2LT4_1.fastp.html 100/659_Kh-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/22f4bef08999d3f7b391a03146cc4f/659_dts-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1393/659_dts-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/5578073fc1808060e25faa5cb60bdf/659_cGW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2040/659_cGW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/9df453a35f0bee7b62ff99d2415cc1/659_epP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1057/659_epP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cb96c45f2c3dde7736b17bb855dd3e/659_ePR-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 316/659_ePR-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/09a7ccdbf8829ba89e3226ddfe0210/659_dkd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1838/659_dkd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/752e5c41d89e61fa3372c7b8ec7982/659_buD-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1881/659_buD-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/35a5591c007497d28e1c7e0b381c95/659_cuO-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1833/659_cuO-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2bd0dc3ef6f440587bf27c5bcbc72e/659_cVw-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1524/659_cVw-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d86e84f8c63e5f442612805121dcc4/659_ezg-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 339/659_ezg-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/cf56440edc0109e15d2c4b5d935e00/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 956/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/a3c0450fd09ff0c353ac98ca8b4c22/659_ri-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1946/659_ri-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/e2901fe36ba658a7f56e3e575d3216/659_cfy-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1776/659_cfy-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/dc2fc968d75ad7779dff62e87d6d8e/659_dRe-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2243/659_dRe-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/abdac22d32853140594501ef522530/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 287/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/352b23366ffc1a2594dd5e8f0a030d/659_dfA-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1408/659_dfA-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/11f8d5effbf33004086ffb6eef7896/659_dcz-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1563/659_dcz-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/7fb54f9ef6c97854f6384561d84261/659_bUs-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1214/659_bUs-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/fcfd264b1b2e2c2db62c007c489334/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2371/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a00fcc234406aa9c84181fbe525d29/659_d0M-T1-TRNA-1_B23MHV2LT4_1.log 396/659_d0M-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/c8df569ac825c286a52839a9bf2cb9/659_R1-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1734/659_R1-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b7718148e762dca62dec2ce26f3bdd/NTC_0001_0001_B23MHV2LT4_2_2_fastqc.zip 1098/NTC_0001_0001_B23MHV2LT4_2_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/46df9a2220cf7ec57118f6d34762c7/659_bUs-T1-TRNA-1_B23MHV2LT4_1.fastp.html 182/659_bUs-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8c014e8ffa506bcf75c7d249174dc7/659_On-T1-TRNA-2_B23MHV2LT4_1_trimmed_1_fastqc.zip 321/659_On-T1-TRNA-2_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/211e402813dbfad1f6329ac525fa3d/659_dkd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 219/659_dkd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/5674af88355e5f1ec28e47a1815e72/659_cRa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1519/659_cRa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/03a2a7995f1f9a3967d4a5989e928d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1785/659_bTo-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a4a4ee4aa17fd9e86057d5d815d6d1/659_ri-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1562/659_ri-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/bdde0a0ea2b73bb38f9e0eacbf0c2c/659_cTi-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 278/659_cTi-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/0229a4902d9aaa83919c5ce857667a/659_egp-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1936/659_egp-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/a89875553692cc5f93951e33a7dbc4/659_eeB-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2132/659_eeB-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/1faed2f99c589655264f9962558d97/659_dHy-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2356/659_dHy-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/b81a344013ff70d50959343ccd2572/659_cB6-T1-TRNA-1_B23MHV2LT4_1.log 449/659_cB6-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/1cc2fbb596a219f2270ee987d8e9ce/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1128/659_dRe-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/51a9eb98cd372ce5123a89a9c897df/659_rd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 706/659_rd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/aa20c5a8c20088de0a599a60a7d4a3/659_b6o-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1067/659_b6o-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/8dc3eb45261273481e1e29a302fb66/659_bNS-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2078/659_bNS-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/3898cebddd365113d48b2cc2b98608/659_e0S-T1-TRNA-1_B23MHV2LT4_1.fastp.json 17/659_e0S-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/0b8114c765ca0332d734fd654bc69a/659_cIX-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 635/659_cIX-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/49460d30cee29498a312df958e42ef/659_eHw-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1723/659_eHw-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/a1507ce064e6545c22543888cbe004/659_dES-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 304/659_dES-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/f9f8e329e57f1ca2f9dd8af3d73975/NTC_0001_0001_B23MHV2LT4_2.Log.final.out 598/NTC_0001_0001_B23MHV2LT4_2.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/af43e1eca12b2eafea52c65890905d/659_R1-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1350/659_R1-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/6ac13ff4bdf53435f73571967ab640/659_eeB-T1-TRNA-1_B23MHV2LT4_1.log 403/659_eeB-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/e01ec207608ee0929388f14a17b738/659_eGK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2015/659_eGK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/3ac9ec80eaacdc51b778c12b5b4181/659_d01-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 909/659_d01-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/7edc8ed6e75a5cef964f85558c6ead/659_dXa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 812/659_dXa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0dc6cd9b9b745b6e151956c5bf4bb1/659_bua-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1018/659_bua-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/e6909e55371168d3d914d0e2e9b7be/659_bGW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1027/659_bGW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/943d03407de6869f3313aefc77a87b/659_d01-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1579/659_d01-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/3c872322f7758ff61a858634d9f2f7/659_ecd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1298/659_ecd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/dbaa3b95583dd7a11544d4334e9fa5/659_8h-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1444/659_8h-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/f57045e647c87a68cfc2ef9be0b9ad/659_b4x-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 235/659_b4x-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ad987b92c7e219361faf0447c924ef/659_Wm-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1065/659_Wm-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/6d5e5238a9727becfdbf52bc277f15/659_buj-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1640/659_buj-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/038793c4271f70d12148f3aa111087/659_dm4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1853/659_dm4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/3fb431578a88afbbd9798d583afa72/659_dRe-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 713/659_dRe-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e8609ce29f0151a756a3d0ab34a059/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1413/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/6f0a75483532f1ec55aee62a2cc2cd/659_bUs-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 941/659_bUs-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/c17719b251d2865b69079a36b04b02/659_cB6-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1526/659_cB6-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/6ae385bd76b81b57d2eba27dfd07b5/659_d0M-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2220/659_d0M-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b98f8310acc94b822faec50a5496f8/659_dfA-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 376/659_dfA-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/de91ae38ad8a47d8ae353965be6809/659_bKP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1142/659_bKP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/543a4b626e9bdcfb9584c302d994e6/659_cYf-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 615/659_cYf-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/3ba91837eb91c416b4946eb43bb974/659_bTq-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2303/659_bTq-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/a9ea27c0163745517a11fe353b11ce/659_Dd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 343/659_Dd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/371cd13951048623f0b55018376041/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 954/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e3c0e3376886e87a12ef9b339ae337/659_R1-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 199/659_R1-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/4ce4413e960faf9ea38818754bcab6/659_Mt-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1609/659_Mt-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/0d67dff87d6c5050d9ca1997ced295/659_bMa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1852/659_bMa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/74f958517c09b7f7eba16311ca18af/659_e0S-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 689/659_e0S-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/6f4800e96a7b964f4c1ef151aead1f/659_djb-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 310/659_djb-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6275cd59aad633efeff86f3b74d1d2/659_dm4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2045/659_dm4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/92e591d4af257f31dc84ada56b0307/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.log 482/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/79ff560e472718a2b9b15be749550f/659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1884/659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/28a94f0ccb3fdcb88082a2f5cce61b/659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1880/659_bKP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/9ce3c311a4fe407f279305eb473cfe/659_ri-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 794/659_ri-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/470ffee2cdb903d66013efd4806d21/659_c95-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1606/659_c95-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/637d667f340953e12d4c1c9fec0f23/659_djb-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1687/659_djb-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/8dfda2bba73323e22d8c1605b218e3/659_bCu-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 259/659_bCu-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/a01add54c002eee44505dbdfa8dc8f/659_6i-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 512/659_6i-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/94a4803976cc7a9c083e64e7afde35/659_Fr-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 838/659_Fr-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/82da4681d923765f0c592e61cdbc7e/659_buD-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1788/659_buD-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/804a8a4288d8c8f75cb2d6f600bb34/659_dHy-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2177/659_dHy-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/532d5cb4c66b4ce05cd73ffba5bc39/659_R1-T1-TRNA-1_B23MHV2LT4_1.fastp.html 101/659_R1-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/2235a060c4b7566d5a5dce867c96cd/659_epZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 353/659_epZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/6b34c14231cb4181d7c99bef0138f4/659_dXa-T1-TRNA-1_B23MHV2LT4_1.fastp.json 71/659_dXa-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/828677b5c286419430c29a599a1608/659_d01-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1963/659_d01-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/0b8114c765ca0332d734fd654bc69a/659_cIX-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 731/659_cIX-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/bc062d4a07fcb36798b25cb03e64f1/659_bCu-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1859/659_bCu-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/ff6963d79cc89cb00f8a8b38fd19d5/659_Lx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1474/659_Lx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/a645f2fd5d7aa659e8cf107cd28d6f/659_cAa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 207/659_cAa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4048e242840407187062df6d297d78/659_cAd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1135/659_cAd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/df54451f1fd23b751966d0945d43ab/659_bua-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 927/659_bua-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/3236f42ff200475c55816e11b09cc3/659_ri-T1-TRNA-1_B23MHV2LT4_1.log 411/659_ri-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/d8/36695c7bc12a9fd69ff3f99ce8fbab/methods_description_mqc.yaml 1/methods_description_mqc.yaml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/268f68e3e47fc4b161f2b56e18df9e/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 837/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c3d94b74ed23c6372969acb83a53a2/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.pos.DupRate.xls 1820/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/2253d49f9d31216dff01696cb80f9c/659_dfA-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1999/659_dfA-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/fe6cea5b3c75426174666ac680ac13/659_rd-T1-TRNA-1_B23MHV2LT4_1.fastp.html 129/659_rd-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/7aaa0627bf7c9c180fb6ec4ddb3c0c/659_djb-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2150/659_djb-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/8f4fbd8506667900d18c7a5d58da89/659_bTq-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1436/659_bTq-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/56691df122961d59526c6adbb254d5/659_ri-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1109/659_ri-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/6634dbd705cadf9d16d88122506ce4/659_djb-T1-TRNA-1_B23MHV2LT4_1.fastp.html 168/659_djb-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/dfaa01c6cccee1107c5f1347f8950c/659_cIX-T1-TRNA-1_B23MHV2LT4_1.fastp.html 156/659_cIX-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/2ab5b1760f687bc45efc3d5bf41e1c/659_Dd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1238/659_Dd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/3f2d20b9a2cc3ea164dd50e775e977/NTC_0001_0001_B23MHV2LT4_2.fastp.html 118/NTC_0001_0001_B23MHV2LT4_2.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d1816a50be5d370f0f620b590d4f07/659_Fr-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1314/659_Fr-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/1d71e43dab9279822e0215d6c5334d/659_dKM-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1291/659_dKM-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/d0b17bea0134311a44458b2c1f5ffc/659_cYf-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1384/659_cYf-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/120f4057dea44448e90a08b91267c8/659_bua-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 289/659_bua-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/a53a37a9a80e4054fe7e7d3c720a71/659_bGc-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 531/659_bGc-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/f669963724f6ad8fe566366d04e6c9/659_epZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 667/659_epZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/83b557eb94c33ba58bbc23a51b22a7/659_zO-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1031/659_zO-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/8d422dc01b881ec216edff2e822a07/659_bGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 271/659_bGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/b3d99bf4178eb1456cc771c559467a/659_eeB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 692/659_eeB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/db87e9bd93ee9891c2b6ed50db4acf/659_eeB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 788/659_eeB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/26453a6d2832b276164e125c81ec3d/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 841/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d4e4177185ef2ed8b7ce363bbb52cc/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2195/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/f9f8e329e57f1ca2f9dd8af3d73975/NTC_0001_0001_B23MHV2LT4_2.ReadsPerGene.out.tab 694/NTC_0001_0001_B23MHV2LT4_2.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/2aaec6c188266886eebe72b7b90192/659_bhK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1589/659_bhK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/37bc4fae3229c2395b74f3eca61f4c/659_8h-T1-TRNA-1_B23MHV2LT4_1.fastp.json 3/659_8h-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6dc68ee7fa4419c5bd1a60095d41e8/659_bTq-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2111/659_bTq-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/b6a7302670b0cf8e8e2efd3daf7226/659_d0M-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 213/659_d0M-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/06df2bc6b885246d6b07a43130aec6/659_bGc-T1-TRNA-1_B23MHV2LT4_1.log 435/659_bGc-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/45562614dc25869deb9d2a59c6f979/659_mK-T1-TRNA-2_B23MHV2LT4_1.junction_annotation.log 997/659_mK-T1-TRNA-2_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/2be8c45d6e3bec43c775ad03b30bd6/659_eu1-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1369/659_eu1-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/ddd556668fe0905588b498f6e09116/659_end-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 338/659_end-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5348d07bb4973b4ac8c624f56c8007/659_cAd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1964/659_cAd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/78059fced32892d49bd1e151dc8bc0/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1050/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/4a5b9d77169437a4f6bf6e0b881322/659_dts-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1971/659_dts-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/3a9ea559c674b4966b1ade08f998dc/659_cfy-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1604/659_cfy-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/f75c7c8bc92a19b5e1318d89c9e4bf/659_end-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1309/659_end-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/fc408990cea65d0ea6f688ae6616c3/659_bTo-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1496/659_bTo-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/60f7c0151ed01dc509e2ce8aad116b/659_dXa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1768/659_dXa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/7d58292b04b77fa462c62ccf553142/659_cwv-T1-TRNA-1_B23MHV2LT4_1.log 479/659_cwv-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/5095ca24cc799e6d6e75cacc570c6b/659_bTq-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 738/659_bTq-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/633a10c5c60df8f1e757cc5f597b00/659_cVw-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 950/659_cVw-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/a2a771c1f6c9400adc672faa7d27e2/659_cGW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1656/659_cGW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/53da539f0aa8092ce5827d6a926d16/NTC_0001_0001_B23MHV2LT4_1_2_fastqc.zip 1096/NTC_0001_0001_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/7e5e45776fe6dff7ade0524d6ff2b8/659_dc8-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1210/659_dc8-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/c1bf133dbc84b9362161a9ca3e61a7/NTC_0001_0001_B23MHV2LT4_1.infer_experiment.txt 789/NTC_0001_0001_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/4cf89bb6815d0fc7dfea6a536a2303/659_bhK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1789/659_bhK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/788a83bb7ff30e613314f754b12197/659_eGK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 962/659_eGK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/08474c3494bb835d0068a5101fff04/659_epZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 536/659_epZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/8089b30d8a7975c3d8a0a55f633f8b/659_d01-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1673/659_d01-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/e215dc2e9306742f0e04881fbb80d5/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2342/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/33dfdcb04cabdffdd984f83fc736de/659_8h-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 195/659_8h-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/6a4e70f6ad7787dbdbb00b9dedd65a/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1130/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/16b6c10a8f30b29faebf0641c24667/659_cYf-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1863/659_cYf-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/dd6e6a5b3c3ca7efdce7dbe94f1031/659_dQk-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2222/659_dQk-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ebcaa5d34a50237538881d2a8219f1/659_cRa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 523/659_cRa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/8b7f7b24aa1c51486ec429a2f1e60e/659_dts-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1155/659_dts-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/037d5a2ec4a3705372b828de0085b8/659_eKx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 225/659_eKx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/db5627de0baa0469e9bd1c09478c72/659_cIX-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 561/659_cIX-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e92b08dd3ece01b0c3ae6653c7d208/659_eGK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 866/659_eGK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/f6d051e9d9db05e9a2b010a71522d9/659_rd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1377/659_rd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c999aaa74076b07ed329f48f2dc6e2/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1029/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/374056476ef3849f9f17abc0603802/659_R1-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 677/659_R1-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/18653f94f7a32e3dda42b1c4196391/659_bua-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1245/659_bua-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/0e060ac1f308281fd3009c13cbadb4/659_egp-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1555/659_egp-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/f8c5ecb47737e9ebd8630366beab3d/659_dcz-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1947/659_dcz-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/cb1d7675833f07bcc78935e2feca6b/659_cVw-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1622/659_cVw-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/9a863104753956c2eb3a883086574c/659_bCu-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 803/659_bCu-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e7fc275679be9dea58c0f3c97a3a0c/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.junctionSaturation_plot.r 1710/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/f11e21301ff4a5a3d86e768e4cf736/659_1q-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1773/659_1q-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/3cb12788709d226522ca2995d5449d/659_eeB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 499/659_eeB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/18e57ca05ebe14318348ef758e605d/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.junctionSaturation_plot.r 1724/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/f56f84a4b3601a9d250beb07068b4d/659_rd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1953/659_rd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/35b8f9ac26d69dea46331463f80854/659_bTo-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2255/659_bTo-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/14375fa6496d074024137d8ea0d713/659_6i-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2316/659_6i-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/e2b003cd1adab6aaf5afed66d5e621/659_bTo-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1158/659_bTo-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9b04a7467638a284c6f82cad8b2258/659_dts-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 534/659_dts-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/f0cad20a7047d38f17b3d3f4a03e5d/659_cWx-T1-TRNA-1_B23MHV2LT4_1.log 466/659_cWx-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/5fe11ad5feb382e9ea0fcf1229e6ca/659_Lx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1121/659_Lx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/d93247c9b045fecb493ce4bb6bfb32/659_dQk-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1933/659_dQk-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/7885b41d724b1a2532284a17225ef2/659_cAa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2123/659_cAa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/785129f928bbba76803409e87047fa/659_dkd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1084/659_dkd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/c3e4ed68dfa0a20ced37f9e4bb348b/659_cIX-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1882/659_cIX-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/0078784d48dfcae81ce55a3a7751d1/659_eKx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 690/659_eKx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/5d69d5585f43e68c8b1c8386ee8a92/659_Dd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1718/659_Dd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/d4bf742b0a39da3a41f688d703271c/659_rd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2319/659_rd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/9c59c1c830012de819c9341f8f2bdd/659_cRB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 894/659_cRB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/238a22978f61cc09c4ed957a0645b8/659_dm4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1566/659_dm4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/5901721d3b7ca75c6b9aefac49cd16/659_rd-T1-TRNA-1_B23MHV2LT4_1.log 417/659_rd-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/1a17c17f975dd669dc904d975258a1/659_R1-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2021/659_R1-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/0a09d832cca15b4dcdf1a7865bc68f/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.inner_distance_freq.txt 942/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/d90b919a2c1a0587dda49ff8180092/659_d01-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1152/659_d01-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/528623f8a43d5f3eb4e95dca81a4af/659_eu1-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1657/659_eu1-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/1bb4d099091a69afb577d2822fe539/659_zO-T1-TRNA-1_B23MHV2LT4_1.log 439/659_zO-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/46234d50204a499bc4a9256ca4bf7f/659_cuO-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 874/659_cuO-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/127e42dd18ebf2c4609c9f00ab9118/659_cq5-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1257/659_cq5-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/ad4532c32f96c6e3c10380cbc21dbf/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1862/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/87d8e73e2e689ae4ac02031b04f50d/659_cuO-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 491/659_cuO-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d14c4d471ddbb8a52e93651321faa4/659_Dd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1810/659_Dd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/22614c547ee6cf927a2be7b10d0e39/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1915/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/580911f77c666b353cc1d45eb1db9d/659_egp-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 230/659_egp-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/43608051cd8d51532f1e594bd1355a/659_bNS-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 285/659_bNS-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/0aa7b16e000b21e11775702199ad35/659_dm4-T1-TRNA-1_B23MHV2LT4_1.log 415/659_dm4-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/9ed237a5c08ea74ef5231c58215a58/NTC_0001_0001_B23MHV2LT4_1.fastp.json 21/NTC_0001_0001_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/736c39efd78e39fc7d41560daefc91/659_Mt-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1316/659_Mt-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e4de7f81f3f6e8798c34f8509ef098/659_bTq-T1-TRNA-1_B23MHV2LT4_1.fastp.json 84/659_bTq-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/053b34f8eec5084e9e61dd706af213/659_dKM-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2345/659_dKM-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/6aa57e87a97b7160d81b3b39decf88/659_mK-T1-TRNA-2_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2325/659_mK-T1-TRNA-2_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/ac508085309407e1fec0008282eeca/659_dc8-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 573/659_dc8-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/79d59e57ccbec8f7cbe080034fa12a/659_eKx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2034/659_eKx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/4859e67c202dbf70dc1814b63e11a6/659_d0V-T1-TRNA-1_B23MHV2LT4_1.log 397/659_d0V-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3416c1c94d858f135358c36017add6/659_Mt-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 282/659_Mt-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4656fece1aca9202e38b2b6f6aca5a/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 860/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/785b34fb9ba1746ea605d04f3397f7/659_bR4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1389/659_bR4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/0e80fcba0359a557ee4183ce1c17cc/659_bhK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 926/659_bhK-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/3343fd7f527311b7b7119adda073f1/659_6i-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1116/659_6i-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7e09804cc26915f29a63cea6258286/659_mK-T1-TRNA-2_B23MHV2LT4_1.Log.final.out 614/659_mK-T1-TRNA-2_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/e84c718ef9da587e79272417052b66/659_ecd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2365/659_ecd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/48d7d69166def3380912c112cd4b99/659_d0V-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2221/659_d0V-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/15f6082ab15c21f8a02d3e491c82e0/659_1q-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1331/659_1q-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4b015eed4a74f6d5af6c81e68266b5/659_bTo-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2064/659_bTo-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/641db2e50e778fa53466e66d02df30/659_dXa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1165/659_dXa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/55cb11a2dd66b989d26fdf2260e311/659_cfy-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 625/659_cfy-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/07a7f60d9c76d2eaec40c3a8ae4754/659_Kh-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1731/659_Kh-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/98f105331b597f9aa67a25d39b8734/659_cuO-T1-TRNA-1_B23MHV2LT4_1.fastp.html 107/659_cuO-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/3455dad43b449be75cc8c22e03a3af/659_dXa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 308/659_dXa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/6599b8602e3039e280572c677421f1/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1409/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/e41b906476fc805ae6c1d9f8953ab9/659_ecd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2302/659_ecd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4acdcbd7c5141fff711d41e6f5a029/659_ezg-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1192/659_ezg-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/3195e5c3dbfb9ed2aaf4fb1b20a21d/659_6i-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1855/659_6i-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8b134615432138199f418443793c68/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 605/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/4d5577592eacb3ace9b0ab8c55e9f5/659_dXa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 719/659_dXa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/c9034d9561c75cca75d20d7b7a6253/659_bMa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1470/659_bMa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/14f74903d9a3641f10fbd68efa847c/NTC_0001_0001_B23MHV2LT4_1.md.bam.metrics 1845/NTC_0001_0001_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/01b3b29f7b2583f185960f28878140/659_b6o-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1351/659_b6o-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/f1d7241d791e6e8488181c02b80083/659_bNS-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1780/659_bNS-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/3c057af09f5c44fc97102d67fece07/659_dKM-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 306/659_dKM-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/214881993834daf9c131736f36c596/659_cRB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 510/659_cRB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/650e727c634fc010112d82a7e47005/659_dm4-T1-TRNA-1_B23MHV2LT4_1.fastp.html 127/659_dm4-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/821cb18ed9ab379b173d19f2812c7b/659_bUW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2016/659_bUW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/be1171da2518339985fc184511382e/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_combined_fusions_arriba_visualisation.pdf 2363/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/cfa1d74d47d9d86bc05d00f93a003a/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_preseq_mqc.tsv 2263/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/89342f9150d6179c80c1273bd30fca/659_ecd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 351/659_ecd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/5277264b5c867fa69adaab58f8f14b/659_wQ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1533/659_wQ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/3c939c41cc48ac4be3ed0f1fda048c/659_bGW-T1-TRNA-1_B23MHV2LT4_1.fastp.json 46/659_bGW-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/bd06fd3e53731ce19ea81bbba3bb27/659_ePR-T1-TRNA-1_B23MHV2LT4_1.log 430/659_ePR-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/15f7d615690c5e02da7a08acc5f63e/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.ReadsPerGene.out.tab 750/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/58de3695305e25c581680c373c8c03/659_ecd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1783/659_ecd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/5b6244ac0271aea817e79ccb3c11d4/659_bTo-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1696/659_bTo-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/29813b8d3ee724fab9ee2f0b8e483b/659_Mt-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 743/659_Mt-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/91d78a6f6050cf2413a0648432d42c/659_end-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1801/659_end-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6842875298ce31afa1d8e7133bb326/659_1q-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1427/659_1q-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/619562d269c18e2209e74d20618389/659_dRe-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 809/659_dRe-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/d3d61f2e42a01379ffad8de24b8ad0/659_ecd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1491/659_ecd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/c85c8f88c68a9245bb400d7eebe6e2/659_cq5-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 210/659_cq5-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/bbcaa84f44c89652b5edc57f4c65ff/659_cuO-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1076/659_cuO-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/c097bb86a7d77b402ef9a9df3f080d/659_Dd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2007/659_Dd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/ca6141785511cb2b0e88aa84fb6f89/659_Mt-T1-TRNA-1_B23MHV2LT4_1.fastp.json 43/659_Mt-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/60be01fde72c9a0f5ad7df3c2dc093/659_Mt-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1976/659_Mt-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/774418d2f030b7c68be823baa18eef/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 548/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/afad0bcb865f76503f0e1cf0852741/659_cfy-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 547/659_cfy-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/4b8838c12bcf47d49360f38ff4a021/659_cVw-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 663/659_cVw-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a9ef337838c273057a74f608268c67/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.ReadsPerGene.out.tab 754/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/46bb859c35b2d7163e3e6b6409985d/659_dcz-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1659/659_dcz-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5655556fde504f1d666746c20f0882/659_bUW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2361/659_bUW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a5561d065838d6c7c32bf1c82ad910/659_bKP-T1-TRNA-1_B23MHV2LT4_1.fastp.json 49/659_bKP-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/3c24dad002f5bd2b1fbb018da9746b/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_2_fastqc.zip 1242/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/18f8b7b85cab6682366157298214fe/659_bUs-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2185/659_bUs-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/e8c9f9f3a3916ebdd0aa3aa1ecd38d/659_dQk-T1-TRNA-1_B23MHV2LT4_1.log 398/659_dQk-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3698e7e1cc28fdfd6e8841144c115b/659_epG-T1-TRNA-1_B23MHV2LT4_1.fastp.html 173/659_epG-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/bc1aec29435592091ae05cb3cdc986/659_ePR-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1778/659_ePR-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/886ceeef7186c4479c551f49864c80/659_Dl-T1-TRNA-1_B23MHV2LT4_1.fastp.json 28/659_Dl-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/38b3c8ccc9b5ee2e1e030792c24068/659_ezg-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 747/659_ezg-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/83b47de9e02e2c317b009a5a880bfc/659_cwv-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1014/659_cwv-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/8b8194896f5d96d7a564b09c29dc81/659_cwv-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1800/659_cwv-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/246eb1230969e83605eecd3581d4a8/659_gK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2189/659_gK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/efb3facb7c4720a0545295894c9ec6/659_wQ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1620/659_wQ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/727927f3e026fae7621a4f2ff173e5/659_b6o-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 967/659_b6o-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/6b8b3dc57096f1af9e36f3d19013b2/659_cRa-T1-TRNA-1_B23MHV2LT4_1.fastp.json 61/659_cRa-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/8953730ebd3b00aefe5c6c7d815084/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 151/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/1de5313dd3185af516614de411501f/659_d0M-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1077/659_d0M-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/ec9c4cb4abb31c00eb50f6d779032f/659_bGc-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2055/659_bGc-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/9006cf6387ab03db97ee29c346da02/659_eHw-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1433/659_eHw-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/30eb1a40645601b2d401a333f1c7b5/659_8h-T1-TRNA-1_B23MHV2LT4_1.log 387/659_8h-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/08971e964e5c078c48f023f11868f1/659_e0S-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1840/659_e0S-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/86353720cdc21e51cb2d4f97c53fb0/659_dES-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 819/659_dES-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/1a308742dd8111b4837f267520b42c/659_ri-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2234/659_ri-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ea0a173f40600bd04b7f64e2915559/659_8h-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2116/659_8h-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/7e3fa0ceeffd6be59d25a5aaed855a/659_bTq-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1698/659_bTq-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3d48a07ff4884fb901e774e5ff58c8/659_Dd-T1-TRNA-1_B23MHV2LT4_1.fastp.json 82/659_Dd-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4abea85dc44f18325558993e7ee234/659_eu1-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1849/659_eu1-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/a506375759283e5a1a94ffc2c18d6e/659_1q-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1962/659_1q-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/1354b225241e1502a9325d1ca84649/659_eu1-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 239/659_eu1-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d2c64481f0775240e92caf8e8000cf/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2086/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/3a0e865eea9f542db1aa814ab5f3c8/659_cRa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2357/659_cRa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/120f4057dea44448e90a08b91267c8/659_bua-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 290/659_bua-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/d3e59120b44e058f2fce0cf1a3469f/659_eGK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 314/659_eGK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/66b00a446888bd08d1ef9690319e53/NTC_0001_0001_B23MHV2LT4_1_contamination_mqc.tsv 1557/NTC_0001_0001_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/785cad82815fb1185eb0d20d6c5f9e/NTC_0001_0001_B23MHV2LT4_1.Log.final.out 597/NTC_0001_0001_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4048e242840407187062df6d297d78/659_cAd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1136/659_cAd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/83617dface634a957e90aeafdee07f/659_eu1-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1561/659_eu1-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/e3c96d6b5ef8c516feab49cfe8c4f0/659_1q-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1224/659_1q-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/a30572dea4a112632006769b028dca/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 611/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/f70859c7e17a16c54e38ab35f0724a/659_dfA-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1219/659_dfA-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/948c266572b5ffb877484bc783259c/659_cAa-T1-TRNA-1_B23MHV2LT4_1.fastp.json 9/659_cAa-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/c650c80f39c2e6bfb18f07647d27e9/659_bCu-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1283/659_bCu-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/13257f5ae6487593e390043119c8e9/659_cAd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1865/659_cAd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/c89bf5d7a2d30ac9c827a57688ad7b/659_8h-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1636/659_8h-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/2f0aaee62338c6bdeaf7aefcdb2c00/659_bKP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2057/659_bKP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/019f42cdec2d058dda3b1f6e20fb6b/659_eKx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1554/659_eKx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/1a104c56e2cc49cba8912836482470/659_ezg-T1-TRNA-1_B23MHV2LT4_1.fastp.html 174/659_ezg-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/247137cab32aeeb24b1f3dd8e6795b/659_b4x-T1-TRNA-1_B23MHV2LT4_1.fastp.html 119/659_b4x-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/734564fda41ea8ae735ba28dfa65d3/659_ecd-T1-TRNA-1_B23MHV2LT4_1.fastp.html 186/659_ecd-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/bef192bef306094245166e06a9e265/659_epG-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2366/659_epG-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/3c5c397f2448851233023901deb763/659_d0M-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 684/659_d0M-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/be1b76e8ed57ae7372897a9588ab87/659_bGW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1411/659_bGW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a5561d065838d6c7c32bf1c82ad910/659_bKP-T1-TRNA-1_B23MHV2LT4_1.fastp.html 145/659_bKP-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/b3b1ebfdf58fcf033bf1387c70a293/659_eKx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1841/659_eKx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/a99f1e48816a7bb0f6a8638234c22e/659_bua-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 532/659_bua-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/667926d4fb2f692c2979ba163e6b40/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1891/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/8dbb0d2d35f2cde512761bdb533422/659_buj-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 205/659_buj-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/4290be71e05876f182b6c37f1641be/659_dfA-T1-TRNA-1_B23MHV2LT4_1.log 469/659_dfA-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/ea8abad8386357a3904a9c4b04fedf/659_ecd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1394/659_ecd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/69d525377f0f06a30b84be16e7d1ab/659_Wm-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1541/659_Wm-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/53b4c97d0b717052ed27544131fe83/659_wQ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2106/659_wQ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f2f3642b84d3f7578ed3c215a2665d/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.fastp.html 179/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/17de4aecb6faaddf95c846ad4e9741/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1287/659_dRe-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/f1a140e26752d178425115b4293a36/659_bR4-T1-TRNA-1_B23MHV2LT4_1.fastp.html 148/659_bR4-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/8eda528b7f803fba77438aa56add1b/659_dKM-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1965/659_dKM-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/5a7eb9d0e220fb640bcc7d3f7c294c/659_ri-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2042/659_ri-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/41679a3b19931e1caa4e3fb1a29b91/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.md.bam.metrics 1889/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/3d55f07b0c4b2e70e90770e889f4bf/659_ri-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1370/659_ri-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/03f2fdccad242780c1538b099744cc/659_cfy-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 912/659_cfy-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/8d252f6e8915fee7910a9274c22493/659_bUW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1344/659_bUW-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/bacc0e1b5f2cce8bb78508c63421aa/659_cuO-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1450/659_cuO-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/596cbeadad73f510ec56fbbfb30567/659_dXa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 525/659_dXa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/91fc0ef471e06f022d69e20bcd7fd3/659_dts-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2336/659_dts-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/4ada3ff647ac117f2163b8b8b85803/659_wQ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 961/659_wQ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/abecf52c329bf3cbcdfb0b677bde3c/659_b6o-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2023/659_b6o-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/5a7eb9d0e220fb640bcc7d3f7c294c/659_ri-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2138/659_ri-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/e69628f142fc838eb13975d0aa403e/659_6i-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 252/659_6i-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/8c014e8ffa506bcf75c7d249174dc7/659_On-T1-TRNA-2_B23MHV2LT4_1_trimmed_2_fastqc.zip 322/659_On-T1-TRNA-2_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/8606322ec5f7f17ca1254e9e17ca39/659_Dd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 660/659_Dd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/f227495c300830c0ae3364d5c8ee13/659_bGW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1796/659_bGW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/393ce66546243f4edc6f5d52e4047c/659_d01-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2101/659_d01-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/657c96613ce8b28df885f3d6fdcad2/659_eHw-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 861/659_eHw-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/617a60a16b8f03c5a59614b43dab3f/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1817/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/148f611a7a517a90d4d5f57f49e117/659_epZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 92/659_epZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/748e01c4ac8b7fa138740252aa71ae/659_Fr-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 742/659_Fr-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/76af38d9e040a963d18961b6e861da/659_zO-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1417/659_zO-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4b713aa5e8526f60cedfaccf60b987/659_dts-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1586/659_dts-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e0ea269f0654fdb5f5647f860132f1/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.infer_experiment.txt 850/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/1828cb3d2e9d327f27ca705ec6fa78/659_ri-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1754/659_ri-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/dbd68bb70ab0f44d7f170abad56a7e/659_buD-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 922/659_buD-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/1d0adb1f8aa48a86860310358e643a/659_wQ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1438/659_wQ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/128c132f4d66e36caa42ec42d11b42/659_bhK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1501/659_bhK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/c85c8f88c68a9245bb400d7eebe6e2/659_cq5-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 209/659_cq5-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/b603613abda4867c3410ad0e4bf7cf/659_Kh-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 484/659_Kh-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/b154d23e2063751b8d17fd654ba691/659_ecd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1585/659_ecd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/cdf94fdce569b8867de972767d03ec/659_bGc-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1284/659_bGc-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/a3e75565dfac715bf89ba3cb3f460c/659_epZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 859/659_epZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/2ce3b7cc336d43408493218695b008/659_b4x-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1100/659_b4x-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/a0e9c8279bd98d011c3de21b5eb9af/659_cwv-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2184/659_cwv-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/db72ba1dd1c8f00c9767942b0f1c2d/659_epP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2295/659_epP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/71bab4fde919714684ba6b0bacf7be/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 668/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/e008211ea95aea625958b15f8a6f18/659_bUW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 350/659_bUW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/327791df55b0a2ac57657e8a69c31b/659_wQ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 769/659_wQ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/08523da04fa56fd30c64711cc90200/659_bUs-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1439/659_bUs-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/02f804e362aaa8fd1cc68caff88219/659_dXa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1388/659_dXa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/d9f55002c2c94aff045a87c1a4cef0/659_epZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1994/659_epZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/ec9c4cb4abb31c00eb50f6d779032f/659_bGc-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2151/659_bGc-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/87bbdd680b6f44d6c63efeda54609d/659_dHy-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1714/659_dHy-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/5e48cccefec862234ecff07be7f840/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.log 447/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/d720c01c0d703266a1197f001893a6/659_bUW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1239/659_bUW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/bdde0a0ea2b73bb38f9e0eacbf0c2c/659_cTi-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 277/659_cTi-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/105198c925450980842549d7dec2ed/659_cAd-T1-TRNA-1_B23MHV2LT4_1.log 422/659_cAd-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/b04f619b7bce92dedb62ddccd611a0/659_eKx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 978/659_eKx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9c5bad26ebd5066e58d3dc00126205/659_eeB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 228/659_eeB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/c5ad3d098b0cdc3902ab8e97c30b7c/659_mK-T1-TRNA-2_B23MHV2LT4_1.fastp.html 136/659_mK-T1-TRNA-2_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d6f9da9a3ff3f96e1e56e7401b0bdf/659_dkd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1359/659_dkd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/e777a98c3b1e1257b16b7dafe32df3/659_Lx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1569/659_Lx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/7ba2a67752509bfe73ab33ba968651/659_dQk-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1837/659_dQk-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/caaf4c9aa1e1a651d8969fffd502d4/659_bNS-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2328/659_bNS-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/55daa7a586a4bb56bf6336fbdc9c15/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2351/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/c73a26a6b3bc6f0c5d99e2fd94541a/659_bR4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1293/659_bR4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/02659e6ebad8c968eedb713804c0f0/659_cVw-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2013/659_cVw-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/4bbd0c29ab6d6066ef5df4ca59dd23/659_SP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 517/659_SP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5cf560e71ed89677770d5ef41cd79c/659_buD-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2077/659_buD-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/c822cce95bfddcaec1ab5d537be72d/659_buD-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1685/659_buD-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/e9af4dc8d702369d688fc3a6efc750/659_gK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1707/659_gK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/512a473a16073bae36882dc659d5a6/659_Fr-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1975/659_Fr-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/8046dc29bc10de688d3470bdfdc3f9/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_trimmed_2_fastqc.zip 382/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a5f6fb2af18dd9c696cbd975302694/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 649/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/720e253615ba5cef9e7c7c0153f40f/659_bUs-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1808/659_bUs-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/34ba84bd396c44dba563294e138584/659_bIB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1816/659_bIB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/f57045e647c87a68cfc2ef9be0b9ad/659_b4x-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 236/659_b4x-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/7f9c1b5a3f95c95f920731f1562d8b/659_mK-T1-TRNA-2_B23MHV2LT4_1_trimmed_2_fastqc.zip 268/659_mK-T1-TRNA-2_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/e3a96d818655365cd87ed91ecf86cf/659_b6o-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1447/659_b6o-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/7e0ae167d22924829cea8cc07a0e2f/659_Fr-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2346/659_Fr-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/058d5d8fd8591ce0143828956179a5/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.junction_annotation.log 1055/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/186e51bacc48b858eaf5757f765b43/659_ezg-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1804/659_ezg-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/b12672a4ee4ce9586d198f66156d8d/659_cVw-T1-TRNA-1_B23MHV2LT4_1.fastp.html 183/659_cVw-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/b0a1f199036784214a9fb744536669/659_epP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1634/659_epP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/bb2c53c40123095e9ab2fb20dc6b5f/659_Mt-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2155/659_Mt-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/6e0d341d42a94f49161252cef23de5/659_6i-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 607/659_6i-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f00cf4b2544cfaa22d6d1b6f8a12df/659_cq5-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2121/659_cq5-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f2f3642b84d3f7578ed3c215a2665d/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.fastp.json 83/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/51bb7d928f3ba586141fe377af3938/659_cWx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1322/659_cWx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/dbdcd1002f6ed80c40aadbd4f0c8ad/659_d01-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1774/659_d01-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/6a433b48423cb1b81bcb42ff22b6ec/659_bKP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 728/659_bKP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/3087bbd26994f996757e8a537a5d63/659_dc8-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2068/659_dc8-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/e3c4f99b9651124f5a01887cbc75da/659_Wm-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 773/659_Wm-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6861de43c8a7a89188502e33662e9f/659_d0M-T1-TRNA-1_B23MHV2LT4_1.fastp.html 108/659_d0M-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/034c65107810d739f36d36ad487f4a/659_cB6-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 665/659_cB6-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/9ab89668819dae384a31b248522289/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 901/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/347d5abb5b349e60f95c397c246778/659_bMa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1105/659_bMa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/76ac75841277f8969150f693b6b596/659_bGc-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1959/659_bGc-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/955cdf2c633dd0aa32f084449b16c9/659_bGW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2176/659_bGW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/b83d884ebbf3051f7cd78d08e1f3d2/659_dcz-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 506/659_dcz-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/800547dd9d1a2462cd432c46b78d7d/659_zO-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 940/659_zO-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bd5a93e7706d18a116b877d0cdbc2a/659_eu1-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2137/659_eu1-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/d3bbc0ec0d91c2f1ffd26def18815e/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1529/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/7c2b6fa2fca9a69b420460cf6443ae/659_epG-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2162/659_epG-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/33dfdcb04cabdffdd984f83fc736de/659_8h-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 196/659_8h-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/6d80a60f26429f7af99fcbac67c0e5/659_e0S-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1649/659_e0S-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/277b0bcd19c82038e8742592a726cc/NTC_0001_0001_B23MHV2LT4_1.log 405/NTC_0001_0001_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/d13ea3c9a2910f28c117732b9937d8/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fastp.html 134/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03ba64eedd525bfcf0a094f36e9aa2/659_wQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 341/659_wQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/caf72411bc999ba228ec9b383d9646/659_e0S-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1265/659_e0S-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/97f836008e291e366dbfbfcc34e0f1/659_Lx-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2317/659_Lx-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8f59f20a3ceb61bc0b24eb08aa5413/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1670/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/1df3255a1610a254b6e3a3ddb71819/659_cAd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 360/659_cAd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/8fbf05d37baeabd4bf157916f418d3/659_cTi-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1215/659_cTi-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/088a4971243eff9c6751c94515855d/659_Lx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1858/659_Lx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/09656ede30a9aac24890477e50e1ca/659_cRB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1950/659_cRB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/7ae3db822932afddb27c543354fcbb/659_bNS-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 914/659_bNS-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/ef3d7a6d06458ab7c7bd4462924c74/659_6i-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2047/659_6i-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/b850def59da4bbbae06c22138e8787/659_bMa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2044/659_bMa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/4bd9f78b30035ac0c2dd4031d8f864/659_cfy-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1006/659_cfy-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/df9e408af84c4e925e09649771213e/659_dfA-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1509/659_dfA-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/bbcaa84f44c89652b5edc57f4c65ff/659_cuO-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1075/659_cuO-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/4861f0c39cfaacf285499613d9f005/659_On-T1-TRNA-2_B23MHV2LT4_1_1_fastqc.zip 1149/659_On-T1-TRNA-2_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/0ebe9e572c6b01a83319fa2d25471c/659_cuO-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2122/659_cuO-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/fb7a40850ce46508801f454ebefcc9/659_cB6-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 545/659_cB6-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/662b57556467f01f7120a1a544afd2/659_cq5-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1737/659_cq5-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/e4ff34495b10a7b28cfdf1192ccd82/659_8h-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2212/659_8h-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/7885b41d724b1a2532284a17225ef2/659_cAa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2027/659_cAa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/c11c4f0f2950fa86af762b5f505ffd/659_eGK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 770/659_eGK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/641db2e50e778fa53466e66d02df30/659_dXa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1166/659_dXa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1010a92c458e578801ef2cfb3d754e/659_cVw-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2079/659_cVw-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/5fe11ad5feb382e9ea0fcf1229e6ca/659_Lx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1122/659_Lx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/a4910351e884b0463d74fc8634bef9/659_dm4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1662/659_dm4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/cdb2176e68f2ad2806a46f67636a18/659_epZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1335/659_epZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/f42ea1012b330495614d98d882c4de/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_1_fastqc.zip 1197/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/021a1b38d9429e13593dadf14d2784/659_c95-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1419/659_c95-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/122671d3834dbba1bb51fdf213088c/659_djb-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 636/659_djb-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/75e741996eed32fbbd9929f16d26d8/659_buD-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1400/659_buD-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/7f1977aa4808eea515d19051058d74/659_SP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1013/659_SP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/e8620b3005c0d0ac3119e59f3f5710/659_ri-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 602/659_ri-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/532d5cb4c66b4ce05cd73ffba5bc39/659_R1-T1-TRNA-1_B23MHV2LT4_1.fastp.json 5/659_R1-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/f4cab2ef7beb057ccc7c497821698b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 928/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/206a73a60823425de95ff522ddf8c3/659_bR4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1002/659_bR4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/2e4f678af9d2714bfd105015e7d7e7/659_dQk-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1646/659_dQk-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/4f452370da64e699eed60611acd08f/659_1q-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1040/659_1q-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/620dacf6a77d5d33e1cee453e8e64e/659_cRB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 992/659_cRB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/8e57e63d1004971a14d2b42dc0ea3d/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2372/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/1ab0aacb7ce5ab8c51bdde718fa76c/659_dcz-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1275/659_dcz-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/5c6dad33d05f40be07a8b76ecdf0b5/659_Mt-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1412/659_Mt-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/185542aa1521efb55041f830d09d90/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1227/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/3e5a2bcefeaa790dd318d768dd0d69/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1722/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/e88655337076d8b1f890ff48a0dcf0/659_Kh-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 963/659_Kh-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1df7f13c8cc12c164d3bb2e766f071/659_cAd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1386/659_cAd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/037912e17f9b3e5247a57efed1290e/659_egp-T1-TRNA-1_B23MHV2LT4_1.fastp.json 20/659_egp-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/619327e3df687db584a08869c6afbb/659_epP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1226/659_epP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/635a636392e9e50338ccb127ec6ab7/659_Fr-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1026/659_Fr-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3d0c43f681c7d2d1205a30ca376db9/659_SP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1492/659_SP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/f175cd16c66dba9fdd2cfc950b818a/659_bMa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 246/659_bMa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/69add232f210cc758bb1706be01caa/659_epG-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1693/659_epG-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/ae6417ede9f41c410dcaf4f7158ab0/659_cIX-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2075/659_cIX-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/b4aa7a37ee4c062ae64c4268953339/659_On-T1-TRNA-2_B23MHV2LT4_1.junctionSaturation_plot.r 1671/659_On-T1-TRNA-2_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/709a08b879dd0c26aaa445d694bb67/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.log 433/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/94f8585db4f455bc73640841147cea/659_eKx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2226/659_eKx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/922ee6074245804a69c9dc40825fe1/659_Dl-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 253/659_Dl-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/d889375492d531ec66ba6094332560/NTC_0001_0001_B23MHV2LT4_2.log 406/NTC_0001_0001_B23MHV2LT4_2.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/407d3e9cd221f8abf826a14cedcc09/659_gK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1137/659_gK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/e2b003cd1adab6aaf5afed66d5e621/659_bTo-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1157/659_bTo-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/d4587b164ca92a2c632d9addffb933/659_dc8-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1982/659_dc8-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/27dcb0a732006a66e8a5b28d7ec6d1/659_ePR-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2058/659_ePR-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/6383e88c1b9526fcbbca9e0a4058ae/659_cGW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2309/659_cGW-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/ec44a06c996dfb95fc29d2b5769d86/659_cIX-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1779/659_cIX-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/13c365afb1dab371ee19d02d912faf/659_bUs-T1-TRNA-1_B23MHV2LT4_1.log 474/659_bUs-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/81aa565cae35109c3b14791846bd31/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.fastp.json 39/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/32c25d1e944052e6692f7a35f82462/659_b6o-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1255/659_b6o-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/f0fee28b9f7b21283066087ae2310a/659_c95-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1806/659_c95-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/22ca4d9eec24304e1af7f944479df1/659_bMa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 988/659_bMa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/bf46f79d73744f7811702362a6a51a/659_c95-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2193/659_c95-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/ec1cf1f40ec104d4d6a4c3c8f67594/659_egp-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 787/659_egp-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/86ac223abad1512f22071b99777283/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1174/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c91317bfc0717fd7e2483b129c9920/659_1q-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 269/659_1q-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/3517383a79ac967b4c431ddee0199c/659_gK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 367/659_gK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/f731e2e8150472a38b4301fa0e606b/659_cB6-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1145/659_cB6-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/996e26376923d06dd3f768d98b3174/659_zO-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1170/659_zO-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/eb1ab87d7b9377827090e7f3d6ca9a/659_d01-T1-TRNA-1_B23MHV2LT4_1.fastp.json 67/659_d01-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/87834312f3fa5247220ad10afa58cc/659_dc8-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1599/659_dc8-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/a7368e4def16305e4bed25a34aa568/659_d01-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 302/659_d01-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/f49eb5738f3bfc7f791d0af394dd57/659_cRa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1997/659_cRa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9a3801bca7b15e65031ab476c9e481/NTC_0001_0001_B23MHV2LT4_1.junction_annotation.log 981/NTC_0001_0001_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/5e239467e28c477fef3617d4d702da/659_eGK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1186/659_eGK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/4e0d49d6eb7f6a7bfea0e90dd69101/659_dcz-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 987/659_dcz-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/a6afa53f04f0bae93f2e65afe9e57b/659_eKx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 786/659_eKx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/d1f6104d717dc95fe980c260c4dfe0/659_cwv-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2280/659_cwv-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/d90b919a2c1a0587dda49ff8180092/659_d01-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1151/659_d01-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/04ddd470449bbda0ae0c0be66e0f90/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.fastp.html 191/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/64bea24e63cc0f969f70b693432372/659_SP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1787/659_SP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/6d83ef52292899d1fcc7fc6a80ea90/659_ePR-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2323/659_ePR-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/293bacb0eb12d83ed9e1e98b24c4e3/659_e0S-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 785/659_e0S-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/7a0b83616859a4c74f66be1c8d0dfc/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1521/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/0db122b286f198628bb19f953f4131/659_djb-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1048/659_djb-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/3fd0b8c004ef9e47fa98fba22a20b9/659_cYf-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1960/659_cYf-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/27dcb0a732006a66e8a5b28d7ec6d1/659_ePR-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2154/659_ePR-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0eb739ab7cd4b05feec32d2ac0109c/659_bTo-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1303/659_bTo-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/5b33e881065e36c6b0563838ac96c9/659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1922/659_bTo-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/273851841fc133971ba7c1085ffca0/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.read_distribution.txt 1518/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/2705f76d92a317b095ac4c22b54025/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2186/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/f4f1b5d763f47a632a702762242ddc/659_buj-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1928/659_buj-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/eaaadf56d2ef980b4d0192d2730b7d/659_buj-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 680/659_buj-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/46df9a2220cf7ec57118f6d34762c7/659_bUs-T1-TRNA-1_B23MHV2LT4_1.fastp.json 86/659_bUs-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/fc5f0c0a3c0ff1b3f44e8b8bbe2cf6/659_1q-T1-TRNA-1_B23MHV2LT4_1.fastp.html 137/659_1q-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/87ffacb0a65d010af421cefc615252/659_bUs-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1033/659_bUs-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/aa5a823ea2a8545936e59371d7d53b/659_dwi-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1744/659_dwi-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/4aa2e816608a20e5cc1031a0490750/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.attempt1.command.log 2196/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/04ddd470449bbda0ae0c0be66e0f90/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.fastp.json 95/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/6f7630cee603730f0eeaf7d9ddf562/659_dQk-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1082/659_dQk-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/d2474f3f21b4479cfa6c3ece208c27/659_SP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 631/659_SP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/64f3fb8316960d42c113dac820ae73/659_Dl-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2238/659_Dl-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/a0e9c8279bd98d011c3de21b5eb9af/659_cwv-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2088/659_cwv-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/123cc2c7dbd7e11de4b37d1f44964c/659_cRa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1249/659_cRa-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/95a715dc7cc4c81fd00afc4b8cb715/659_Fr-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1795/659_Fr-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/6f508b1e487db862d541c5d4d1ca0b/659_dc8-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2260/659_dc8-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c30e2663df505538b0026de58114c9/659_c95-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1199/659_c95-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/d954b4e77375f8afd0fec89d3dc46f/659_cRB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 798/659_cRB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/ac811f1b2775050eddd83d3ab6d88a/659_cAd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1580/659_cAd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/b1af910ee5488a6e2f7e09c55d846d/659_egp-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 500/659_egp-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/80ec6ef30c17f8ab5747e5fa81cb31/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.log 480/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/ab953bf88b6c27d4074dac19c45eea/659_eHw-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1337/659_eHw-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/06ea9b8325d03ec5303b692c194dd8/659_Kh-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1251/659_Kh-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/1f08c1d878a195abdbba2feb68c427/659_eeB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1268/659_eeB-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/7aba3a61bd33be29280d688156244d/659_dcz-T1-TRNA-1_B23MHV2LT4_1.fastp.json 26/659_dcz-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/75c8977b735a5f262542f8a9491b69/659_cTi-T1-TRNA-1_B23MHV2LT4_1.fastp.json 62/659_cTi-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/dd44a4ac11880bf8d5d492f6411374/659_bUs-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 570/659_bUs-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3698e7e1cc28fdfd6e8841144c115b/659_epG-T1-TRNA-1_B23MHV2LT4_1.fastp.json 77/659_epG-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/6204d7c002e7c892b7c2bbb64bbb9c/659_bNS-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1392/659_bNS-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/5be84b7b9c8f37cf7d7fcd50f3ca32/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1406/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/f296714a2679b89a9b61292871cd63/659_dRe-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1576/659_dRe-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/44aec7bd6f611a25acb6edbdd503a5/659_dES-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1583/659_dES-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/1e3743d04c67adcaa0686ebe448c4e/659_cIX-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2330/659_cIX-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/40a47a0fa4d00996b3cb164303d4da/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.junctionSaturation_plot.r 1705/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/208ca627dbf2cf147dd95613a9c6ae/659_dc8-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 834/659_dc8-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/84864519873ffcc0c427fa25fe3ef3/NTC_0001_0001_B23MHV2LT4_1.junctionSaturation_plot.r 1653/NTC_0001_0001_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9b2f8680b9e3765fb293bd5ed4c213/659_bGc-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 273/659_bGc-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/81bfb6957278ebf3fcb9aa80d0e055/659_eGK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1345/659_eGK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/ff5ff0ee00bcf2068051922ce75109/659_mK-T1-TRNA-2_B23MHV2LT4_1_kallisto_mqc.tsv 516/659_mK-T1-TRNA-2_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/f2a198bc2a9056275221dcd1d804ed/659_dcz-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1755/659_dcz-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c428c3b51fed96fa1379e9bc8cce1/659_dts-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 724/659_dts-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/8529075544b82001c68ecd5d589c73/659_6i-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 990/659_6i-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9f993d8404bf9180ff4e8dcbcc8119/659_dm4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1111/659_dm4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/d73aa67fece420c1dd61f6ba86424e/659_cuO-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 970/659_cuO-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/3c939c41cc48ac4be3ed0f1fda048c/659_bGW-T1-TRNA-1_B23MHV2LT4_1.fastp.html 142/659_bGW-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b8271e4391618825bf0c879d315105/659_end-T1-TRNA-1_B23MHV2LT4_1.fastp.html 172/659_end-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/c78f5f6890e4aa49e59f475259e6c6/659_dES-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1043/659_dES-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/c9c08753faf76383d33646998058b1/659_cTi-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1610/659_cTi-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/847e9adc647e7bfab0c75e57eaecf4/659_bUW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1440/659_bUW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/f2e9bbb06804291b4ba2c170dc3420/659_1q-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2091/659_1q-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d74c830018a037b6886f8816168bcd/659_eHw-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 384/659_eHw-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/8ecbf52aee0487a79c419f5f3decf0/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.pos.DupRate.xls 1794/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/960b5e1a4ca915aacc5cca850e01f5/659_ri-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 986/659_ri-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/4ffe1b295810a10915c3c4898f823b/659_bhK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1023/659_bhK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/bf0304608dc6eb4d8d5a8083a48195/659_bCu-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2290/659_bCu-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c0b73517a169c5667aaf9e3a3efe8b/659_dcz-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 242/659_dcz-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ed12c817a73a6b795d683a7e652890/659_buD-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1497/659_buD-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ab283d296c220af32b1362b874adbd/659_ePR-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 917/659_ePR-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/bc74f374e1a57124ff23272aedd13b/659_b6o-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1925/659_b6o-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/df8093a03089ac6ca98e9074b99aef/659_epG-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1993/659_epG-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/92b1b190c98653f7c1b0ccc31cb69a/659_buj-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1069/659_buj-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/645c8ca4c5292e8b2c0e90d5d4c1cd/659_dQk-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 686/659_dQk-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/3e68bffa95ce135b7d380e3b64bd97/659_Dl-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2046/659_Dl-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/ca779c91a58934a42dd802105ffed3/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1957/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/fe6617980bdb45184e278713dcd418/659_dcz-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2311/659_dcz-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/eaaadf56d2ef980b4d0192d2730b7d/659_buj-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 584/659_buj-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/87ad235faea4c30ab8ed94ae9fc840/659_b4x-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2231/659_b4x-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7666a3320fbda6a04eea6fb87bfd1d/659_wQ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2364/659_wQ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/f1673f443a320c8d043bbc55856cda/659_bKP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1969/659_bKP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/6421972319f5ee59bfc6d8953965d6/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.log 432/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/ba74a42879b0d36fc62c6dd7ee3908/659_dQk-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 494/659_dQk-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/69d596b97ee3748d87d5c2f5eb0a68/659_cIX-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2267/659_cIX-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/b1df512dfd118da09f9bd165915ccc/659_eKx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 498/659_eKx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/a722f013aef33705c260ecdaf510e7/659_eHw-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1244/659_eHw-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/748e01c4ac8b7fa138740252aa71ae/659_Fr-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 646/659_Fr-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/da57dd1a103126b90fc859b8309d9c/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1336/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/c2ec8296683900984aba5068a22ab8/659_bKP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2344/659_bKP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/501d97e77beb094b98f23a784b2f38/659_eeB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 980/659_eeB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/1b42be3158ca44ab84569387321240/659_bR4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2333/659_bR4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/47221ef66bb91445b42b7421bfd7cd/659_dRe-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2326/659_dRe-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/877e7156c1f9d975dec80a65391dc5/659_eeB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1652/659_eeB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5edba8a6feeac5f9fdfdde7c749651/659_bTq-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1231/659_bTq-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ea57097b4dce8f342d00c924abf258/659_cAa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1547/659_cAa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/2befce194e674cc464b4bfee0c979b/659_e0S-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2225/659_e0S-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/2ce3b7cc336d43408493218695b008/659_b4x-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1099/659_b4x-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/26604618461dc34e87d199fa4b4805/659_mK-T1-TRNA-2_B23MHV2LT4_1_2_fastqc.zip 1132/659_mK-T1-TRNA-2_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/35d5bb7ca7f7ea37d8b43530c16b12/659_bGc-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1178/659_bGc-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/76a129948c6451f5e9406ce9661f9b/659_bUs-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2003/659_bUs-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/7eba62266b1c8d28ad7a2dc9176071/659_rd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1857/659_rd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/eb1ab87d7b9377827090e7f3d6ca9a/659_d01-T1-TRNA-1_B23MHV2LT4_1.fastp.html 163/659_d01-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae1964fa9d2678385b142b0da0b910/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 612/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/325d54b523ff6a14adc3e4cbf36a80/659_cRa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 659/659_cRa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/57f72249396457ace3462c2cb82d8a/659_d0V-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 215/659_d0V-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/da9962c407b211ba29a069e80f2091/659_bhK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1221/659_bhK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/2dd255dbe2a62929b14e1e1e43350a/659_egp-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 979/659_egp-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5545fe56467150d1e95b8c5be31539/659_eHw-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1632/659_eHw-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/3a5fb39462ed6f59c4334f759172d5/659_bIB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1442/659_bIB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0b581287a4b994e3b54b41676cf353/659_bGW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1205/659_bGW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/35e91896baba06dae12f2fbb02fbfa/659_dc8-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 374/659_dc8-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/ed923378628bfe70545ef16d96ecfe/659_cAd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 906/659_cAd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/a42aadec3ca4771eda21fd7f8cbd3f/659_eeB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1460/659_eeB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/b2c743e54a9581bfffdbd37c8c40f0/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1987/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/e98ce3822614f0df08656a86c691c7/659_dwi-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 221/659_dwi-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/02d0ec317f6632412a165863e68857/659_Mt-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1140/659_Mt-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/09b9e6b810dca560d6131b8a1569e4/659_cIX-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 827/659_cIX-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/219cd58b94b7970150ddaa63e68101/659_dXa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1004/659_dXa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/56691df122961d59526c6adbb254d5/659_ri-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1110/659_ri-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/1cbdea44b83bc4902af6fff47a1a3e/659_cAd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 618/659_cAd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/545bce85356d4e84bfedf677f84ff5/659_cGW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 504/659_cGW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/6a433b48423cb1b81bcb42ff22b6ec/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 632/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/058f235841d8355a5c11cf17644d6e/659_Mt-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2251/659_Mt-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/66927acbc49b6007ac80a32446e4da/659_bIB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 540/659_bIB-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/615aa7bcf6baf21432a68e017e1048/659_d0M-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1740/659_d0M-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/d0d49fb9bb9dabb78ff54c1d64f364/659_cVw-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1814/659_cVw-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/123cc2c7dbd7e11de4b37d1f44964c/659_cRa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1250/659_cRa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/76967915815377936ae51575125f3f/659_Kh-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 867/659_Kh-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c420eb6be2c37dca835363a5a568e1/659_buj-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 872/659_buj-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/f85f88cd220d41af017b6cb19dc176/659_eHw-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 958/659_eHw-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/546aa216bc3f5f600e021d48c3770b/659_Dl-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1376/659_Dl-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/064cc00f5eb41b938d68c7373a750b/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.infer_experiment.txt 836/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ebd12aafab7d3183fcfe9883660124/659_R1-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1063/659_R1-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/94b6aba9c1fac9210f631fad5639b3/659_b4x-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1271/659_b4x-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/619e7a967c2168352cb4193a127237/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 572/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/c8b297d38759e902e8152391aeaa4e/659_epZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2353/659_epZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c91317bfc0717fd7e2483b129c9920/659_1q-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 270/659_1q-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/8ba2753d39384c9212e31bdb0d8c2a/659_Wm-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1733/659_Wm-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/5efb39995277466198a91062eb61dc/659_ecd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1212/659_ecd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/55cb11a2dd66b989d26fdf2260e311/659_cfy-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 721/659_cfy-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/d495a24d05294bd50f841a238946bd/659_bUs-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 369/659_bUs-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d820dac02645da51b5776468b642ad/659_dwi-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1085/659_dwi-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/43ff62620cad11296a36a9ff89bca8/659_dXa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2067/659_dXa-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/98f105331b597f9aa67a25d39b8734/659_cuO-T1-TRNA-1_B23MHV2LT4_1.fastp.json 11/659_cuO-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/371a06526f11dc4eb7e37f2c046dc9/659_epP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 768/659_epP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/5d08166ae768fd72f8a09eb4c60aac/659_R1-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1254/659_R1-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/760b8a594fd6ca5f18b1a298f97576/659_d0M-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1548/659_d0M-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/6e7fed9c70e9ef71b995a079805f59/659_cYf-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1669/659_cYf-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/d7692159f9728239efea99a7b2aed1/659_dkd-T1-TRNA-1_B23MHV2LT4_1.log 399/659_dkd-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/de0eaa2e2eb7bd60676b41f9902658/659_wQ-T1-TRNA-1_B23MHV2LT4_1.log 431/659_wQ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/aeb0967f54aa35e94d126789f04f36/659_Kh-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2307/659_Kh-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/4acc8a7a75abd727d4c6ca90d37d44/659_b6o-T1-TRNA-1_B23MHV2LT4_1.log 391/659_b6o-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/2dbc7a532be0a5befcbeff7862ba9b/659_cwv-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 357/659_cwv-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/5dbe6962cb235b1b6365093172472f/NTC_0001_0001_B23MHV2LT4_2_trimmed_2_fastqc.zip 234/NTC_0001_0001_B23MHV2LT4_2_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/bd986099f40c4d2e59c0d73d164f49/659_ezg-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2060/659_ezg-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/cf54d041d0e7f466013b7993f19b5f/659_d01-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1003/659_d01-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/dd545fed128436a87bcfb78cee746d/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_kallisto_mqc.tsv 576/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/b6a27e803f31d737a9d5fd483bed0e/659_buj-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2024/659_buj-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/3baf2de51ee3f89f4980c35c8b2124/659_cq5-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1353/659_cq5-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/818f69b5d637b0af4b7188bb507d94/659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1874/659_bNS-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/158617f63643f5f4155089119bd01b/659_dHy-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2008/659_dHy-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/7780a21def4e63ae7a24643e1864f9/659_c95-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1904/659_c95-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/83425c03bf15c6a4abb33e3c452bee/659_rd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 994/659_rd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/95ad6832f133f7657928c08a2fe223/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1716/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/146553381f3c7948f6876a6e229ef0/659_1q-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1676/659_1q-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/1f6e7de8baf9eff24d12aa822a41b7/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_preseq_mqc.tsv 2304/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/7d3cd5e96ef73239623976444406ef/659_end-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1188/659_end-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/962dd95e20c1d5d156766f0509e89d/659_cGW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1560/659_cGW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/ebaddb10f8aa4ace8ed4c54ea8cb1b/659_cIX-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 332/659_cIX-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/417a808b7b71d8d526e11dd6f40920/659_cWx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1996/659_cWx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/68712cdb0e2de30b7bd7813eddf308/659_cB6-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2200/659_cB6-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/c204cf80cfe8e8ce5eaf946f6871d7/659_bIB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1172/659_bIB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/9e2ad6cb67d2051a33fe7ce6db041e/659_bTo-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 328/659_bTo-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/50656642913c259f72e7b4f98d421d/659_eGK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 552/659_eGK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d793fe563964861b86799f50df3e15/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2242/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/f594d8b3aa258900d53b040d3ae120/659_bGW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 839/659_bGW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/af5cd64ed3020f60e5dd75c4f93223/659_bGW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1506/659_bGW-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/1447ae28d6fb56fe46d6ad918ee185/659_dES-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 627/659_dES-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2020cbc7c00060ae9a2dddab7d0d8a/659_Dd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1423/659_Dd-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/0f8b77a533c0f93889000a82149de0/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1053/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/01c4db2ee999ff234b9357c9eaca23/659_Lx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 993/659_Lx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/a42e127d3da3b44da1908f425a07d2/659_dKM-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1005/659_dKM-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/3237c96ddf06bbefa1731dc36fdd83/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1052/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5a2687d274f15c0b3804c253354f56/659_epP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1538/659_epP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/da2633316b6001a786b41cb27dd5b7/659_cWx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2072/659_cWx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d780f48bc75ad234a9902f92899888/659_Fr-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log 2204/659_Fr-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/d85e61ff42da715e79e00484797043/659_cuO-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1930/659_cuO-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/96ad4c046a7107df8c5930214d4a7c/659_cAa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2219/659_cAa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/7ba096582380ebc9f8b804e2dc6aba/659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1921/659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8/.command.run .command.run")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/166e20382020e5bd56cae7c8075073/659_6i-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1279/659_6i-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/b89f40917b82a743affa5600ba722a/659_end-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 737/659_end-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/ab10ac466750f1c9c12a7d99fe4e0f/659_8h-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1827/659_8h-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/c30129f716b070a69120a8c1593e58/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 325/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/5b978d439044f7ef0a3a20bf04500f/659_Dl-T1-TRNA-1_B23MHV2LT4_1.log 413/659_Dl-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/3216bfeae9ab9e1b01190b3d95106e/659_bNS-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1179/659_bNS-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/7a1885e17c8ad17c2875ed7ae7945d/659_cwv-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 829/659_cwv-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/bb75b616ea0af301c6fdaec9bb9abd/659_Wm-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1637/659_Wm-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/e34a7d9cbc22ba1b52c18f17a6e4b5/659_eu1-T1-TRNA-1_B23MHV2LT4_1.log 409/659_eu1-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/f53667288a3b24740a15b3041f02ef/659_epZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 955/659_epZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/ec391bde20472e53a007914be63077/659_bIB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 952/659_bIB-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8fee66afb299e1ce21117011b5232a/659_On-T1-TRNA-2_B23MHV2LT4_1.pos.DupRate.xls 1770/659_On-T1-TRNA-2_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/0e2cfe11ab12042b763a5ff6c85593/659_SP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1398/659_SP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/66e4b7c9f6308a676a51b02535fffc/659_Kh-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1061/659_Kh-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/4ef416ea6ff512f66747a87d9e238a/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 266/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/ce4079215743a29e7545fc9b02e611/659_dHy-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 522/659_dHy-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/82b5e8d21fa4d8ead5366ea624dfa7/659_cTi-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 720/659_cTi-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/6d0d7c5355b3113520614c195fa720/659_SP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 824/659_SP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/1334540d571b9d9de1adb3a6c4d673/659_bCu-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1124/659_bCu-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/18653f94f7a32e3dda42b1c4196391/659_bua-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1246/659_bua-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/d254ad825a0263e3b929f9d3f98cc9/659_dHy-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1425/659_dHy-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/217957b7f2bf6e141a62e81a2f76d9/659_dES-T1-TRNA-1_B23MHV2LT4_1.fastp.json 68/659_dES-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/29cc36d62a973ec73aaabca791f624/659_eHw-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2169/659_eHw-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/7e01f0e6c2c4075dfe2d829aab73b0/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.fastp.html 189/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/4b880889fbae248bfbb2c4d4b1024f/659_cuO-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 778/659_cuO-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/82aa426523329364a9c2d1ca2c2477/659_cIX-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1401/659_cIX-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b7718148e762dca62dec2ce26f3bdd/NTC_0001_0001_B23MHV2LT4_2_1_fastqc.zip 1097/NTC_0001_0001_B23MHV2LT4_2_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/9cf72b3f6c7fa2dd3d70919784ed99/659_bIB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 362/659_bIB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/52f0e74e859e1fa835638eeddd156d/659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1866/659_1q-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/3e68bffa95ce135b7d380e3b64bd97/659_Dl-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2142/659_Dl-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/72263180aba8f423799b8ab32c3ee3/659_bNS-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1296/659_bNS-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/f3aa1e1192b83996847061db0016b3/659_dQk-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1454/659_dQk-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/29d04ce46b4f488c9252b797551ab3/659_Dl-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1473/659_Dl-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/8abf5ea77bbf6e146dd0ea503938e9/659_dfA-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 644/659_dfA-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/554dad58942e478287b3225939ba34/659_b4x-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2039/659_b4x-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/8ecf41cd536d8d5588acdc3c74f09d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.log 424/659_bTo-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/8a8a835135c7ee28eed645833ab753/659_eGK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1824/659_eGK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/43248a9e03e17be501295d125621e2/659_bGc-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2320/659_bGc-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/bff38d843ae542aeece183ff9847d6/659_dc8-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 739/659_dc8-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/9af65be7fc52932a3e1a007c56c458/659_dts-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 312/659_dts-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/3c9c73293c0512d7cea3796042a999/659_bhK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 521/659_bhK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2f7ea689e6a142c0374c92835abbe6/659_dc8-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 931/659_dc8-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/68ba62a5c5f16f270a6f3179e31880/659_cB6-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1625/659_cB6-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/2ec6d015a7a350055438b7a51595cd/659_d0V-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 781/659_d0V-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/5aaba8a74f0cae7c24e5edced58429/659_dRe-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 905/659_dRe-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/75f75f4c4bbfc97de3e255426bb82b/659_8h-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1540/659_8h-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/7447340aa2a921296bc69b26d8f6df/659_bua-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2257/659_bua-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/c9b647592fdb1987ffe26b1cc95b2f/659_epP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1916/659_epP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8cace1e95bbf4491e273b4ed6d3d33/659_dkd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2031/659_dkd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/7c428c3b51fed96fa1379e9bc8cce1/659_dts-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 628/659_dts-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/2d7294b1353f85f739be9d302c05a8/659_gK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 753/659_gK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/270998e5ffc88097925304f8fe8410/659_mK-T1-TRNA-2_B23MHV2LT4_1.read_distribution.txt 1477/659_mK-T1-TRNA-2_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/5e337afe847a4469a68a6b30c01f32/659_bR4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1481/659_bR4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/e96c44273234e9948d499250e095a1/659_Wm-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 486/659_Wm-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/a0398450e6e6398bd4bc7cfa6e80c0/659_cTi-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1873/659_cTi-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/91e7c1a0be1e1cf57d00c8c74777f6/659_On-T1-TRNA-2_B23MHV2LT4_1.Log.final.out 616/659_On-T1-TRNA-2_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/5aa3d9bf740465685e69a98cce8354/659_dKM-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 910/659_dKM-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/3ecf24e6581b77714f408f45634bf8/659_bGW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1702/659_bGW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/b01fb839e3ec65c327d94900874c94/659_bTo-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 520/659_bTo-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/d740b7b5aed1cda3f44c72af5d6d4d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1015/659_bTo-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/5ab6543aa3ddab7963e3445695b015/659_dHy-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1164/659_dHy-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/b62da15753237c9a3d60c5a9032213/659_c95-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 944/659_c95-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/a552d6c7b67ca7aff298f88ea590e2/659_dc8-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1022/659_dc8-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/75389e3c96f4c2e60cb4ba56df9586/659_e0S-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 223/659_e0S-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/90b1bb2bd20c447905eb8e3f52b886/659_cYf-T1-TRNA-1_B23MHV2LT4_1.fastp.html 160/659_cYf-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/d3e59120b44e058f2fce0cf1a3469f/659_eGK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 313/659_eGK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/0f4fd3c2b35b19e62378ba0b399b3a/659_djb-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1306/659_djb-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/72941e53c685043c25f2a76d7ca7a1/659_cTi-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2178/659_cTi-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/89f202a829733101e7c52ea34af926/NTC_0001_0001_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1365/NTC_0001_0001_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/589b38efad144de71514a3041f638f/659_dRe-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 264/659_dRe-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/4d4bd578be4bc8bd9739285347af1b/659_cTi-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1972/659_cTi-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/a59b730913efffd4a346f0d0697abd/659_dES-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2377/659_dES-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c9b110c2e2d9d04706532e8f5dbbc7/659_dES-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 915/659_dES-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/8a739f24e81ecfabd8b06ccfb3cd7e/659_SP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1684/659_SP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/3c24dad002f5bd2b1fbb018da9746b/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_1_fastqc.zip 1241/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/c64223eb49f26504908ecfc2e9c5e8/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.read_distribution.txt 1532/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/5cb1427259774b8aadfdc872282249/659_c95-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 751/659_c95-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/3f4d4403a01dbd6af5a11ddbcdcf09/659_cRa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1607/659_cRa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/43608051cd8d51532f1e594bd1355a/659_bNS-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 286/659_bNS-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/6824cbcfd168661642b7346ae6900f/659_c95-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1035/659_c95-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/26ccd2362f040f4544bca9195db85e/659_ecd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1878/659_ecd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/621e5b8ae95f3f22053b587be30d84/659_bua-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1500/659_bua-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/b170c608e877570fb0997c93e41f08/659_mK-T1-TRNA-2_B23MHV2LT4_1.lc_extrap.txt 2062/659_mK-T1-TRNA-2_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/b1dbb1d2a69609982314a6b066e67c/659_ezg-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2334/659_ezg-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/62926855d1b4d3c09fe105a372016d/659_eeB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1940/659_eeB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/191a504502aad9a0de7a9299a13fc0/659_end-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2262/659_end-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/29d063cd7dbe718751c57be8f99995/659_bTo-T1-TRNA-1_B23MHV2LT4_1.fastp.html 149/659_bTo-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/bb02212e4f3f604ccde5a6a924d8a4/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.log 476/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/3e12df19fea60668a2dd2b3e38c116/659_rd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 513/659_rd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5e2f0b9a97c83f09aa0e3f54b48206/659_b4x-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1367/659_b4x-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/56c0c7d4f8a361f9e5b8d3965a12d9/659_dm4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 511/659_dm4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/353564d9e56d3b29d463a88e648073/659_dcz-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1107/659_dcz-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/6ba60ea86b556be8ee679a7d235fe9/659_zO-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1694/659_zO-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/793c402c56718b18488d7a987ff7f3/659_bhK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1886/659_bhK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/c1e76a26e1facae0b8dafba40463d3/NTC_0001_0001_B23MHV2LT4_1_preseq_mqc.tsv 2229/NTC_0001_0001_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/8c4515914618bcafadf03e54a479a2/659_1q-T1-TRNA-1_B23MHV2LT4_1.log 442/659_1q-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/bc4612ef46c62db2b6c0f693bf381c/659_dwi-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2032/659_dwi-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/b776897d254a80c31cc18fcb63c0e7/659_cRB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1372/659_cRB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/3f690d861f89493311a988d27b8cc7/659_SP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1182/659_SP-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/d16f55cd7aa95ed25939050c18cc9f/659_dwi-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 688/659_dwi-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1daa7e6af777cecc4093a9667705aa/659_Lx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1378/659_Lx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/8abf5ea77bbf6e146dd0ea503938e9/659_dfA-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 740/659_dfA-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/69233aa9ac3b83301ce359e3b1fe0c/659_egp-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1093/659_egp-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0dc63eebafb9a62ffc00f421b7a5d0/659_cuO-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 586/659_cuO-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/df63567253a5636596a4f524269891/659_epP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 378/659_epP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/7c37b51cedcd1f2a35be78f5b7dfa7/659_cGW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 696/659_cGW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/67ff6eb81914c87a3226157a10a32c/659_dXa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2373/659_dXa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/6d8496d30ad68a5eb40be9829e0a8d/659_bUW-T1-TRNA-1_B23MHV2LT4_1.log 473/659_bUW-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/e119b67e8dc81e7f63ccd081bccbb7/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.bam_stat.txt 1319/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/b12672a4ee4ce9586d198f66156d8d/659_cVw-T1-TRNA-1_B23MHV2LT4_1.fastp.json 87/659_cVw-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/468ddd93f4e8c6a1b19502f85541ea/659_dES-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1978/659_dES-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/de0e7a75d5e70d8f9a666c05312768/659_eeB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1091/659_eeB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/3c057af09f5c44fc97102d67fece07/659_dKM-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 305/659_dKM-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/fe551878c91538d7946d2502e6cdf1/659_1q-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 619/659_1q-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/81aa565cae35109c3b14791846bd31/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.fastp.html 135/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/89342f9150d6179c80c1273bd30fca/659_ecd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 352/659_ecd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/99f29fc2c026e1aefba86642832753/659_epZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1527/659_epZ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/a183c6cfb9df6af87b6eb204948e92/659_dfA-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2198/659_dfA-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/60e15be44b0fb917572f7078e4e0c3/659_6i-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1759/659_6i-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/acac48a28890fbbbac914665897a81/659_bNS-T1-TRNA-1_B23MHV2LT4_1.fastp.html 146/659_bNS-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/411faf18683565d0c77fdab635b278/659_buD-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1595/659_buD-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e44877442cce936341042b9ede0a30/659_end-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2070/659_end-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/62f66b7bd0415c1fdbb3f644b44939/659_bCu-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1475/659_bCu-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/bb2c53c40123095e9ab2fb20dc6b5f/659_Mt-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2059/659_Mt-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/734022c3a9f5f7cef05732fa9f5226/659_wQ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 865/659_wQ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/34e3c5fdd1f41e8e6026107fa67b2a/659_cq5-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1074/659_cq5-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/ad4daf06f82c286b90b7247b1f3e47/659_ezg-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 843/659_ezg-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/c48d29e9bdb05478ae1b249fc540d3/659_dc8-T1-TRNA-1_B23MHV2LT4_1.fastp.json 88/659_dc8-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/511c5d39fddc7a5710a2c2ded8d473/659_bUW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 758/659_bUW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/26c8c1c3981df797c72c081ca7e128/659_end-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1503/659_end-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/50507ecfd751e53105b2b66d0b1a42/659_bIB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 856/659_bIB-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/dc09a7f820ea109d4ad4573ca6913f/659_cWx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1162/659_cWx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/e008211ea95aea625958b15f8a6f18/659_bUW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 349/659_bUW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/b2101293db8109ca6eea31fa703052/659_cIX-T1-TRNA-1_B23MHV2LT4_1.log 465/659_cIX-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c7becfc6f3dbfaf793679593a7ff2f/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 583/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d8f3d71be796d38b3aa96f0d6fc53f/659_epG-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 938/659_epG-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/732f0a34c2164dc29874feed2005b7/659_bUW-T1-TRNA-1_B23MHV2LT4_1.fastp.html 181/659_bUW-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0e82fd105c363c8146fbf9c779e01a/659_b4x-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 695/659_b4x-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/a4fa63197fdab95e1e338cf9d7118a/659_d01-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1328/659_d01-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/387cb8f47e302e21989973d2787084/659_dRe-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1478/659_dRe-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/15b646667e639f244149d982c57100/659_bGW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1988/659_bGW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/a3cdcb776adb3d4f8964f5fbb879e8/659_cWx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 562/659_cWx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/3f41be45ca15bbd23e9fa8a4e466e3/659_ePR-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1203/659_ePR-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/3087bbd26994f996757e8a537a5d63/659_dc8-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2164/659_dc8-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/db1053ffe0227645b3ac24ade6b6ed/659_cuO-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2218/659_cuO-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/8d894fda96891fb8b583e3b820fd5d/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 805/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/fe353bf0b8df75172bc9dd49a4e8b6/659_cwv-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1234/659_cwv-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/2a424c49fe808cb8ab31746c96e526/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1695/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/58c3a515be6fb292276903b039d209/659_b6o-T1-TRNA-1_B23MHV2LT4_1.fastp.json 7/659_b6o-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/2eadafd8972edbce6a598ea7b540a5/659_bCu-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1571/659_bCu-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/65ab67892676096835c4c92bf16fac/NTC_0001_0001_B23MHV2LT4_2.md.bam.metrics 1844/NTC_0001_0001_B23MHV2LT4_2.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/371a06526f11dc4eb7e37f2c046dc9/659_epP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 672/659_epP-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/87ae0e5d5ae41cb33b4c3dbfe48690/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 937/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/b1ad4c56aa51e6fa28c2ef91a6128d/659_bNS-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1487/659_bNS-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/911e9b1c24ae3e3d81f2a248868574/659_Mt-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1507/659_Mt-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/f1eeb59911aac3bd76ead44b232e32/659_Lx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2145/659_Lx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e85c6105597ca929fca017b175bb15/659_bTq-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2340/659_bTq-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4b244a803dc9e937533ad0f9bfa5c3/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1432/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/0a2a9efdb0fd5f3bb1a46b1bed3728/659_djb-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1786/659_djb-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/581ac138f8762a70a8ec2f3de44133/659_rd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1761/659_rd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/f1eeb59911aac3bd76ead44b232e32/659_Lx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2049/659_Lx-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/bfac66810971178d816cc6e1239065/659_eu1-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 505/659_eu1-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/805ab04c2f566754ae6411744eb2d4/659_bR4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 275/659_bR4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/1f23b589cb603986a8c25fe20977ca/659_cfy-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 299/659_cfy-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/61f4114927843a55c4cf828f140b60/659_On-T1-TRNA-2_B23MHV2LT4_1.log 461/659_On-T1-TRNA-2_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/27d82f68b22b121967cf11f35d9f7a/659_dwi-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1552/659_dwi-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/fcd6693183865c5c366926c649214b/659_Fr-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 280/659_Fr-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/4c238c810836ff25adbd8788916597/659_bCu-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1379/659_bCu-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/7aaa0627bf7c9c180fb6ec4ddb3c0c/659_djb-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2054/659_djb-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/327791df55b0a2ac57657e8a69c31b/659_wQ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 673/659_wQ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/8e44c33df0785b1de23f6a89a7e43b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 736/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f7a6c09f94c8830869309d32f5c65f/659_cIX-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 923/659_cIX-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/f2e9bbb06804291b4ba2c170dc3420/659_1q-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2187/659_1q-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/297b8fa8d7f6e3515df6852939e469/659_bGW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 935/659_bGW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/7aba3a61bd33be29280d688156244d/659_dcz-T1-TRNA-1_B23MHV2LT4_1.fastp.html 122/659_dcz-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3ca90681e4002ebd02693756864ecf/659_cq5-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1832/659_cq5-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/c77783584b27ea62bc22a29feaf309/659_djb-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2246/659_djb-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/6bf6f554d2d0b94635320da684c8ab/659_rd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 255/659_rd-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/a30572dea4a112632006769b028dca/659_bCu-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 707/659_bCu-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/9b36c89c2699e0323bd69e8f8cd553/659_rd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 898/659_rd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/9581e0d293c8fc09fe28f6f09a2fc4/659_Dd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1613/659_Dd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9568eef9ef8746782cb4174a62609f/659_On-T1-TRNA-2_B23MHV2LT4_1_seqtool_mqc.tsv 1967/659_On-T1-TRNA-2_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/325cc6f3f91a35a15edd2d532069b3/659_ezg-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1704/659_ezg-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/d6b68b89f7a3f4a949dcbebe83bd8c/659_Mt-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1793/659_Mt-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b8271e4391618825bf0c879d315105/659_end-T1-TRNA-1_B23MHV2LT4_1.fastp.json 76/659_end-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/dea8191e4c400549e4c0f3eb3789cf/659_dm4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1278/659_dm4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/d6697595e4813f8510c25f73a5e811/659_wQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1917/659_wQ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/b6db0d39735ac04c01422184599ff8/659_dES-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1777/659_dES-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/3455dad43b449be75cc8c22e03a3af/659_dXa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 307/659_dXa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/ca6141785511cb2b0e88aa84fb6f89/659_Mt-T1-TRNA-1_B23MHV2LT4_1.fastp.html 139/659_Mt-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/63ad5e0031bba7e23ae9e1ece9d619/659_bKP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 823/659_bKP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/f38b79b74633a4bf4df83aafd34605/659_Lx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 897/659_Lx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/13e16dc89bd16b0b4f51f119e2bc50/659_dwi-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1456/659_dwi-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c29b84cf216cad65fb09fb8a1e8647/659_eeB-T1-TRNA-1_B23MHV2LT4_1.fastp.json 19/659_eeB-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/eadad371d926349c2595bfe6b77aaa/659_bGW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1601/659_bGW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/612758fa4ba31128135e4cb552074b/659_ri-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1850/659_ri-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/b4c2469db7de0d8ab36890698d6d80/659_dQk-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1262/659_dQk-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/ae85e0a63083ef7000b0056f1c680e/659_d0M-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1932/659_d0M-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/fcd6693183865c5c366926c649214b/659_Fr-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 279/659_Fr-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/3bc88b58d1bf528e5cfbeac65b8d55/659_ePR-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 821/659_ePR-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a41d862fb0baa661f31776aac0fcf5/659_eGK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1441/659_eGK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/1e7a073df68f2c1a6261e2fd036c73/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 620/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/b7eeac8a158d7c6c301e4d0efa2a78/659_dkd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 975/659_dkd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/bc354d36bf1cdfe49242974d1f02cf/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 999/659_dRe-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/3804264b5738a4fe24496a8e6ad615/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.infer_experiment.txt 846/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/67e24fe5d1c9c8bbf1d805557368c1/659_egp-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2035/659_egp-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/6cfb35cbece73dc23af2c04f3b9d98/659_cwv-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 575/659_cwv-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/b6db69d2d48f16044c3ddfa9353c4b/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_2_fastqc.zip 1236/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/0b57d73ba814ebad0c940fca62de42/659_cGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 238/659_cGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/9cf72b3f6c7fa2dd3d70919784ed99/659_bIB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 361/659_bIB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/645c8ca4c5292e8b2c0e90d5d4c1cd/659_dQk-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 590/659_dQk-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/9c2cff7cfea9d9e7972ea943fe06d0/659_dKM-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1387/659_dKM-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/6a4e70f6ad7787dbdbb00b9dedd65a/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1129/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/ec95a2fbf3cca932cfed8843e566df/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1765/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/0453f33d04429692b11ed3673fada0/659_zO-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1898/659_zO-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ef81ed422c9d669adce81c91618cdb/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_trimmed_1_fastqc.zip 385/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/a89875553692cc5f93951e33a7dbc4/659_eeB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2036/659_eeB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/60763466f6bf63c4440e6e73552de8/659_cRB-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log 2148/659_cRB-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/797fb2eb17f69affb0ce20b6ecf7de/659_ri-T1-TRNA-1_B23MHV2LT4_1.fastp.html 123/659_ri-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/9c43bdb841910e432b707a3371459c/659_Kh-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 675/659_Kh-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/7f7c635e8d998f1bcf1c17d35671ef/659_ePR-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2017/659_ePR-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/59147cc8d23b812d80c0811aeef823/659_zO-T1-TRNA-1_B23MHV2LT4_1.fastp.json 81/659_zO-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/f12c8aac97011ba939cff95be5f5c3/659_epP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2010/659_epP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/20df32a6d469479d6765d333a5d440/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.pos.DupRate.xls 1799/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9a17c343212d0644bd74ef8e9c6353/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.attempt1.command.log 2208/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/a9c26d7e9badedb65769cc23d357a5/659_Dl-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2350/659_Dl-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/9cfb2910867b5cc9e7be709ff1993c/659_d0M-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1260/659_d0M-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/a9ea27c0163745517a11fe353b11ce/659_Dd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 344/659_Dd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/7ec34bfd5fd4c1d387beacc673adb8/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_contamination_mqc.tsv 1596/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/fb5b068efb3bc34a566631a4b82f74/659_cAa-T1-TRNA-1_B23MHV2LT4_1.log 393/659_cAa-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/36b17be95a010b50103a7374f8b76c/659_bUs-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1513/659_bUs-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/2b967d327526cd874424ddafac86d2/659_On-T1-TRNA-2_B23MHV2LT4_1.lc_extrap.txt 2107/659_On-T1-TRNA-2_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/3a29a5d339ce547a7a1404c9b162ff/659_cGW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2232/659_cGW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/81fc72c859884b8310c8cd3a581d0d/659_dwi-T1-TRNA-1_B23MHV2LT4_1.fastp.html 112/659_dwi-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/d98b4237bb5d8b0b37c3a03f9f41ef/659_bGW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 530/659_bGW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/12e60e3a49ea7e047d6cdd323a2604/659_cAd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1675/659_cAd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/7bfd964550f952ed65c6836d83425e/NTC_0001_0001_B23MHV2LT4_2_kallisto_mqc.tsv 502/NTC_0001_0001_B23MHV2LT4_2_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/43d9447dfb00598b012dd0050f3f2b/659_cGW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1101/659_cGW-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/c0185d7efa3a8ccdbbebffeadc936f/659_Kh-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2019/659_Kh-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/af9c3bc876ff73871297007fd5fedf/659_cAa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1834/659_cAa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/0263c078da03626598901a326b7baa/659_e0S-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2033/659_e0S-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/7176595ef1d7febcef55fab050578c/659_Lx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2241/659_Lx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bd5a93e7706d18a116b877d0cdbc2a/659_eu1-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2041/659_eu1-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/7947fc1f5d159eff01f5d7e74e7341/659_Wm-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2022/659_Wm-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/8758677caf01fc9f465f4a0d243a41/659_bCu-T1-TRNA-1_B23MHV2LT4_1.log 418/659_bCu-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/603d2abca42a8ec608cc9b117d629e/659_d0V-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1931/659_d0V-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/36e20ce742df9d085817b6655d2895/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 858/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b36ef711bef87db5fc730181423262/659_Kh-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2211/659_Kh-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/47d6023998cb2fd74dbd4601e8dc58/659_cTi-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1494/659_cTi-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/4ef416ea6ff512f66747a87d9e238a/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 265/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/342bd865d6efcbc7d80f7597f1fa94/659_bR4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1133/659_bR4-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/ef3d7a6d06458ab7c7bd4462924c74/659_6i-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2143/659_6i-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/1cc2fbb596a219f2270ee987d8e9ce/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1127/659_dRe-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/7e457d382a04ff9cc1548e93968734/659_cTi-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1391/659_cTi-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/034fd1723ba9464c68609bb3a0448b/659_ezg-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1983/659_ezg-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/59147cc8d23b812d80c0811aeef823/659_zO-T1-TRNA-1_B23MHV2LT4_1.fastp.html 177/659_zO-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/3072f86bdd9bd2dc28e53db9b56cf9/659_Kh-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1443/659_Kh-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f3c9ddce60573e95efac01d5077397/659_bUs-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1343/659_bUs-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/3af61c47112623a01192a2ed6d155e/659_cRa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1422/659_cRa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/ecf289ad6a31a97520ffa75f100059/659_dRe-T1-TRNA-1_B23MHV2LT4_1.log 423/659_dRe-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/29813b8d3ee724fab9ee2f0b8e483b/659_Mt-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 647/659_Mt-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/a3d28d087c05519c7df87629498d66/659_bTq-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1894/659_bTq-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/7982de56f45526ea73a08e6bc90cae/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2375/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/364370d7571d01fe09b0c6da8ac61a/659_eHw-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2348/659_eHw-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/2e25d0ecffd8af3074c27fddd024e0/659_dES-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1299/659_dES-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/29cc36d62a973ec73aaabca791f624/659_eHw-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2073/659_eHw-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5cf560e71ed89677770d5ef41cd79c/659_buD-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2173/659_buD-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/f46fc5d311c7dcb9f2ab36c839b5fb/659_cVw-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1426/659_cVw-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/4acdcbd7c5141fff711d41e6f5a029/659_ezg-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1191/659_ezg-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/b8ed03e1576414c894bd6ed323db47/659_dts-T1-TRNA-1_B23MHV2LT4_1.fastp.json 73/659_dts-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/90b1bb2bd20c447905eb8e3f52b886/659_cYf-T1-TRNA-1_B23MHV2LT4_1.fastp.json 64/659_cYf-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/30e253fb799844b18626d502844560/659_SP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2256/659_SP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/3cf1dababdb7b9c924b5e077a445e1/659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1896/659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/22cf9546f65de0b300bc8332a0d0bf/659_dRe-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2051/659_dRe-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/9af65be7fc52932a3e1a007c56c458/659_dts-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 311/659_dts-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/c0c385fe1a9eaef21d79a0e5f55d5f/659_bUs-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 845/659_bUs-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/e36e92543ba5b7f3f93b397435c476/659_bNS-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1681/659_bNS-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/4861f0c39cfaacf285499613d9f005/659_On-T1-TRNA-2_B23MHV2LT4_1_2_fastqc.zip 1150/659_On-T1-TRNA-2_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/631e4485bba864669ce54655fcf3b6/659_dHy-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1329/659_dHy-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/363c4735509e488ba78b818ca00f49/659_egp-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 595/659_egp-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/68712cdb0e2de30b7bd7813eddf308/659_cB6-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2104/659_cB6-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/96d9e1246d595e4408164277d2b207/659_zO-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 320/659_zO-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/c7666c7d9138c7bb745747fbec362a/659_gK-T1-TRNA-1_B23MHV2LT4_1.log 471/659_gK-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/a3a526c4ff2f3c4c64a3d1431b612b/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 37/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a2ea4c0699f34f7e093081f76c2e3a/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1995/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/39de2a87a55fd189b1011e5533ea6b/659_dQk-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2030/659_dQk-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/76b7d9501b6ae553a79572d8113833/659_cRB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1469/659_cRB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/ffa3088ce9016d247b97b6fedfefbe/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_trimmed_1_fastqc.zip 379/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/b8f8c87dd09599a9c5c0311e2153b1/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 762/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/7aa18e09b73eff237f104f994e14c3/659_cYf-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 903/659_cYf-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/d278e313b514c836a6d9767867f135/659_dHy-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 365/659_dHy-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/71140694db4992920b8ea062b0d90a/659_dHy-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1616/659_dHy-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/c10affc5ed19ea76187989135ef80a/659_djb-T1-TRNA-1_B23MHV2LT4_1.log 455/659_djb-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/ec946d90ad8a32aabfc9f06af4fcfc/659_cRa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2190/659_cRa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/78ed45577d348dccfbc09c87b7d287/659_ePR-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1011/659_ePR-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/cb4694f2e47df597db6db734a3d265/659_eHw-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 537/659_eHw-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/4176509dc8a8c2904101cc08475050/659_On-T1-TRNA-2_B23MHV2LT4_1_preseq_mqc.tsv 2299/659_On-T1-TRNA-2_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/5240212926be1885bdf0fd40a220a8/NTC_0001_0001_B23MHV2LT4_2_preseq_mqc.tsv 2230/NTC_0001_0001_B23MHV2LT4_2_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/7d6213127a5999d8c44774fee29887/659_dQk-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1358/659_dQk-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/044b42d51e1abb4bacf4b558db8273/659_ePR-T1-TRNA-1_B23MHV2LT4_1.fastp.html 171/659_ePR-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/b95aaccb28e1a8f5b96d4c04fd44ad/659_bTq-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 347/659_bTq-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/2dbc7a532be0a5befcbeff7862ba9b/659_cwv-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 358/659_cwv-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/1e7a073df68f2c1a6261e2fd036c73/659_bR4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 716/659_bR4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ee3d9b6b8703109354dee2a1a96d82/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.ReadsPerGene.out.tab 741/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/be20366f5d23c8578b9db9222f81a6/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2095/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/8d52a696f2d6eb77e90f5554a244b2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 700/659_bMa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/17ca865f809c576a7d3d73fc186338/659_cfy-T1-TRNA-1_B23MHV2LT4_1.fastp.html 161/659_cfy-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/86e34af829981115db1d6ad077c0d7/659_dES-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1877/659_dES-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/c30129f716b070a69120a8c1593e58/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 326/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/12748a2fb4b4c9412d29303e0f1f1f/659_end-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1991/659_end-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/65e236d8a4b055929d62b19afb2401/659_bhK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 734/659_bhK-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/f9b2a6fd5be6955ba69ad9ff8d41cd/659_bKP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1397/659_bKP-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/66a44c7fb33bc9adf34ba8923484fe/659_cRB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 606/659_cRB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/26b5e2460699e8df11859a92ec13ca/659_dKM-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 815/659_dKM-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/59abf2e358a2192e6d655fb2e63038/659_end-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1697/659_end-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/984d862ccac2be38f3020f519019e5/659_epZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2165/659_epZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/69bc7ae6794b77defd02489b3f6d7b/659_cq5-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 585/659_cq5-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/03d91e01681f82f7d80df4512e67f4/659_dQk-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 878/659_dQk-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/12e14382f8e201b741cfd7454c61a3/659_cRa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1809/659_cRa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/4f47384de677f35695e41dbf4a8832/659_bNS-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1611/659_bNS-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/566f92c3e4f554dcc8782607581ed7/659_bua-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1404/659_bua-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/6194cbcf1a6798cb86b61ae5c4d507/659_Dd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1520/659_Dd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/7a01a26714ac01e40b47fbc221100d/659_b4x-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1655/659_b4x-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0eef7e6edf10aedfa23925883965f0/659_e0S-T1-TRNA-1_B23MHV2LT4_1.log 401/659_e0S-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/9319a087a4b07c5196a3f23e4ac1f8/659_cVw-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1914/659_cVw-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/7f2a149e2ad074aad8ca8baf7d9551/659_dts-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1713/659_dts-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/be20366f5d23c8578b9db9222f81a6/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2191/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/2ec9a35daaec197eb1e38dd3d6a5b1/659_cB6-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 364/659_cB6-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e7dcd74675645a56081889eb6adb04/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.lc_extrap.txt 2071/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/806124844d2ac65bc9d3bf48cb5399/659_8h-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 483/659_8h-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/7e5e45776fe6dff7ade0524d6ff2b8/659_dc8-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1209/659_dc8-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/dbc1fb1116e6cadabec3fabfc1d1be/659_cuO-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1546/659_cuO-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ff34ed3def0c567037fe59a6998ba0/659_bIB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1049/659_bIB-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/764b59d23365378eac5f1eeebd8947/659_Lx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 258/659_Lx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/92a31d7727a9a7fbab9fca194c967d/659_R1-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 870/659_R1-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/7ac2e3a67d493692b1622419b58e59/659_dQk-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1550/659_dQk-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/38bd73ec7e545614cdebf33c840ce1/659_epG-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 318/659_epG-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/5519fc2472539543138d2340002fd4/659_cRB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1661/659_cRB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/cc59f3dd7bbb552292712142f0678b/659_bKP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1012/659_bKP-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/74fce0852168cf5e5950e285756bce/659_cwv-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1338/659_cwv-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/613748ec39d8b3d733a1ac7bd9f297/659_Fr-T1-TRNA-1_B23MHV2LT4_1.log 460/659_Fr-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/8b05828491b882a9182ce17a024cd6/659_ezg-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 939/659_ezg-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/6df796591cf1945e6159c630a71cdb/659_Dd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1327/659_Dd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/734494923d025fde46af8697a9641f/659_egp-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1747/659_egp-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/da2633316b6001a786b41cb27dd5b7/659_cWx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2168/659_cWx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/bb1eca49e0df2b8450be9cb11d65e1/659_Kh-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 197/659_Kh-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/87513c95f0bc679d21a05601aa5e1a/659_ecd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 822/659_ecd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/64ef52b40b6cd138ad1b7e476022e4/659_Dl-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 991/659_Dl-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/217d59ca4e572b6c7819ea6062f5aa/659_rd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1666/659_rd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/029f293c28a39c1b654aac92299c98/659_dHy-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1909/659_dHy-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/034c65107810d739f36d36ad487f4a/659_cB6-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 761/659_cB6-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/9c0375b81346d072bc5f18444254dc/659_cAa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 489/659_cAa-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/fef59f2796b5d39b684bc5856ec4a3/659_epZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2261/659_epZ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/1abc5fc90de41b6660916644d2acd3/659_bCu-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1954/659_bCu-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/790475faea7a2d0e4e536f771ee218/659_bCu-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2374/659_bCu-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/b3/c8a22bbc0b4665f41455e03820e4a8/workflow_summary_mqc.yaml 2/workflow_summary_mqc.yaml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/bff38d843ae542aeece183ff9847d6/659_dc8-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 643/659_dc8-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/217957b7f2bf6e141a62e81a2f76d9/659_dES-T1-TRNA-1_B23MHV2LT4_1.fastp.html 164/659_dES-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/e74fc0500852cc2e29fb6dcdcaa840/659_SP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1979/659_SP-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/cde5b7d09edfc54cd30d21f427f322/659_zO-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1321/659_zO-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/ddf2f080d062f9d676a9273717816a/659_Fr-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2300/659_Fr-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/37f0c86214beed032ec6211ca3945c/659_Dl-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1760/659_Dl-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a5f6fb2af18dd9c696cbd975302694/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 745/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/de91ae38ad8a47d8ae353965be6809/659_bKP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1141/659_bKP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/d98c48cb8def5f13c0aec11b74f3ea/659_dKM-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1871/659_dKM-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d74c830018a037b6886f8816168bcd/659_eHw-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 383/659_eHw-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/6a698e5a942469a61dcf5c069c4e55/659_cRB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 250/659_cRB-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/9d1650778f7a3213c33109df27a42f/659_cWx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 334/659_cWx-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/ff74cada23a6764b6f4ea7a7073345/659_bKP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1587/659_bKP-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/c3f7a7743e710f99fa8239d12d9647/659_cuO-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1354/659_cuO-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/824703fcaa51d9bfdc0efa2f509107/659_8h-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 772/659_8h-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/7bc9297041c9f5c15018cc24b6bf42/659_cwv-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1683/659_cwv-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/612a6d6eaed4899c8be5a487428fcb/659_bNS-T1-TRNA-1_B23MHV2LT4_1.log 445/659_bNS-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/078fa0e07ccaa921d8e3c7ac585164/659_bUs-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2281/659_bUs-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a6a6892bf64dc939eeb55787aeb910/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.log 452/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/0b5d1214f2544c032213f5656774dd/659_cB6-T1-TRNA-1_B23MHV2LT4_1.fastp.json 59/659_cB6-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/e3c0e3376886e87a12ef9b339ae337/659_R1-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 200/659_R1-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5c3cd36e287d760d4de47cd6bbb2b8/659_d01-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 621/659_d01-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/773b662f641386b1fc8b3ecbb159c5/659_d0M-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1452/659_d0M-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/2a2e405fdfdb67f09baf48806cc4a5/659_cIX-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1981/659_cIX-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/978af2fb616438447359f6b17b2253/659_Mt-T1-TRNA-1_B23MHV2LT4_1.log 443/659_Mt-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/c26794143313b5eeb70e47f5505d06/659_bKP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 558/659_bKP-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/e33edb527f70b7a7d390818011a6da/659_e0S-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1939/659_e0S-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/f2d6ddc726d4b4ab9240f7a257e71f/659_Wm-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1349/659_Wm-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/325d54b523ff6a14adc3e4cbf36a80/659_cRa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 755/659_cRa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/70e5ee565cee34f67e04097a8608e1/659_epP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2199/659_epP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/2b0bcbc03a386fe10991205a55bd4e/659_dm4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1374/659_dm4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/c4c55ca90e35761645cd39c6bea560/659_cwv-T1-TRNA-1_B23MHV2LT4_1.fastp.json 96/659_cwv-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e4de7f81f3f6e8798c34f8509ef098/659_bTq-T1-TRNA-1_B23MHV2LT4_1.fastp.html 180/659_bTq-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/1a17c17f975dd669dc904d975258a1/659_R1-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2117/659_R1-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2a188e39b3400a17c84a3dce6b048f/659_eHw-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 766/659_eHw-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/c98962d1e7f247b9f031da2f880a70/659_d01-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2329/659_d01-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/f54ca0e3ccccbf44a62dc16366b488/659_cWx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1631/659_cWx-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/142a2b1c40203bbafcf7463766366c/659_cVw-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1218/659_cVw-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/e7cb7b991d930658896ff4bb437f7f/659_cfy-T1-TRNA-1_B23MHV2LT4_1.log 451/659_cfy-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/f42852eebb6532fae3bedf1d9f820d/659_bTq-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1598/659_bTq-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/f175cd16c66dba9fdd2cfc950b818a/659_bMa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 245/659_bMa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/024b171edfe8bcd4785c60a0ef3ead/659_ecd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1688/659_ecd-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/68aa751049a740b5688dcfe40f139b/659_dRe-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1767/659_dRe-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0f2907ad98afc87039b34fdfedf478/659_bMa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1660/659_bMa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/37bc4fae3229c2395b74f3eca61f4c/659_8h-T1-TRNA-1_B23MHV2LT4_1.fastp.html 99/659_8h-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8e9c3b82183a03d8bd8124bc809879/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.Log.final.out 671/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/5b754931d74af53caf11cab5fb68c8/659_ecd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2110/659_ecd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/b8ed03e1576414c894bd6ed323db47/659_dts-T1-TRNA-1_B23MHV2LT4_1.fastp.html 169/659_dts-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/ddb6d9062410b103d450f8c8d9f8ac/659_rd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2144/659_rd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/0c18b5dd04106f086d816b77027f94/659_eHw-T1-TRNA-1_B23MHV2LT4_1.fastp.json 97/659_eHw-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/9f6697b238e633d4ca24db595c9d51/659_dKM-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2056/659_dKM-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/8677b713597b8b7836cfb129b77cf4/659_eGK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1056/659_eGK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/0f2193188dbed48e61733e54d39684/659_cRa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1041/659_cRa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ec6b8a85a1ab9b9a809d5b64b68504/659_eGK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2210/659_eGK-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/de7ef00ab6f1d33edccf087027d0ae/659_cVw-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2349/659_cVw-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/732f0a34c2164dc29874feed2005b7/659_bUW-T1-TRNA-1_B23MHV2LT4_1.fastp.json 85/659_bUW-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/11e7b950f8fb06f6b1d4c3139efa16/659_dts-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 916/659_dts-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/9d1650778f7a3213c33109df27a42f/659_cWx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 333/659_cWx-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/cf98d4ae40960a8054f06ab6c3fc58/659_Wm-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1253/659_Wm-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/993a8792db05b513ead9a996e154ef/659_c95-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1516/659_c95-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4e0cee82a0364914bbc9a14f586d5c/659_d0V-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2029/659_d0V-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/8b7f7b24aa1c51486ec429a2f1e60e/659_dts-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1156/659_dts-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/14cd909d66272a3620eeaa8b0974c8/659_ezg-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1320/659_ezg-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/8953730ebd3b00aefe5c6c7d815084/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 55/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/491b03508508a564e454d20d987c54/659_bGW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 648/659_bGW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/cc429ec04e569ba3dd60f6a6e0487a/659_dHy-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1042/659_dHy-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/60763466f6bf63c4440e6e73552de8/659_cRB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2052/659_cRB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/ebaddb10f8aa4ace8ed4c54ea8cb1b/659_cIX-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 331/659_cIX-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/3898cebddd365113d48b2cc2b98608/659_e0S-T1-TRNA-1_B23MHV2LT4_1.fastp.html 113/659_e0S-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/56eca9c3a49282afb6493d55bba715/659_epZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1230/659_epZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/204ce1e857b615852f05fbefbd2c81/659_cYf-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1769/659_cYf-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/63b50f973802681dfeef29a28e952a/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 51/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/4f87b59e09841c76a7435e87e04034/659_dm4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 248/659_dm4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/13749158ed9cefd774f25f8bc1c868/659_Dd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2205/659_Dd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/51d610a9207c11f9afaa52801e9fae/659_buD-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 730/659_buD-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/faef55128adc2ba84bbe825e77a5f2/659_bTq-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 833/659_bTq-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/f40cad185b3a0aede13487a02b022d/659_eu1-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1104/659_eu1-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f00cf4b2544cfaa22d6d1b6f8a12df/659_cq5-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2025/659_cq5-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/b3d99bf4178eb1456cc771c559467a/659_eeB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 596/659_eeB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d44fec9761bd164bfebf388a1ad046/659_cAd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2053/659_cAd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/017a746d5ad8ae05acc37a06732603/659_Dd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1044/659_Dd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/48a0fe4ec268d1757d43ad66529aa4/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2074/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/42e532f72481febd58dc46e047d0ba/659_dcz-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 891/659_dcz-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/9ed237a5c08ea74ef5231c58215a58/NTC_0001_0001_B23MHV2LT4_1.fastp.html 117/NTC_0001_0001_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/fda50b2bb4f3dab07aa2fa19c447f3/659_bGc-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1668/659_bGc-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c0b73517a169c5667aaf9e3a3efe8b/659_dcz-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 241/659_dcz-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/beba408f47bc1134b8ab1fcc081b00/659_bhK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1403/659_bhK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d820dac02645da51b5776468b642ad/659_dwi-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1086/659_dwi-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/fa24b1fe2065052642b9fa0a156830/659_buD-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1017/659_buD-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/550edce1579ba6da0719860b80fb1c/659_bNS-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1973/659_bNS-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ae0a615b629acef0ca7e72bc784186/659_epP-T1-TRNA-1_B23MHV2LT4_1.fastp.json 91/659_epP-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/86705bde8f51aa17867cf545c9d5bd/659_cVw-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 571/659_cVw-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/57357a5ab29d39572412f965494560/659_On-T1-TRNA-2_B23MHV2LT4_1.fastp.html 140/659_On-T1-TRNA-2_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/897cc3ebb3022f89c0767cb323a467/659_ecd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 630/659_ecd-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/ab7bab79eb0a61547a00851f6907d9/659_1q-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2283/659_1q-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/f294456ceba2fdbf71dc11ccdb2148/659_dfA-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1312/659_dfA-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/dd7f19693a42c8c9eec01394030cfa/659_buj-T1-TRNA-1_B23MHV2LT4_1.fastp.json 8/659_buj-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/d8d2ddc92a85ec2175c37030716530/659_bhK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1691/659_bhK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9b2f8680b9e3765fb293bd5ed4c213/659_bGc-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 274/659_bGc-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/665ab245221b3e55e42d0029a95823/659_djb-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1966/659_djb-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/83a568bc882f948b7cb3e6d0c8651d/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.inner_distance_freq.txt 933/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e88fff4b6c60d683d7eb8f9f9fd38e/659_djb-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1594/659_djb-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/d16f55cd7aa95ed25939050c18cc9f/659_dwi-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 592/659_dwi-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/db02403d556264c34d57ec0621e325/659_cYf-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1195/659_cYf-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/0bbc1efb846c6b59acf50982fda0c5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 996/659_bGc-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b9ec44916b4790be7e0e29614e8047/659_wQ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1058/659_wQ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/8d2524c761f8d871fbf8db716e538d/659_mK-T1-TRNA-2_B23MHV2LT4_1.md.bam.metrics 1860/659_mK-T1-TRNA-2_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/5ac133b273f4f53a41d219c4c4765c/659_Lx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 609/659_Lx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5b5ae5460b743040ef3b55ee0c251e/NTC_0001_0001_B23MHV2LT4_2.attempt1.command.log 2134/NTC_0001_0001_B23MHV2LT4_2.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/948c266572b5ffb877484bc783259c/659_cAa-T1-TRNA-1_B23MHV2LT4_1.fastp.html 105/659_cAa-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/78afe6ef2decddd3a0e1c2a1ff77a0/659_On-T1-TRNA-2_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2322/659_On-T1-TRNA-2_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/336a5b4acc87582fcdb34073fc0197/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1334/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/132a092a311ff990a93d755cf0919f/659_e0S-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 881/659_e0S-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/4b8838c12bcf47d49360f38ff4a021/659_cVw-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 759/659_cVw-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/ed85f05598a65374c47cc7a80ba166/659_cTi-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2274/659_cTi-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/0de64f7d5f228f4e87b4b9b14dba16/659_dkd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2223/659_dkd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/6275240229a0c8b0b46d0062cec974/659_dKM-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 524/659_dKM-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/953ff7c9b338b375751f9aaeef8a16/659_dXa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1674/659_dXa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/78fb0679dd6da10497f95c4fe06559/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.attempt1.command.log 2192/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/61d032963f4064be98d0f4dc31e4cc/659_d0M-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 876/659_d0M-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/271dd572dc702c0608f111237d9389/659_bUW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1045/659_bUW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/0e81c31ad87267a73968b427802206/NTC_0001_0001_B23MHV2LT4_2_rseqc_extra_mqc.tsv 1366/NTC_0001_0001_B23MHV2LT4_2_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/867071e78dda21304347021f8f7268/659_cfy-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2378/659_cfy-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/3a9801d04a5ebdc274fcbf7a5fc154/659_dfA-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1024/659_dfA-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/6c085ca1cab5490524d5e965644065/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_kallisto_mqc.tsv 566/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/d1380602da4d3dbdfac0ad20135ec9/659_6i-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 895/659_6i-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/58392918920f15153ecc8f578aaf73/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_2_fastqc.zip 1248/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/8392eaf99ea5c7599f81720e37d8ab/659_dcz-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1371/659_dcz-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/5c94e97423074cb4f774c022ecc421/659_cfy-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1970/659_cfy-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/48878cdcc5af41734fb2accb1f18a1/659_rd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2240/659_rd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/752d4308c2c3d844c574cfe2918b37/659_b4x-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2308/659_b4x-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/c515382df845cbc5da68cdec750d4b/659_bGc-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 804/659_bGc-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e357db7c8fed460c82749259e67f9a/659_bUs-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1708/659_bUs-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/f153d8b3fb2717655285387538153b/659_zO-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1989/659_zO-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3c4b95e7e912d5d849d2dc0f26122e/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1522/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/0b57d73ba814ebad0c940fca62de42/659_cGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 237/659_cGW-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/4f4c9d347595a98c53029fd9eb7169/659_cWx-T1-TRNA-1_B23MHV2LT4_1.fastp.html 159/659_cWx-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/8f90f2733f0a989cb85bc595df61fd/659_cTi-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 533/659_cTi-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/71e440018e5a1cbe0747a3fc9f35d1/659_d0V-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1741/659_d0V-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/68aae3f355ef82eba1c74a35942c6d/659_c95-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 293/659_c95-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/81d4deae5dd621f64eafa3c5c37fd2/659_d01-T1-TRNA-1_B23MHV2LT4_1.log 453/659_d01-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/b8337676359ab51615a0a1e5e38d99/NTC_0001_0001_B23MHV2LT4_2_seqtool_mqc.tsv 1941/NTC_0001_0001_B23MHV2LT4_2_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/5ad4463bb60a9f509b930cf635243c/659_d01-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2293/659_d01-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/f05d65002e96d651f67d4dbe505039/659_dts-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1297/659_dts-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/4ade6b107bfedc25ca98e644e4649d/659_Mt-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 936/659_Mt-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/25703d63982be3a1d98999f7472b16/659_eu1-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 793/659_eu1-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/543a4b626e9bdcfb9584c302d994e6/659_cYf-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 711/659_cYf-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/8a3b5e1a93d7f1ce5ca64c377857ab/659_eu1-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1465/659_eu1-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/6809ea3e1be25b7bf148556d2909dc/659_d0M-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1356/659_d0M-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/0361c2a1ad6ced2af8370fb65217dc/659_dcz-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 795/659_dcz-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/79630e090c7b1c2dae8a40779b93db/659_epG-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 746/659_epG-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7e09804cc26915f29a63cea6258286/659_mK-T1-TRNA-2_B23MHV2LT4_1.ReadsPerGene.out.tab 710/659_mK-T1-TRNA-2_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/ee049edde0483d13c6c276616d6812/659_bIB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2012/659_bIB-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/6b6c22e2a9575aa380782e500bb82e/659_bGW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2272/659_bGW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/8f11db91ac28ff02975ecc4f4a85bc/659_zO-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 535/659_zO-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/a1ffb7ca855438ea398525bd66088c/659_d0V-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 973/659_d0V-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/54cdc38908592af939e95b8ae00399/659_bKP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 284/659_bKP-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/627202e6f89f3ad505f742c90388d6/659_b4x-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1751/659_b4x-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/a183c6cfb9df6af87b6eb204948e92/659_dfA-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2102/659_dfA-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/3cc35918bf266fcb168ad45329f1de/659_mK-T1-TRNA-2_B23MHV2LT4_1_contamination_mqc.tsv 1573/659_mK-T1-TRNA-2_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/b2747ffa86629904b5d6806015c1c7/659_d0M-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 780/659_d0M-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/037912e17f9b3e5247a57efed1290e/659_egp-T1-TRNA-1_B23MHV2LT4_1.fastp.html 116/659_egp-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/f7e1545f1d7d676c172aa4032a28ab/659_bua-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 831/659_bua-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/4404860d2782ffbb76eff03978fdbc/659_b6o-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 775/659_b6o-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/d727b60a5659af8e49c4f1bd918ec1/659_gK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1905/659_gK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/f63b4f26b789a0387d81e1875f0281/659_c95-T1-TRNA-1_B23MHV2LT4_1.fastp.html 154/659_c95-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/ff2333d8fefe39b307019572ea4af0/659_buj-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1352/659_buj-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/00e25af8c21131206829beb5a14e22/659_epG-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1414/659_epG-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/0807517a77644c1e7dc31afeac3e5e/659_cIX-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1686/659_cIX-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/60d5845ac0bc4e545d10f98f4cba47/659_d0V-T1-TRNA-1_B23MHV2LT4_1.fastp.html 109/659_d0V-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/91e7c1a0be1e1cf57d00c8c74777f6/659_On-T1-TRNA-2_B23MHV2LT4_1.ReadsPerGene.out.tab 712/659_On-T1-TRNA-2_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/7ce675865c82e37a1ba9c2f609451e/659_buj-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1544/659_buj-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9c5bad26ebd5066e58d3dc00126205/659_eeB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 227/659_eeB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/f0f5545da1125e71bdb8072515e43e/659_eu1-T1-TRNA-1_B23MHV2LT4_1.fastp.html 121/659_eu1-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3abef117b83aa655c423bafaec34a3/659_dKM-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1153/659_dKM-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c30e2663df505538b0026de58114c9/659_c95-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1200/659_c95-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/26604618461dc34e87d199fa4b4805/659_mK-T1-TRNA-2_B23MHV2LT4_1_1_fastqc.zip 1131/659_mK-T1-TRNA-2_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d4a5acbeb9c7fb47778824696d0767/659_6i-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1375/659_6i-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/04b21570d0ac4f65c2e3fcde687c12/659_bCu-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 899/659_bCu-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/ec155f2bf526a484e1355570250cbf/659_epG-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2258/659_epG-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c3bd4fd12aba52884bf35b65a3e111/659_end-T1-TRNA-1_B23MHV2LT4_1.log 457/659_end-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/56f7caf8cc31156bc9e0c97d4a4111/659_cq5-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 969/659_cq5-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/6f3840c66bbb915cf163e8ecae2b78/659_bKP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1784/659_bKP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d33bc63f9d672642cc5d74171216f1/659_8h-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 676/659_8h-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/79630e090c7b1c2dae8a40779b93db/659_epG-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 650/659_epG-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2ff3a1aa41330e412dbb6d481f4b06/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1703/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/b9e20a0ef499f89dca8e59e17a8e58/659_bMa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1564/659_bMa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/d41ca4226eecac80c6dfa65edd5e44/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1429/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d86e84f8c63e5f442612805121dcc4/659_ezg-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 340/659_ezg-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/7e01f0e6c2c4075dfe2d829aab73b0/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.fastp.json 93/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/0058c700e02db51ecc00715083620c/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1310/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/122e27f895aaff4b3c2de6759c5911/659_8h-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1059/659_8h-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/4c6b847f10b449472a8dc629e88231/659_dKM-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 718/659_dKM-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/8b4bffaac9820f19554b2a79a1f12a/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 626/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/2ab5b1760f687bc45efc3d5bf41e1c/659_Dd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1237/659_Dd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/0c5e2ab8d7f923219be6d64447d00c/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 998/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/fbb1cec44b97777379bc5619a9552f/659_dQk-T1-TRNA-1_B23MHV2LT4_1.fastp.html 110/659_dQk-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/50504c8a5ef760cfc3d768d808f5fe/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 543/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/d278e313b514c836a6d9767867f135/659_dHy-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 366/659_dHy-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/38b3c8ccc9b5ee2e1e030792c24068/659_ezg-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 651/659_ezg-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/63250a38a360853e37b0d633c34efe/659_zO-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2253/659_zO-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/3f6098728d4d215405f8c6d5fdb282/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1574/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1799c94b6823987411b0ca45a086e9/659_egp-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1651/659_egp-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/dd7f19693a42c8c9eec01394030cfa/659_buj-T1-TRNA-1_B23MHV2LT4_1.fastp.html 104/659_buj-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/63cea4aab131b3bbf0178d470dc4a0/659_R1-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 966/659_R1-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8f5ed72ffc9ac6fb3018ea39c51f7a/659_dHy-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 757/659_dHy-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/32ad88a83d79e93b22747c38b97599/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.junction_annotation.log 1034/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/2c106d0e4ad297871d4307fa8b387a/659_dXa-T1-TRNA-1_B23MHV2LT4_1.log 429/659_dXa-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/119e51608be087eed1fc87849090b2/659_b6o-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1543/659_b6o-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/83212baae6e7620769f305b35de431/659_dts-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1876/659_dts-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/a6d52e33345af2abc136a95db3e09c/NTC_0001_0001_B23MHV2LT4_2.junction_annotation.log 982/NTC_0001_0001_B23MHV2LT4_2.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/580911f77c666b353cc1d45eb1db9d/659_egp-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 229/659_egp-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/a07f11b92938d327e30f48c7c694a7/659_cAd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2321/659_cAd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/9adb0ff788f5b4f1562fe93a6c1564/659_ezg-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2252/659_ezg-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/b388c836372c957e0af9abd548429a/659_On-T1-TRNA-2_B23MHV2LT4_1_contamination_mqc.tsv 1577/659_On-T1-TRNA-2_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/37b4f9a4a6ac70db9c3da541ee09b5/659_dwi-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1264/659_dwi-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/407d3e9cd221f8abf826a14cedcc09/659_gK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1138/659_gK-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/3b4da4ab75b8b05e66d56e521132d6/659_ecd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 577/659_ecd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/d495a24d05294bd50f841a238946bd/659_bUs-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 370/659_bUs-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/f41e4086ddab81542c22504e36902e/659_cuO-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1642/659_cuO-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/1a104c56e2cc49cba8912836482470/659_ezg-T1-TRNA-1_B23MHV2LT4_1.fastp.json 78/659_ezg-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c426ebe55782a2bbfff3012f412b91/659_buD-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2269/659_buD-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/0263c078da03626598901a326b7baa/659_e0S-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2129/659_e0S-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/98fc2d3019e645de9165088beaf371/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1818/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/6e0d341d42a94f49161252cef23de5/659_6i-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 703/659_6i-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/b7e1c99cf263e569aff6dcf83048c8/659_1q-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1578/659_1q-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e1e056b6eb2ee0a0fef250f3b766e9/659_cAa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1259/659_cAa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/449fc6c7d54abf326820bf29d79695/659_1q-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2380/659_1q-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/8046dc29bc10de688d3470bdfdc3f9/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_trimmed_1_fastqc.zip 381/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/1af941aa95a22b77637ccff85fb421/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2376/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e4d41808a5e41d27b53ede012b1de5/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1382/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/ad8bdb9d05c9dbc6efab5ebb2f89b8/659_c95-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 848/659_c95-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/38d742af325969cceda1def23d516e/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.bam_stat.txt 1313/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/87891dfc023c922fb65c0afb7cda52/659_SP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2324/659_SP-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/13d5645a6d892224c842e45f26698d/659_dkd-T1-TRNA-1_B23MHV2LT4_1.fastp.json 15/659_dkd-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/69ebabf9552827adcf62368d04f3ae/659_Dd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 564/659_Dd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/8e22a1e9fd176dbd8f510f2e03ceb4/659_bKP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1495/659_bKP-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/9a2803ecee07ec9844eb9d2e051ed4/659_bGc-T1-TRNA-1_B23MHV2LT4_1.fastp.html 143/659_bGc-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ebd12aafab7d3183fcfe9883660124/659_R1-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1064/659_R1-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/be4934bc7a98d0eb9a8b7a91f9fdae/659_eKx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1362/659_eKx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/5498d27075d95cfafbb4442fa4a41e/659_dm4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1468/659_dm4-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f455acc5bf001725c762937724e49c/659_bMa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1756/659_bMa-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/a2306b1e436a408c5531e659e5ac49/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_contamination_mqc.tsv 1628/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/4f4c9d347595a98c53029fd9eb7169/659_cWx-T1-TRNA-1_B23MHV2LT4_1.fastp.json 63/659_cWx-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/2ec9a35daaec197eb1e38dd3d6a5b1/659_cB6-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 363/659_cB6-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d780f48bc75ad234a9902f92899888/659_Fr-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2108/659_Fr-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/5d77557d28de96920c8c700223cddf/659_djb-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1875/659_djb-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/b2b2a6c5c2eaf138191a909e075d65/659_dts-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2268/659_dts-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/42fc06852d2ba0b299a3767fdc66df/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 664/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/71369cb235da6f8a17b33a769cf6df/659_dES-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1395/659_dES-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/3cfd63f31c9be4e9e286ccfa27fda8/659_R1-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1446/659_R1-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ec51dd774aabddaf747e53e380ac1e/659_cuO-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 212/659_cuO-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d44fec9761bd164bfebf388a1ad046/659_cAd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2149/659_cAd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/cc134ef10a8316246557020b6cdaba/659_epG-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1189/659_epG-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/b95aaccb28e1a8f5b96d4c04fd44ad/659_bTq-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 348/659_bTq-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/f768fc10a6d5448b593830042620dd/659_bMa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2236/659_bMa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/4d5577592eacb3ace9b0ab8c55e9f5/659_dXa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 623/659_dXa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/57357a5ab29d39572412f965494560/659_On-T1-TRNA-2_B23MHV2LT4_1.fastp.json 44/659_On-T1-TRNA-2_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/02d0ec317f6632412a165863e68857/659_Mt-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1139/659_Mt-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/a786c456783b7e7f076fff5cb3ed2e/659_bTq-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1340/659_bTq-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/e2276aeca671ed3728fb599ce4ff4c/659_cWx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 752/659_cWx-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/c81a0b2d3e778609c4459e15102378/659_dkd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1263/659_dkd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/b5c1d1a06ba2141a74fadc8fdc04c4/659_eGK-T1-TRNA-1_B23MHV2LT4_1.fastp.html 170/659_eGK-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/2007c6a0b0716e116be30bfa089ef1/659_epP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1341/659_epP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/0ebe9e572c6b01a83319fa2d25471c/659_cuO-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2026/659_cuO-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/c1012695bf04ebab0ca19ec47fdf46/659_d01-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1482/659_d01-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/7992f938aa883790a326645dd15aa4/659_bMa-T1-TRNA-1_B23MHV2LT4_1.fastp.html 125/659_bMa-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/79095b3080225942a772a72abb01b2/659_cRa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 295/659_cRa-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/bd986099f40c4d2e59c0d73d164f49/659_ezg-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2156/659_ezg-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8cace1e95bbf4491e273b4ed6d3d33/659_dkd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2127/659_dkd-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/82cb3f14d20a557075cb2d4c549813/659_Dl-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1856/659_Dl-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/4d65a84810c6091d8d69da67fbcd0d/659_cB6-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 857/659_cB6-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/06685f1a70efe9db3ba08d6b8c54ec/659_On-T1-TRNA-2_B23MHV2LT4_1.inner_distance_freq.txt 904/659_On-T1-TRNA-2_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d6ada2ee44e4a0ba1472a839c5569b/659_6i-T1-TRNA-1_B23MHV2LT4_1.fastp.html 128/659_6i-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/79d59e57ccbec8f7cbe080034fa12a/659_eKx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2130/659_eKx-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/38e7cc0338461ac0436a7ba09c593e/659_d0V-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1080/659_d0V-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/2bd601ceba33e84c78b3f16a0c467d/659_cRB-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2313/659_cRB-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/d13ea3c9a2910f28c117732b9937d8/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fastp.json 38/659_dRe-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/e29e2eb3dfc317c3649d44138d24a4/659_On-T1-TRNA-2_B23MHV2LT4_1.md.bam.metrics 1868/659_On-T1-TRNA-2_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/dd3b21cf6899b11c30f580f3574650/659_dXa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1292/659_dXa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/053daa51a300413afce0a65260f1ed/659_cwv-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2332/659_cwv-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/13f2ebc642ee1d6997291002f202ed/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1614/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/f70859c7e17a16c54e38ab35f0724a/659_dfA-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1220/659_dfA-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/36d75ae5032805297f49c963078e43/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1502/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/2d6ccde1ef14678627d3c22da62f83/659_rd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1119/659_rd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c57cdc921266e0b0cacba398071e51/659_Dl-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1117/659_Dl-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/f4e3624337ff0a3086ae93922f5c8d/659_d0V-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 589/659_d0V-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/a4e3165f8987d55e0e1c73a3b0dff5/659_Wm-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 201/659_Wm-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/533b4dff0df302a6b5cef1d0fcbdc9/659_wQ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1168/659_wQ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/9f6697b238e633d4ca24db595c9d51/659_dKM-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2152/659_dKM-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/0129c7b558bd026bb7d9130df1f263/659_eGK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2379/659_eGK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/43c3581820b75fcc5a5e6b625d60d9/659_6i-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 799/659_6i-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/041a38d6c3365d775d84dd4614063f/659_cAa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 683/659_cAa-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ae0a615b629acef0ca7e72bc784186/659_epP-T1-TRNA-1_B23MHV2LT4_1.fastp.html 187/659_epP-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/114912d49083de70a7c5474912c71b/659_cB6-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 953/659_cB6-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/92718054684d5a3a71b13bddc61e85/659_Wm-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 678/659_Wm-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/bfcf4b557657bb3f4a17ecfd3f70a6/659_R1-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 774/659_R1-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/c57cdc921266e0b0cacba398071e51/659_Dl-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1118/659_Dl-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/a203b9c84706cb467540f15413e747/659_cB6-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1719/659_cB6-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/fa6d28b8359917969bf1cc37259ea6/659_bUs-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1615/659_bUs-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/757dfffbfcae224d391e64ff30e6c6/659_egp-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1459/659_egp-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/97741c0bd83e8dd06b0233ec62a8af/659_bua-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1308/659_bua-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/b132f20fbc21cdea742e2728093451/659_R1-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1638/659_R1-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/6b5db09ab28e88dd9f758240d33bad/659_djb-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 924/659_djb-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/15f384e95cf70c131e13a6abf092d4/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_rseqc_extra_mqc.tsv 1415/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/bbbf2e8b666a61a1041805bca6c333/659_epG-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1318/659_epG-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/84f4519348a0ce77fc24f185ee45c4/659_bR4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2084/659_bR4-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/0d4e82fb16ce45f460666914ab14bc/659_b6o-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 871/659_b6o-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/4f3c65a12b3da5f029ffae3a3727c0/659_cGW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1368/659_cGW-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/f4e3624337ff0a3086ae93922f5c8d/659_d0V-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 685/659_d0V-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c9354de83519605ec828683fd8f1d4/659_gK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 849/659_gK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1b981f17ea3b395b174c66b18637b5/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1194/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/6b71edfceaf2c076fff15854857133/659_cAa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1072/659_cAa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/96d9e1246d595e4408164277d2b207/659_zO-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 319/659_zO-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/3785fd4bf51907e71ab35e9ec8c663/659_dwi-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1360/659_dwi-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/58e96b669c4fc4837ffba53cdb7023/659_dHy-T1-TRNA-1_B23MHV2LT4_1.fastp.json 69/659_dHy-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/58c3a515be6fb292276903b039d209/659_b6o-T1-TRNA-1_B23MHV2LT4_1.fastp.html 103/659_b6o-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/5ca3da6ca1a7d04e8f464be2554eb9/659_dfA-T1-TRNA-1_B23MHV2LT4_1.fastp.html 185/659_dfA-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/c8010566628ba5bf78bdb0e915e84c/659_Mt-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 539/659_Mt-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/955cdf2c633dd0aa32f084449b16c9/659_bGW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2080/659_bGW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1236cef20750b7564834aa483c92ab/659_djb-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1402/659_djb-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/8cb7a3fc98dba6d2495676875fee91/659_ePR-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1300/659_ePR-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ebdec28249b7d55be30603d23f1153/NTC_0001_0001_B23MHV2LT4_2.junctionSaturation_plot.r 1654/NTC_0001_0001_B23MHV2LT4_2.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/fbed17930d32f9da8795b3b626583b/659_Lx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 515/659_Lx-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/8b8b1ef5e708cab6dbda26fd960cab/659_Dl-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 608/659_Dl-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/3bb2bb7da0caac7efa24c276663163/659_Fr-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 556/659_Fr-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5c3cd36e287d760d4de47cd6bbb2b8/659_d01-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 717/659_d01-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/98a09f58125fc37a932fa2075133f6/659_cVw-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1729/659_cVw-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/6a698e5a942469a61dcf5c069c4e55/659_cRB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 249/659_cRB-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/65e236d8a4b055929d62b19afb2401/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 638/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9b188c04766991cf1da8eaaab4b7c3/659_bUW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1715/659_bUW-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a9fa252aa4ffc753096e1313f7bfc5/659_Kh-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1635/659_Kh-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/22edcef9b971decd2a1c969d13ae5a/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1791/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/eb56e06de4f0fbfff502cde020ad59/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1912/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/56055a826e3b928b184ccb9b9920f4/659_bhK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2113/659_bhK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6275cd59aad633efeff86f3b74d1d2/659_dm4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2141/659_dm4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e01089a8ef0e47f4162ea255afea5f/659_e0S-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 497/659_e0S-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/7f0b31ef8391f6fff9bf37ef7b216b/659_8h-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1348/659_8h-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/41b79ab7d0feee7ed12d50a57354d2/659_bTo-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2018/659_bTo-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/1ac958d7244fee1b9d99eb724ed0a7/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_contamination_mqc.tsv 1619/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/ae6417ede9f41c410dcaf4f7158ab0/659_cIX-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2171/659_cIX-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__3b7a596a--20260604-122713/pipeline_info/nf_core_pipeline_software_mqc_versions.yml 2384/nf_core_pipeline_software_mqc_versions.yml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/3d97d6b9fcf37f1330e0b97402e605/659_bCu-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1762/659_bCu-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/84c5328fda55f5fca99ce1e63814dc/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2287/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/81b273eaeb18fc33dc798d1c7ef1e5/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1333/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/51e6b28a86cf62017087f41d462118/659_dwi-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 880/659_dwi-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/abe4047a1f07b02ba8bffe913a1492/NTC_0001_0001_B23MHV2LT4_1_trimmed_2_fastqc.zip 232/NTC_0001_0001_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7511df02c683105190505d6773f89b/659_cYf-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1000/659_cYf-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/6023fb9175c2d734c6bb3be7adcf62/659_Kh-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 771/659_Kh-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/e5245e2e85bfc3306e97eac9a32583/659_Fr-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1608/659_Fr-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/63bceeb0f108efe84d7560294e2538/659_rd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1281/659_rd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/887f3971390ba53413381021f44083/659_bGc-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 900/659_bGc-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/10384430139936c4180b6f233529d3/659_cWx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1901/659_cWx-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/a6e6dba52d82d3380a3015d5f5184d/659_dQk-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1742/659_dQk-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/9faa440b2993e4aabac5b8755a1597/659_buD-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1183/659_buD-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/e1b2b2b5d0a8ed17790655d734b45c/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1815/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/f0b907570b1af68f63f20124cd1101/659_Wm-T1-TRNA-1_B23MHV2LT4_1.fastp.html 102/659_Wm-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/8e80fab7403a65e57ee517bec41bf6/659_gK-T1-TRNA-1_B23MHV2LT4_1.fastp.json 79/659_gK-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/6223e5391a097cbd5c6eba4957a2c7/659_epZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1431/659_epZ-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/c83bc79a9993c6d752789ce8cc8423/659_dwi-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 784/659_dwi-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/56eca9c3a49282afb6493d55bba715/659_epZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1229/659_epZ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/dfcc0891789e6daecd42feabcfa8fc/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.inner_distance_freq.txt 959/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/f1a140e26752d178425115b4293a36/659_bR4-T1-TRNA-1_B23MHV2LT4_1.fastp.json 52/659_bR4-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/1d2835edd074fc4f87ae890698508b/659_cVw-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 371/659_cVw-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/81d275d79985511300f4b7b024543a/659_Mt-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 840/659_Mt-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/041a38d6c3365d775d84dd4614063f/659_cAa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 587/659_cAa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f7511ae47ba5a01633a89a9df01e2a/659_dc8-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1504/659_dc8-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/bf46f79d73744f7811702362a6a51a/659_c95-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2097/659_c95-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/037f0500aace292bbfa6a22235c9c2/NTC_0001_0001_B23MHV2LT4_1.pos.DupRate.xls 1749/NTC_0001_0001_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/dac5ac6b3d1b7e107b006139e9233b/659_bTq-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1534/659_bTq-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/df63567253a5636596a4f524269891/659_epP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 377/659_epP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/b09027ecb5ecd30a0c905dcea827c6/659_dRe-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1383/659_dRe-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/56d601607acbc8eb6ea85c177d4fc9/659_bR4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1584/659_bR4-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/56367222c392f124c5cd0da019cf88/659_egp-T1-TRNA-1_B23MHV2LT4_1.log 404/659_egp-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/a45c306c0cdd81b691bb28f668e238/659_dfA-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1895/659_dfA-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/805ab04c2f566754ae6411744eb2d4/659_bR4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 276/659_bR4-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/71cacd80cbdcbf5909f1448f26eff0/659_cRa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 947/659_cRa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/b89f40917b82a743affa5600ba722a/659_end-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 641/659_end-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/e7a10da1bd4204fe9e6c1db42c34c0/659_SP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 920/659_SP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/0538dc65f5ee61d63b9cb82ff10f21/659_end-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 832/659_end-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/40017f562c364c231d4b4714b754bd/659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1861/659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/00b80a47d8dc54b75fbe1b4e8e7d05/659_cYf-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2183/659_cYf-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8a012b63923054d002aef3b70137b1/659_dQk-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 217/659_dQk-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/aae230debf1c5a6c87d189d83ca876/659_djb-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1148/659_djb-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/9364dbd04e63cde1aca2cbb1f5f1ac/659_bUW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2297/659_bUW-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/c41e3367f465ddecfd1ecb8a528463/659_SP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2159/659_SP-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/097d6451c3b37c11c104ef3b543e80/659_dm4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2237/659_dm4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/75389e3c96f4c2e60cb4ba56df9586/659_e0S-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 224/659_e0S-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a06cac084cdacb6534e3461a09ac96/659_cfy-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2181/659_cfy-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/b3d9c248bc1071dbf9584e23884d95/659_bGc-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1380/659_bGc-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/00b80a47d8dc54b75fbe1b4e8e7d05/659_cYf-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2087/659_cYf-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/d1a21afc442fb262fc15433c9cada7/659_cRB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1113/659_cRB-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/4b208051b70c3d9d3809acd4725174/659_dkd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1938/659_dkd-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/3d5794578dfe47954483b63b8e04e3/659_eu1-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2233/659_eu1-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/30abc65e36c27d1605f1efdc9f9dcc/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2291/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/0ffc0d11a711c2d7e13a1cf7d8ef34/659_dts-T1-TRNA-1_B23MHV2LT4_1.log 438/659_dts-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/4e0cee82a0364914bbc9a14f586d5c/659_d0V-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2125/659_d0V-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/99eed794978fd19e962cde877b5dd9/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2050/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/6587907217c80ffe44cce63cba2d43/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1626/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/db887bb6d2c192177a7c89daafccc2/659_eu1-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1945/659_eu1-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/2d9610de0e1a55b6f2399fb7e52f60/659_end-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1605/659_end-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/c6ce16004bc44ac639d169aafbc293/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 709/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/8dbb0d2d35f2cde512761bdb533422/659_buj-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 206/659_buj-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/4b9487822f9e22d840fe14d7ae7518/659_R1-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 485/659_R1-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/1f98b48bfcb0032e50abc8bda4eaef/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2006/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/e12792ca45b408923c674e6a38b58d/659_c95-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2000/659_c95-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/8af3335d62e03b7fbedc63783ddc5b/659_d0V-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1645/659_d0V-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/74f958517c09b7f7eba16311ca18af/659_e0S-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 593/659_e0S-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/e2276aeca671ed3728fb599ce4ff4c/659_cWx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 656/659_cWx-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/aea0a17a68d9881b23540ac854278a/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.bam_stat.txt 1339/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/b24ba7bb32af6d87fcb0b0e6f3fe4b/659_cIX-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1498/659_cIX-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/4619d9ba4490d19079dfc9ebacd0d9/659_bKP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1301/659_bKP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d2fd769a925fc6192429b1f142d48b/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 346/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/c9d497c7f46607c566e5e578863717/659_bMa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1373/659_bMa-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/fdacda98178c9a318d867c74ad3ced/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1126/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/68aae3f355ef82eba1c74a35942c6d/659_c95-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 294/659_c95-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/24764503b450fcfe37bac4876b5026/659_eKx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1746/659_eKx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/34e3c5fdd1f41e8e6026107fa67b2a/659_cq5-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1073/659_cq5-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/8606322ec5f7f17ca1254e9e17ca39/659_Dd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 756/659_Dd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/cb0a281bf4ded5f7a2d9fb1a6f6bc7/659_dES-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2284/659_dES-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ea54c0da2b8c8a43a27871358e40d1/659_cYf-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 298/659_cYf-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/87b6ab8518c815be0cb0a697e5d70d/659_bNS-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1007/659_bNS-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/c7d77cc7d92a53568719bbad61eb3a/659_cAd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1037/659_cAd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/e7567b45f0999d323de0e156893a12/659_dES-T1-TRNA-1_B23MHV2LT4_1.log 454/659_dES-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/5efb39995277466198a91062eb61dc/659_ecd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1211/659_ecd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/785d2aef3a66527514d66fbc5edef7/659_bua-T1-TRNA-1_B23MHV2LT4_1.fastp.html 153/659_bua-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/70e5ee565cee34f67e04097a8608e1/659_epP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2103/659_epP-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/29d063cd7dbe718751c57be8f99995/659_bTo-T1-TRNA-1_B23MHV2LT4_1.fastp.json 53/659_bTo-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/7a5876320f1dd840e07945f2a1989a/659_SP-T1-TRNA-1_B23MHV2LT4_1.log 421/659_SP-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/043b1b9c58b0ff3ddab8bf111b3ab0/659_dkd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1551/659_dkd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/abecf52c329bf3cbcdfb0b677bde3c/659_b6o-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2119/659_b6o-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/62e92020210986a06ef1fb02c9f719/659_Fr-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1701/659_Fr-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/5ddc0f1d0a0c5528cc8d453008599a/659_b4x-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1943/659_b4x-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/5778917c504fa6993a9cd8693bc26d/659_bTo-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 921/659_bTo-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/bd8798fa0b8fd2dc6ff0bfef229a63/659_epP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 864/659_epP-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c8314827bf8691dcf9fbbe5dda1fec/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.fastp.json 94/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/82da7e59f6dd4b4f1150976213cbc8/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1535/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/ddd556668fe0905588b498f6e09116/659_end-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 337/659_end-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/79af35f0ebb5a85e4a589603a4b879/659_dwi-T1-TRNA-1_B23MHV2LT4_1.log 400/659_dwi-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/b3863755fbb5dc0b4721c2ecaf84e6/659_Kh-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1347/659_Kh-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/a8f582b9bf00a9a304cae238c90c8c/659_egp-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1842/659_egp-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/f5e02fae919feeee809b3c66efef29/659_eGK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1919/659_eGK-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/0e5379b24a08459b0ea8b5a7016270/659_dc8-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1699/659_dc8-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/a8b265c21bc6f8e6c99c66bbb6d385/659_bIB-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2362/659_bIB-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/35e91896baba06dae12f2fbb02fbfa/659_dc8-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 373/659_dc8-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/6e7d6d4b16c943ff9496465cd656a1/659_eeB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1364/659_eeB-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/13c34e39eab3e35b233428401c1949/659_bNS-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2270/659_bNS-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/1b32013638a684ec098b2b3af6f2a6/659_ri-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1658/659_ri-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/facc6a26238b28580f32c8fc5c7239/659_bTo-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2327/659_bTo-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/e5f46b2f958102c5d1f84bdcd6d51e/659_bMa-T1-TRNA-1_B23MHV2LT4_1.log 412/659_bMa-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/d414c33430f3192c46b2abe6823e9b/659_bUW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 854/659_bUW-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/dc7964ec7f8733893297788de39b9a/659_dcz-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 699/659_dcz-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/b994e22f6405085a97ea0937191a82/659_dts-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2172/659_dts-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/a1507ce064e6545c22543888cbe004/659_dES-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 303/659_dES-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/902d4b550053e04b50f9550d6bcb8f/659_dfA-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1802/659_dfA-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/2eca4665e93305d2640a902d299280/659_eHw-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1913/659_eHw-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8e9c3b82183a03d8bd8124bc809879/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.ReadsPerGene.out.tab 767/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/db02403d556264c34d57ec0621e325/659_cYf-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1196/659_cYf-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/704df5695f161bb0054fde698dfc62/659_dKM-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2248/659_dKM-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/46a791ddfa811ce4947f367b6e37c7/659_bR4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1672/659_bR4-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/c0185d7efa3a8ccdbbebffeadc936f/659_Kh-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2115/659_Kh-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/29829bd7d4ddff090c850246d86300/659_eKx-T1-TRNA-1_B23MHV2LT4_1.fastp.json 18/659_eKx-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/d36717b91d6fc8c93021208ef8db91/659_bua-T1-TRNA-1_B23MHV2LT4_1.log 436/659_bua-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/cef30cafe86caa5c61b8efcb1ffce8/659_bTo-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 825/659_bTo-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/b850def59da4bbbae06c22138e8787/659_bMa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2140/659_bMa-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/e038cf89ffa521e0a95ee02cc45bab/659_epG-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 554/659_epG-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/530728d1c70f19083795ba2727b652/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_preseq_mqc.tsv 2288/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/107ed726e6e214ce098e8f1ba2d599/659_dHy-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 949/659_dHy-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/a6b4b8a19514cf166ec9c2e6867469/659_buj-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2216/659_buj-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/9f044405d9b3f1a50111f819ad7162/659_dQk-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 782/659_dQk-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/620a769597fb536b86ae7070b3d65e/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.fastp.json 66/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/fc5f0c0a3c0ff1b3f44e8b8bbe2cf6/659_1q-T1-TRNA-1_B23MHV2LT4_1.fastp.json 41/659_1q-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/52b55aa6929fb0e087c1bddc46724c/659_Dd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2382/659_Dd-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/27a378efd1b205ec32562a2473c0a0/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_seqtool_mqc.tsv 1990/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/7d3cd5e96ef73239623976444406ef/659_end-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1187/659_end-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/2f848cb38ad2d2b014a93e08abde2f/659_bCu-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1667/659_bCu-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/c431ad5ad78a8f4eac6dcfd690bd94/659_gK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1421/659_gK-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b2f8811266770ed73805b6cceb677d/659_zO-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 652/659_zO-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/a722f013aef33705c260ecdaf510e7/659_eHw-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1243/659_eHw-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/dceaca680627bdc584391dca1c2f6c/659_d01-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1424/659_d01-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/80c3b73dad7581db61eb3ee319bbca/659_cRB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1854/659_cRB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/d318a90fc340528a0b0f4e9624bd46/659_dts-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 820/659_dts-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/c5ad3d098b0cdc3902ab8e97c30b7c/659_mK-T1-TRNA-2_B23MHV2LT4_1.fastp.json 40/659_mK-T1-TRNA-2_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/d4e4177185ef2ed8b7ce363bbb52cc/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2099/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/5556d299b0979eab5ccc39d4044bdd/659_dHy-T1-TRNA-1_B23MHV2LT4_1.log 427/659_dHy-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/5029cf6d508e39cc11e8f3dfb30869/659_buD-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 544/659_buD-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/d1515b1377d1b685c10431644679b4/659_dc8-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2347/659_dc8-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/54cdc38908592af939e95b8ae00399/659_bKP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 283/659_bKP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a089650397753a549c5e98a3cc9422/659_bhK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 330/659_bhK-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/ff92cf2e4d58f469f0f15f82aae6b0/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.md.bam.metrics 1918/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/888387551b8f90da01b58d10d3b817/659_cTi-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1677/659_cTi-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/a0de23e2a14f965148e987d6a4e794/659_8h-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1252/659_8h-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/bfe6c5e0381d9161ac8d84cf162d0b/659_cGW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 984/659_cGW-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4c0a14033590134598dfb07ab67e08/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1911/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/dfaa01c6cccee1107c5f1347f8950c/659_cIX-T1-TRNA-1_B23MHV2LT4_1.fastp.json 60/659_cIX-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/bfd4acbc5d637202b2df98e304fd9b/659_cq5-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1545/659_cq5-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/f3b303a9edf9722ae05012f7ed9b0d/659_bhK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1307/659_bhK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/af78fe272e7887d58485c7abd36dd3/659_cq5-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1641/659_cq5-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/160f5e5419a85ed04f7086193c0af0/659_wQ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 527/659_wQ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/58d73755b2e92a8c3dad21510aacd1/659_6i-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1951/659_6i-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/35791a7c548f1a808891fd855593fc/659_Lx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1763/659_Lx-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3dcf560768fc8f8ec0de2809c1ecf1/659_eHw-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1819/659_eHw-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/20856d58df5e7bcfdfb0d7e5279c31/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 529/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/bbfe7d0d1b2212d42536c2569ec5a9/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1528/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/d2474f3f21b4479cfa6c3ece208c27/659_SP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 727/659_SP-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/fbb1cec44b97777379bc5619a9552f/659_dQk-T1-TRNA-1_B23MHV2LT4_1.fastp.json 14/659_dQk-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/b5c1d1a06ba2141a74fadc8fdc04c4/659_eGK-T1-TRNA-1_B23MHV2LT4_1.fastp.json 74/659_eGK-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c8314827bf8691dcf9fbbe5dda1fec/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.fastp.html 190/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/eb22a428172bdd8a185ad1e5fe9789/659_6i-T1-TRNA-1_B23MHV2LT4_1.log 416/659_6i-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/433d623deaf3330c654c97f109e24e/659_b6o-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1639/659_b6o-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/b028ad02fe36887d4cae63637b4bc8/659_ezg-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1603/659_ezg-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/e61c768f9295a42bb9c2b883557967/659_gK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 567/659_gK-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/161bbcd56d427b905d7fb516141ec6/659_mK-T1-TRNA-2_B23MHV2LT4_1.pos.DupRate.xls 1766/659_mK-T1-TRNA-2_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/025e143e8a1615c2aadc2b9ffe29d9/659_buj-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1448/659_buj-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/9da6a5b52dd2e560dc0eb1aed89e33/659_dcz-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1467/659_dcz-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/f0b907570b1af68f63f20124cd1101/659_Wm-T1-TRNA-1_B23MHV2LT4_1.fastp.json 6/659_Wm-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/992f28d24d058d95bbde7690977229/659_epZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1617/659_epZ-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7800346e9273fdef96f3181ea33384/659_cWx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1709/659_cWx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/c3320290f1317d4f83839278b7aa90/659_dwi-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2224/659_dwi-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ec51dd774aabddaf747e53e380ac1e/659_cuO-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 211/659_cuO-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/d55d70a336ea83c6fcd40a23a706d6/659_6i-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1567/659_6i-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/32db5120d9d6a2ed3ca07c8bf7b453/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 559/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/d85e828c6b89c39716972d86cc97e8/659_dcz-T1-TRNA-1_B23MHV2LT4_1.log 410/659_dcz-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/3f2d20b9a2cc3ea164dd50e775e977/NTC_0001_0001_B23MHV2LT4_2.fastp.json 22/NTC_0001_0001_B23MHV2LT4_2.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/abce0da0386aa01ae93421501b2961/659_zO-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2157/659_zO-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/c6dfb716b6d5b942e109d90f3f4a49/659_dcz-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2235/659_dcz-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/25abc54bf14ea8f7fa9ad4ea94b9b4/659_dm4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1949/659_dm4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/6af55d652a03f10a6293eb12116091/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1286/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/65e075e55a75d65ca206af6e1bfc29/659_dcz-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1851/659_dcz-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/9ce2f4c337423a669ea4c83f9b537f/659_cAd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1771/659_cAd-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/e9f3145fc6d43548446e03eee806d6/659_cwv-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1592/659_cwv-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/b170c608e877570fb0997c93e41f08/659_mK-T1-TRNA-2_B23MHV2LT4_1.attempt1.command.log 2158/659_mK-T1-TRNA-2_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d2c64481f0775240e92caf8e8000cf/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2182/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/61de4d2f2a655e954abc1ab6769048/659_bIB-T1-TRNA-1_B23MHV2LT4_1.log 444/659_bIB-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/942280bbe7bbd2120789c724cbc372/659_eGK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1536/659_eGK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/f669963724f6ad8fe566366d04e6c9/659_epZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 763/659_epZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/247137cab32aeeb24b1f3dd8e6795b/659_b4x-T1-TRNA-1_B23MHV2LT4_1.fastp.json 23/659_b4x-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/6d8c44df9a9581dac809a12c7029de/659_Fr-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 934/659_Fr-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/aed4ee58890c7fd4003bdec4a3b499/659_buj-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1736/659_buj-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/2b967d327526cd874424ddafac86d2/659_On-T1-TRNA-2_B23MHV2LT4_1.attempt2.command.log 2203/659_On-T1-TRNA-2_B23MHV2LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/913bf345a2d2dfe6e554aea4132762/659_djb-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 551/659_djb-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/5c3442a0438881834418a11a445f8b/659_SP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1879/659_SP-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/8d810a22cce823839f75a9daa9e494/659_ePR-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1490/659_ePR-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/f60f188b614c2408e66c7dbb79c80b/659_epZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1728/659_epZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/c906030a53a0e200eff790aba38b32/659_dkd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 687/659_dkd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/5ba9669c2281dc602551da1e4908a7/659_Fr-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1410/659_Fr-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/8e44c33df0785b1de23f6a89a7e43b/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 640/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/1cbdea44b83bc4902af6fff47a1a3e/659_cAd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 714/659_cAd-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/99eed794978fd19e962cde877b5dd9/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2146/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/f32d40167b709127e85ed1ae7d3e7a/659_dwi-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1839/659_dwi-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/b8d6652335c631828be05da2598cdd/659_d0V-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1549/659_d0V-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/27bce879ac262e0e4c69bf3a3c76c3/659_eGK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1727/659_eGK-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/72b7ac4c1b34fa201b1360e88a30e6/659_cVw-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1330/659_cVw-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/48a0fe4ec268d1757d43ad66529aa4/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2170/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/d670c4c9fd4816dee0af4b728c311e/659_d0V-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 877/659_d0V-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/bc4612ef46c62db2b6c0f693bf381c/659_dwi-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2128/659_dwi-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/e875e32879571e514f5924ff92627c/659_Mt-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1028/659_Mt-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/5e6db1165b7fd12c35ab76c4569de3/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 633/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/ade70bb79a24d0a75b56dfd2390177/659_cGW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 888/659_cGW-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e6b234cceacad7191ee1a8f28ed452/659_cAd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1483/659_cAd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/e9fe7e39050cd5bae3ed6bd3e9506b/659_ePR-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2250/659_ePR-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/09c72cc363e23650ca4773fd34c17a/659_cB6-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1332/659_cB6-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1f237b3e311cf42a4a1a97f178231c/659_b6o-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 203/659_b6o-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/ba458ec48816888c2562917a0ff747/659_bIB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2083/659_bIB-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/f0f5545da1125e71bdb8072515e43e/659_eu1-T1-TRNA-1_B23MHV2LT4_1.fastp.json 25/659_eu1-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2662ddd4f78b0afdb93868a960a958/659_buj-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1831/659_buj-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/674c43034f679a0e31d41da9cc57d1/659_e0S-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 977/659_e0S-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/19c2216f170cbfaad6555427742c69/659_gK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1823/659_gK-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/0025a85de05832666a4817e9168367/659_cYf-T1-TRNA-1_B23MHV2LT4_1.log 450/659_cYf-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/610a6df43506095d3cd7ca1d2c2884/659_ri-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 507/659_ri-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/7e973897bb0f77ff8db5e334a4c626/659_eKx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1650/659_eKx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/404bc7c82bb81bd15a0e234a168565/659_dKM-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1680/659_dKM-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/6d77d66df59f63487933b23744bfc7/659_epG-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1030/659_epG-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/724617ffc77b709c9cbdab93598746/659_bUW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2201/659_bUW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d7236687f90662ad738c9810b29e37/659_cYf-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2339/659_cYf-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/374056476ef3849f9f17abc0603802/659_R1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 581/659_R1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/9a2803ecee07ec9844eb9d2e051ed4/659_bGc-T1-TRNA-1_B23MHV2LT4_1.fastp.json 47/659_bGc-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/4aa2e816608a20e5cc1031a0490750/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.lc_extrap.txt 2100/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/b44efc5e0ea16ff2d48c6890203eb6/659_gK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1517/659_gK-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/ddb6d9062410b103d450f8c8d9f8ac/659_rd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2048/659_rd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/a1d43570f4bf89218d15d42ad21725/659_dkd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 783/659_dkd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5061cade691d6e86810d47dee05f98/659_ezg-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 563/659_ezg-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b673621b118928a929a5f4c8fb8d2e/659_gK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1036/659_gK-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/9faa440b2993e4aabac5b8755a1597/659_buD-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1184/659_buD-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/c0e8462ea27575f9606efee2688e4c/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1160/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/a4da64670061a32b2edcd1735adc9b/659_zO-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 844/659_zO-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c75dbf757d4af3f6d9c82db78fe5bd/659_eHw-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2001/659_eHw-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/d743fdf361fe83eb0643b88bf79439/659_bIB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1623/659_bIB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/769d7dcd8ad2543749a9c7c02fa974/659_Dd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1906/659_Dd-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/de0e7a75d5e70d8f9a666c05312768/659_eeB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1092/659_eeB-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/6b366e65244e6a67865b535b151170/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2352/659_bQZ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/010f9bce2a3e486ff0291624160a5c/NTC_0001_0001_B23MHV2LT4_1_kallisto_mqc.tsv 501/NTC_0001_0001_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/d7bdf59248383e66f9e93feaab0bdb/659_cwv-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1980/659_cwv-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/8548f9d361edc2cd45d3eaeecf8872/659_rd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1570/659_rd-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/e7b0972feef958765774466bbcbd28/659_mK-T1-TRNA-2_B23MHV2LT4_1.log 420/659_mK-T1-TRNA-2_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/c78ac1f690819fa004c73d96a70439/659_cq5-T1-TRNA-1_B23MHV2LT4_1.log 394/659_cq5-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/0ea9d110493d633c6a5f95cc6cc612/659_dm4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 989/659_dm4-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/29829bd7d4ddff090c850246d86300/659_eKx-T1-TRNA-1_B23MHV2LT4_1.fastp.html 114/659_eKx-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/5a9cfd5bcebcbe1ecfc43c2f0a60c8/659_Lx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1665/659_Lx-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/5c17b6910fc199c360aa55daf97306/659_Dl-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1952/659_Dl-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/1de5313dd3185af516614de411501f/659_d0M-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1078/659_d0M-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/a5c4c1846815307bb787cca8c5aa9b/659_gK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1325/659_gK-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/fc92eb9799ab37775b1f8b9ed1ded4/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1317/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/61167efa2596f999cd9be35c3a4ed1/659_b4x-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1463/659_b4x-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/dcadb5dd88dc19bf92c69313c4f870/659_bCu-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2098/659_bCu-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/89161e14dbc8b13dd3432af165d96d/659_eKx-T1-TRNA-1_B23MHV2LT4_1.log 402/659_eKx-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/1ac0ecb91b8b96bbf58dd039c0d2b6/659_dts-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1489/659_dts-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/b2f4dc5be5a5c34d04aa6f76342be5/659_cAd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 518/659_cAd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8/.command.sh .command.sh")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/734564fda41ea8ae735ba28dfa65d3/659_ecd-T1-TRNA-1_B23MHV2LT4_1.fastp.json 90/659_ecd-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/dddd561835806d3df9e2f6ce808078/659_cWx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1418/659_cWx-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/1010a92c458e578801ef2cfb3d754e/659_cVw-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2175/659_cVw-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/a92f86ea04c1a50a81d4f9d0152a1e/659_dfA-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 932/659_dfA-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/d2b25cbc5d1560c2cb5f57117c325c/659_bUW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1811/659_bUW-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/ca03e23c2566d2e3358ab348c5a20b/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_seqtool_mqc.tsv 1986/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/9083a9516d5de78446d5d7fddf9ba4/659_zO-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1798/659_zO-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/785d2aef3a66527514d66fbc5edef7/659_bua-T1-TRNA-1_B23MHV2LT4_1.fastp.json 57/659_bua-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/bccdef83f53010d49ec29258e914a6/659_cAd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 810/659_cAd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/c289a790408440ed64ecff6015fbde/659_cAa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 779/659_cAa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/5c2fa02a760e74ba27e571b196b60e/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1624/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3d0d8d47d9d80806c10e04858a9fb1/659_wQ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1726/659_wQ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/5ac872c1f75eea5d5e9c596a03a523/659_cYf-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 546/659_cYf-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/66e4b7c9f6308a676a51b02535fffc/659_Kh-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1062/659_Kh-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/b2dad4d6b4e54996821b3b3539aedf/659_dts-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1782/659_dts-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0dab659f8beae8c2ca845771fa1dd0/659_end-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1405/659_end-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/35aba4a192c3062de13495cf634510/659_eu1-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 985/659_eu1-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/13749158ed9cefd774f25f8bc1c868/659_Dd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2109/659_Dd-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/d102bbb74f68b71383f10aafc9a5ae/659_ri-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2310/659_ri-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/f80d63546e0851ba940897eecfae42/659_cAa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1451/659_cAa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/1ca76ac118fccbeb11823ea2f86501/659_Lx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1955/659_Lx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/4f87b59e09841c76a7435e87e04034/659_dm4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 247/659_dm4-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/12c05ccdfbecb5826a519770c5bb0d/659_Wm-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 869/659_Wm-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/35d5bb7ca7f7ea37d8b43530c16b12/659_bGc-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1177/659_bGc-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/d254f3b61aa5406dab68e9add3fbc5/659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1869/659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/148f611a7a517a90d4d5f57f49e117/659_epZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 188/659_epZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/785129f928bbba76803409e87047fa/659_dkd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1083/659_dkd-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/d74b8392c7fe8e19691b31979e21c3/659_bhK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1998/659_bhK-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/77cdc7a7b54b227c0b5d7214f463e3/659_cq5-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1924/659_cq5-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/de1b64364a142b80db9e39bbfab0e4/659_cYf-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1288/659_cYf-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/7947fc1f5d159eff01f5d7e74e7341/659_Wm-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2118/659_Wm-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/3343fd7f527311b7b7119adda073f1/659_6i-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1115/659_6i-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/547c321cda3185e4117a691d735307/659_mK-T1-TRNA-2_B23MHV2LT4_1_seqtool_mqc.tsv 1956/659_mK-T1-TRNA-2_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/46400a3e81739b9b470ee85880bb62/NTC_0001_0001_B23MHV2LT4_1_seqtool_mqc.tsv 1937/NTC_0001_0001_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/c6ce16004bc44ac639d169aafbc293/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 613/659_ciZ-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/50353c84a18e679339c4d09c2bc744/659_eKx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1089/659_eKx-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/3124f582ed7642921aae3ba4809578/659_ePR-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1396/659_ePR-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/42fc06852d2ba0b299a3767fdc66df/659_bIB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 760/659_bIB-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/00289407f50e5394b20396573ac380/659_egp-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1267/659_egp-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/abe4047a1f07b02ba8bffe913a1492/NTC_0001_0001_B23MHV2LT4_1_trimmed_1_fastqc.zip 231/NTC_0001_0001_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/353564d9e56d3b29d463a88e648073/659_dcz-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1108/659_dcz-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/acac48a28890fbbbac914665897a81/659_bNS-T1-TRNA-1_B23MHV2LT4_1.fastp.json 50/659_bNS-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/18d1f1f5999eff0c57c7e66f29605a/659_On-T1-TRNA-2_B23MHV2LT4_1.junction_annotation.log 1001/659_On-T1-TRNA-2_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/4296c9713348df2651b79df8a1d05e/659_dfA-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2294/659_dfA-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/c064243c83ad24ecf70f72e7fdf0f4/659_bCu-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 995/659_bCu-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/4d4c5019fb0fe5619ae86faa6e94b3/659_bUW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 569/659_bUW-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/e7e248d5cc8a7fbddd74f693e0b680/659_cq5-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 873/659_cq5-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/ba458ec48816888c2562917a0ff747/659_bIB-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2179/659_bIB-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/ef8eb9c53afd3830a2f1094186737e/659_cIX-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1597/659_cIX-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/5d72d033af74e0f5b6487c4b799b8a/NTC_0001_0001_B23MHV2LT4_2.bam_stat.txt 1270/NTC_0001_0001_B23MHV2LT4_2.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/40eb19710884441fdc1942492e18ac/659_bMa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1277/659_bMa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/4c6b847f10b449472a8dc629e88231/659_dKM-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 622/659_dKM-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/609cb8105c7a30c9798bd351fe05ec/659_d0M-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1835/659_d0M-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/929bdba48b878be9f86f94fcc68b7b/659_ePR-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 526/659_ePR-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/69233aa9ac3b83301ce359e3b1fe0c/659_egp-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1094/659_egp-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/6f4800e96a7b964f4c1ef151aead1f/659_djb-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 309/659_djb-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b2f8811266770ed73805b6cceb677d/659_zO-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 748/659_zO-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/9342c46d01bc10340606d0d65791eb/659_cfy-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1486/659_cfy-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/770d99c78899aeaff82004b864c7d2/659_cWx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2264/659_cWx-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/3f690d861f89493311a988d27b8cc7/659_SP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1181/659_SP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/aa20c5a8c20088de0a599a60a7d4a3/659_b6o-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1068/659_b6o-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/5d747109fa2c13b2b6169779fae5a2/659_gK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2355/659_gK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/29ce6341c1c8a33b941101c7ea8ec5/659_bhK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2305/659_bhK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/13fc01cab8c8ee3e651986ba2b55ad/659_bUW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1621/659_bUW-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/1b41fe4ea5d75af0bbc2c0a3881bff/659_dES-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2092/659_dES-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/fc5b3024777011b47f6147b7a8afc6/659_eu1-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2312/659_eu1-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/c38a94b39360cd0971ce286cf90c5e/659_Kh-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1539/659_Kh-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/ae1f58e63c333ab709c127f39ecf09/659_d0M-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 492/659_d0M-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/3faddf5a418ef8b449078af162693e/659_Wm-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1829/659_Wm-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/fb1725bf0b150e0736ce79325a9a35/659_R1-T1-TRNA-1_B23MHV2LT4_1.log 389/659_R1-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/5edba8a6feeac5f9fdfdde7c749651/659_bTq-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1232/659_bTq-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/650e727c634fc010112d82a7e47005/659_dm4-T1-TRNA-1_B23MHV2LT4_1.fastp.json 31/659_dm4-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/fe551878c91538d7946d2502e6cdf1/659_1q-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 715/659_1q-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/114d8b5fd38f54b32f3e6fd818d431/659_end-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1020/659_end-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5dff9fafd0292771f6988a8ef20699/659_bTq-T1-TRNA-1_B23MHV2LT4_1.log 472/659_bTq-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/2fc02bc6af9909f45dd6cd64cf8c1a/659_ezg-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1892/659_ezg-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/34a9113e02c086aa46faf534b15cba/NTC_0001_0001_B23MHV2LT4_2.infer_experiment.txt 790/NTC_0001_0001_B23MHV2LT4_2.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/33f6548a3c1b7cb71e8d890ce42629/659_epG-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 842/659_epG-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e6ad894af1842e3bd756097046db26/659_Lx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1282/659_Lx-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/3608d8990a30a5a8e1e6ce41075178/659_dHy-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2273/659_dHy-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/f8ecb9039cf7642815fb755f3a8a2d/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.fastp.json 98/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/66fb721279b748e18798884d20119d/659_b6o-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2215/659_b6o-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/5dbe6962cb235b1b6365093172472f/NTC_0001_0001_B23MHV2LT4_2_trimmed_1_fastqc.zip 233/NTC_0001_0001_B23MHV2LT4_2_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/f162cea9e99feedb9b078242a1f020/659_gK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2285/659_gK-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/1b41fe4ea5d75af0bbc2c0a3881bff/659_dES-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2188/659_dES-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/5ab6543aa3ddab7963e3445695b015/659_dHy-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1163/659_dHy-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/41035f35cb3d63e3b54fd279b75d7c/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2011/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/21f3c91af6c4c345828b612f2e20fe/659_cB6-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2354/659_cB6-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/5b754931d74af53caf11cab5fb68c8/659_ecd-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log 2206/659_ecd-T1-TRNA-1_B23MHV2LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/417b2b46b28f2e214a6b8525458997/659_dc8-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1792/659_dc8-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/adb4ece70e538f61974cac3d4c727d/659_bKP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1689/659_bKP-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/7f9c1b5a3f95c95f920731f1562d8b/659_mK-T1-TRNA-2_B23MHV2LT4_1_trimmed_1_fastqc.zip 267/659_mK-T1-TRNA-2_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/804a8a4288d8c8f75cb2d6f600bb34/659_dHy-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2081/659_dHy-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/6634dbd705cadf9d16d88122506ce4/659_djb-T1-TRNA-1_B23MHV2LT4_1.fastp.json 72/659_djb-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/72941e53c685043c25f2a76d7ca7a1/659_cTi-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2082/659_cTi-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2c6d2f6ec604a5ab1793c3658b88d6/659_cYf-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 807/659_cYf-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/2c30adde3a131710a6328378e34025/659_cVw-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2271/659_cVw-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/2705f76d92a317b095ac4c22b54025/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2090/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/dfb05f37149945ca87cde556b96b35/659_zO-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2369/659_zO-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ceafd67985fc19c449ea308d6ee9d4/659_d01-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1870/659_d01-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/211e402813dbfad1f6329ac525fa3d/659_dkd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 220/659_dkd-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8d665e7b1ff2a58ebf40895cfd1bc2/659_buj-T1-TRNA-1_B23MHV2LT4_1.log 392/659_buj-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6992cb5dafe201e1ef31c3060e5868/659_bhK-T1-TRNA-1_B23MHV2LT4_1.log 425/659_bhK-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/4d0db701553d993015582a3efc3f5c/659_bTq-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 930/659_bTq-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/932a285bcc3a3f3257bbdf0d6823c9/659_bhK-T1-TRNA-1_B23MHV2LT4_1.fastp.html 150/659_bhK-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ad987b92c7e219361faf0447c924ef/659_Wm-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1066/659_Wm-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/155e97468864d49819ba48625ab53e/659_bua-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1690/659_bua-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/38e7cc0338461ac0436a7ba09c593e/659_d0V-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1079/659_d0V-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/d1bfe958e9e1710562bd1b8bd5b17f/659_wQ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1821/659_wQ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/52018d195582cd4d8b72cb03bb2c7c/659_8h-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 964/659_8h-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/5fde384af4578e5455860080289cbb/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.log 463/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/ffb049ef3ddf36c4f7572280c7028d/659_cTi-T1-TRNA-1_B23MHV2LT4_1.log 437/659_cTi-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/afa6a63e7c114d8bcf1b3047c12906/659_cfy-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1872/659_cfy-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/c0e8462ea27575f9606efee2688e4c/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1159/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/c8caafb660a243ef0e602991eb8f71/659_b4x-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 887/659_b4x-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/7ae0aeba27fef8a5f00fad44798111/659_epG-T1-TRNA-1_B23MHV2LT4_1.log 458/659_epG-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/88e35a756bd3c0213c305e5ecd8d62/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 336/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/5e6db1165b7fd12c35ab76c4569de3/659_bTo-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 729/659_bTo-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/151850b67856252a4cab6fd3a54a87/659_cuO-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1738/659_cuO-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/43d9447dfb00598b012dd0050f3f2b/659_cGW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1102/659_cGW-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/d7e941422d7344a4f6638f1342f4e4/659_bTq-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1021/659_bTq-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/e44877442cce936341042b9ede0a30/659_end-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2166/659_end-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/d8a963e088275262be83d78ccd9996/659_bMa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2314/659_bMa-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/4240b3b2bbf95096df3c5ed8d5d242/659_ri-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 244/659_ri-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/f116095ecf45aae699431e1e568a62/659_On-T1-TRNA-2_B23MHV2LT4_1.read_distribution.txt 1480/659_On-T1-TRNA-2_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/be296a7c083192ff06720f60cbd701/659_dRe-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1961/659_dRe-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/ea0a173f40600bd04b7f64e2915559/659_8h-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2020/659_8h-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/8e08babb03f22aa804f24c05b242aa/659_Kh-T1-TRNA-1_B23MHV2LT4_1.fastp.json 4/659_Kh-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/85183fbb9921c1ede5891dc391fe71/659_SP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 323/659_SP-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/8e80fab7403a65e57ee517bec41bf6/659_gK-T1-TRNA-1_B23MHV2LT4_1.fastp.html 175/659_gK-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/1465d55e8d4610cb6f67a9982eb842/659_Mt-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2337/659_Mt-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/9cf23345534bfd7ac86a66e3d697fc/659_ecd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 918/659_ecd-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/761a082d134f972d1fee39b8261f2a/659_cIX-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1016/659_cIX-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/b073a6d09d7bccfcf1d4f4eaa67f29/659_cwv-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1883/659_cwv-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/1ab13232508890e664dcc51ea41aa7/659_eu1-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1273/659_eu1-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/ef417556a3dc7d126dbd1a35e5f646/659_ecd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1009/659_ecd-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/56173131486453e7c863b57b53e12b/659_buD-T1-TRNA-1_B23MHV2LT4_1.log 448/659_buD-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/bd41a75f135eb5f6a36af1c1e3a124/659_Fr-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1885/659_Fr-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/fd2cdf72bc41747ff835803d59528b/659_cRa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1326/659_cRa-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3d48a07ff4884fb901e774e5ff58c8/659_Dd-T1-TRNA-1_B23MHV2LT4_1.fastp.html 178/659_Dd-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/24d0167a5899f79050817ed7c78d3d/659_bIB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1721/659_bIB-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/765f05a9482c61edee72dcabce1f9f/659_epZ-T1-TRNA-1_B23MHV2LT4_1.log 440/659_epZ-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/4cf190e15c521f473c6048ef422dcc/659_dHy-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1813/659_dHy-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/ab972fe68b5f51dd23ef7193da46e2/659_Dd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2301/659_Dd-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/0b17094aad2acc778ccb8f3240bfff/659_cAa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1643/659_cAa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/805aa9f0bf63f65aaf0cce7c539847/659_dKM-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1775/659_dKM-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/78fb0679dd6da10497f95c4fe06559/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.lc_extrap.txt 2096/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/f8bbdde6fa40348fdf3ccd9ff22e42/659_cAa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 875/659_cAa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/39de2a87a55fd189b1011e5533ea6b/659_dQk-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2126/659_dQk-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/a6090bd66794fe0420787204164461/659_On-T1-TRNA-2_B23MHV2LT4_1_kallisto_mqc.tsv 557/659_On-T1-TRNA-2_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/feb6a28cacc60b2899a978e0d6cd83/659_eu1-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1753/659_eu1-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/b4/87c481bdcfeac9577073a8ef0df480/multiqc_config.yml multiqc_config.yml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/68da9b1c3cc8b7aec7f89c88f4f682/659_c95-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 560/659_c95-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/e69628f142fc838eb13975d0aa403e/659_6i-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 251/659_6i-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/b2c8b74ba8c98e82398c99e0dc4a06/659_Lx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 801/659_Lx-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/b431d6a77b6b82c07097016ce2370c/659_bua-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1790/659_bua-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/ea3701a28ce7fefee909b769e25b93/659_cTi-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2335/659_cTi-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/e365d3b9b36f89d61c8e5fe6389d08/659_eGK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1630/659_eGK-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/ae7e52d64b75cbbfd891957f655e48/659_dm4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1757/659_dm4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/dc41939d07c2a8e385a8466f75d0de/659_bIB-T1-TRNA-1_B23MHV2LT4_1.fastp.html 144/659_bIB-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/4d2c323c324d8a968233e2fcdbe015/659_cYf-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1479/659_cYf-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/620a769597fb536b86ae7070b3d65e/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 162/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/47d971ce55320ab5e07ba16bb0b2e1/659_cRa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1717/659_cRa-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/0156d3e930ffa6c8d6cb00af764731/659_cq5-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 490/659_cq5-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/65ce6d0f9e7eec3ab2b9b59d811acb/659_cRa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 851/659_cRa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/724617ffc77b709c9cbdab93598746/659_bUW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2105/659_bUW-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/9f39206d7a4c2521b672cfe5446303/659_cWx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1038/659_cWx-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/cdbb729f64dcfb5c305117a174790f/659_Kh-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1846/659_Kh-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/ce4f9b91f13cb30dd262f021cd72cd/659_e0S-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1361/659_e0S-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/58392918920f15153ecc8f578aaf73/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_1_fastqc.zip 1247/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/f3daabd73867feeb5173eb0b963cd9/659_dXa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1867/659_dXa-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/f731e2e8150472a38b4301fa0e606b/659_cB6-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1146/659_cB6-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/8fbf05d37baeabd4bf157916f418d3/659_cTi-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1216/659_cTi-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/dcf4e6aac46b9e2b6b640590188cc4/659_cRB-T1-TRNA-1_B23MHV2LT4_1.fastp.json 30/659_cRB-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/12e2461540dbf72f129038fbdaf448/659_bua-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1588/659_bua-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/8ca3d43fd7153d113df6cfc5c399d5/659_dRe-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1864/659_dRe-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/511c5d39fddc7a5710a2c2ded8d473/659_bUW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 662/659_bUW-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/a15d7779416388aa4c77903a538061/659_eKx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1935/659_eKx-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/571f9d687d2bf71aa978eda52f3179/659_epG-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1511/659_epG-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/e0fa6a8d707ce25c49907b46fc8395/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1893/659_ciJ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/82b5e8d21fa4d8ead5366ea624dfa7/659_cTi-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 624/659_cTi-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a15f0a3173a89e99e0e7a9b36c32a0/659_bua-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 639/659_bua-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/984d862ccac2be38f3020f519019e5/659_epZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2069/659_epZ-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/491b03508508a564e454d20d987c54/659_bGW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 744/659_bGW-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/f06fdbf8520ecf4db565de251440c3/659_cRB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1565/659_cRB-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9a17c343212d0644bd74ef8e9c6353/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.lc_extrap.txt 2112/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/642b7ab6a89873e1c42595d110f5d2/659_dc8-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1888/659_dc8-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/347d5abb5b349e60f95c397c246778/659_bMa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1106/659_bMa-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/e0ce365cbc41aa8923e5ee0c7a62da/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 528/659_ciZ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/77bf0235ff4fc78c05f4c7e0a7bdad/659_b6o-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1735/659_b6o-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0052c7cef611157aadbee2bf5cb03f/659_buD-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1984/659_buD-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/81261c8ab30a92bc00a5dcc759768d/659_cwv-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 733/659_cwv-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/faaff8008a7f120010449a25db07fa/659_Dl-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 896/659_Dl-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/78bbcfa72463a3a283a10e9f049b66/659_eHw-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2265/659_eHw-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/0a6309a7abc43c15cc37909fdb1648/659_bR4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 813/659_bR4-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/954155465e80ca37ade478c15b004a/659_dXa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1531/659_dXa-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/f0e43ca8cb8c727d8fec7c9194fc40/659_bCu-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 514/659_bCu-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/83ef7631e61812d8765d1d022a6ae2/659_cfy-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1712/659_cfy-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/38bd73ec7e545614cdebf33c840ce1/659_epG-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 317/659_epG-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/a117567e69ff43c671b47ce26dbefc/659_cAd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1290/659_cAd-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/048270aaed615cea1002e251b11c41/659_cAd-T1-TRNA-1_B23MHV2LT4_1.fastp.html 132/659_cAd-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/66ffc4534c1d2311ba029d497f002f/659_dm4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2315/659_dm4-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9279beceb301aee3d8dead31d5f004/659_dkd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1455/659_dkd-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/46dbcc4a070de16ae5cff5eceac3fe/659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1910/659_bIB-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/71bab4fde919714684ba6b0bacf7be/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 764/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/f017d44553493afa03c7dd859266e5/659_8h-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 868/659_8h-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/395f97f3938520b0a1fd923f08f162/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1420/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/1beaf67d79bacc9e3957e806e64a17/659_dfA-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2381/659_dfA-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/30ce7124857db5b6c98753c9363ce9/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.junction_annotation.log 1039/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/43ce7e74872df29e098aa4bcf5f1df/659_buj-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1256/659_buj-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/63cbb1953f61589153f4aaf200d628/NTC_0001_0001_B23MHV2LT4_1.bam_stat.txt 1269/NTC_0001_0001_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/8d3e4e0e6b49539a96e5a2ad3f770f/659_cRB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2244/659_cRB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2dbcb5d42bbddd7b0f6c679ec2b2cb/659_djb-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2331/659_djb-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/e78997f186db6410bc190cb3c9f1c7/659_bua-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1974/659_bua-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ad16afc378a456258620e3048afd6f/659_b4x-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 983/659_b4x-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/3c374dbdc5daa37854a2154c7ba133/659_cfy-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 816/659_cfy-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/3eca7fa527c30f5d34d6c93a7f63e4/659_dwi-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1934/659_dwi-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/fe6cea5b3c75426174666ac680ac13/659_rd-T1-TRNA-1_B23MHV2LT4_1.fastp.json 33/659_rd-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/b555056f30fcebef2c6affdf740f23/659_bCu-T1-TRNA-1_B23MHV2LT4_1.fastp.json 35/659_bCu-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/ada2d65c8abfaec0a3fd1b2237716e/659_Dd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 852/659_Dd-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/cc134ef10a8316246557020b6cdaba/659_epG-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1190/659_epG-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/c5cba670ee28c37ac985213866d016/659_Dl-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 509/659_Dl-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/68dd7b57dfa03c42e8e8f3e93025fb/659_epP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1826/659_epP-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/886ceeef7186c4479c551f49864c80/659_Dl-T1-TRNA-1_B23MHV2LT4_1.fastp.html 124/659_Dl-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/f42ea1012b330495614d98d882c4de/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_2_fastqc.zip 1198/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/35dc92c0bd4a004d4766e0d9df1543/659_dfA-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 565/659_dfA-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/6334e7f479671b6d6c6f296ae1b7c3/659_eHw-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1054/659_eHw-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/8c7306f751160a468408ede4d04c1c/659_egp-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 883/659_egp-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/738e60d5c295f4b28aff19903bd1b2/659_buj-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 968/659_buj-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d9191f5d5e4a32e305fdd2e67f8679/659_buD-T1-TRNA-1_B23MHV2LT4_1.fastp.json 56/659_buD-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/9727c122bd13125c2c41b788596c5a/659_cRa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2286/659_cRa-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/9e706db787ddf3392d2098c102d2f5/659_bhK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2343/659_bhK-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/ce2c740533405743504fe2868e0579/659_dQk-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 974/659_dQk-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/42625727bd3d981655519bec373a99/659_d01-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 814/659_d01-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/506c2008f33ed6dac78f887aafe833/659_cq5-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1449/659_cq5-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/7956db6e5066a8f752e50b90c359ee/659_dXa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 911/659_dXa-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/122e27f895aaff4b3c2de6759c5911/659_8h-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1060/659_8h-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/799b4de696f43d69a6ab70b84d4116/659_cGW-T1-TRNA-1_B23MHV2LT4_1.log 408/659_cGW-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/cdba761fd055d8f256f70aa96dcd0c/659_R1-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2213/659_R1-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/922ee6074245804a69c9dc40825fe1/659_Dl-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 254/659_Dl-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6861de43c8a7a89188502e33662e9f/659_d0M-T1-TRNA-1_B23MHV2LT4_1.fastp.json 12/659_d0M-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/79095b3080225942a772a72abb01b2/659_cRa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 296/659_cRa-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/de57af723f68fcec827ae182e4d41d/659_wQ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1342/659_wQ-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3416c1c94d858f135358c36017add6/659_Mt-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 281/659_Mt-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/142a2b1c40203bbafcf7463766366c/659_cVw-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1217/659_cVw-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/ba47ae4fa3bd5a7e0cb0003b5e907b/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.junction_annotation.log 1025/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/15f7d615690c5e02da7a08acc5f63e/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.Log.final.out 654/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/e0502f8c4ad334ccfeb7f795680779/659_bua-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2065/659_bua-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/f363cdb79be86a11f8bd59332ddf69/659_cVw-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1046/659_cVw-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/6f7630cee603730f0eeaf7d9ddf562/659_dQk-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1081/659_dQk-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/048270aaed615cea1002e251b11c41/659_cAd-T1-TRNA-1_B23MHV2LT4_1.fastp.json 36/659_cAd-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/a9653c902e22a5054b047d89cbfd4a/659_c95-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2289/659_c95-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/f9770bc5feda0717ae6f08e76b28e3/659_cAa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 971/659_cAa-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/1f67e0ef59a8e8c9b2dfa73e02d694/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.md.bam.metrics 1902/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/5d3b5cf9828d58ae0661de14c8f2bb/659_Wm-T1-TRNA-1_B23MHV2LT4_1.log 390/659_Wm-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3cf9b55010f896246691249fce90ad/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_trimmed_1_fastqc.zip 355/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e6661efe0c3ec25354c60c591fbc35/659_Lx-T1-TRNA-1_B23MHV2LT4_1.log 419/659_Lx-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/eb824982e27e97c34f20e506a6ef28/659_bR4-T1-TRNA-1_B23MHV2LT4_1.log 446/659_bR4-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/eb93ebfe91944f77f27378ec08cdab/659_cVw-T1-TRNA-1_B23MHV2LT4_1.log 475/659_cVw-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/efa66b4a7d23d32e0e904c0d715543/659_dKM-T1-TRNA-1_B23MHV2LT4_1.log 428/659_dKM-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0dc63eebafb9a62ffc00f421b7a5d0/659_cuO-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 682/659_cuO-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/785cad82815fb1185eb0d20d6c5f9e/NTC_0001_0001_B23MHV2LT4_1.ReadsPerGene.out.tab 693/NTC_0001_0001_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/da3d85fbb4def0a2319132cacae73a/659_SP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1302/659_SP-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/965bb0d480e65930458d1b81da9b83/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_kallisto_mqc.tsv 578/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/def47168791cea6979d51cd755864d/659_epZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1051/659_epZ-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/0d1a186fba02acc57eaa8ce73cd748/659_eGK-T1-TRNA-1_B23MHV2LT4_1.log 456/659_eGK-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/246eb1230969e83605eecd3581d4a8/659_gK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt 2093/659_gK-T1-TRNA-1_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/cc6c851fa6959940a08a0e745fa4ad/659_bR4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 542/659_bR4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/c53a78d9cb91f67cc2492cc21aff0a/659_e0S-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1088/659_e0S-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/ad79a2f0e51117a56884ab10362766/659_cfy-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1390/659_cfy-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/313f720b41a9216da488048d1165d7/659_e0S-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1553/659_e0S-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/3ff1234c433e62044f40c440eb839b/659_R1-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1542/659_R1-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/77d9f679daac5ed7429dc4df43d3bb/659_dkd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 495/659_dkd-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/f900731cb915535f49f7edbf0a87ce/659_R1-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1828/659_R1-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3cf9b55010f896246691249fce90ad/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_trimmed_2_fastqc.zip 356/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/2610d6a7b09fab87f1c14d6ebd72ec/659_eu1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 601/659_eu1-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/f837e5d66517ec30cda63eea03d10c/659_cYf-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2279/659_cYf-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8a012b63923054d002aef3b70137b1/659_dQk-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 218/659_dQk-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/34f526e57e52c5294505692ef7682b/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 2009/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/86ac223abad1512f22071b99777283/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1173/659_ciJ-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/5e239467e28c477fef3617d4d702da/659_eGK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1185/659_eGK-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0bc01937777083badfe583c4eea150/659_b4x-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1847/659_b4x-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/dddecfed4a6c1f41ac206034711c4b/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 765/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/864d98491ae90edcf324b9d737b0fc/659_c95-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1323/659_c95-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/d86723a0a29a7143d7281f9e3c3500/659_e0S-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1745/659_e0S-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/b0a514e966684a09b25848875ac48c/659_mK-T1-TRNA-2_B23MHV2LT4_1.junctionSaturation_plot.r 1679/659_mK-T1-TRNA-2_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/a675a1d081cb462f67cb7f26d36fe4/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.pos.DupRate.xls 1825/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/4decc2c172ae4908ddad4c0933ad5d/659_cGW-T1-TRNA-1_B23MHV2LT4_1.fastp.html 120/659_cGW-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9f993d8404bf9180ff4e8dcbcc8119/659_dm4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1112/659_dm4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/1f23b589cb603986a8c25fe20977ca/659_cfy-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 300/659_cfy-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/0239dfefad19ffb90b2507c82b8a2d/659_ePR-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1682/659_ePR-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/8b4bffaac9820f19554b2a79a1f12a/659_bNS-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 722/659_bNS-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/363c4735509e488ba78b818ca00f49/659_egp-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 691/659_egp-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/731a79c7ea32500a45fac8abaee054/659_Fr-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1175/659_Fr-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/1a8da5a9b4091355bcdaa3b3d71ae9/NTC_0001_0001_B23MHV2LT4_1.attempt1.command.log 2133/NTC_0001_0001_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/78be2548a4b75bf88870af6acee498/659_egp-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2227/659_egp-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/1d2835edd074fc4f87ae890698508b/659_cVw-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 372/659_cVw-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/925671e92336c518a40363e39a15c8/659_e0S-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1457/659_e0S-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/eabd6f2b668f975d988f39ba8f0e0b/659_wQ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2298/659_wQ-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/185542aa1521efb55041f830d09d90/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1228/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/685f8c7e02c8a69aae9f9b22b4535b/659_b6o-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1830/659_b6o-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/6f82a2f4365c84ec5d16306880c9c2/659_ezg-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1512/659_ezg-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/636903b87aecbb4a5e3657a975b307/NTC_0001_0001_B23MHV2LT4_2.inner_distance_freq.txt 886/NTC_0001_0001_B23MHV2LT4_2.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/9640df4417a4d679ab05e754957296/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.md.bam.metrics 1899/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/610426c641c2f1953360d8f5565678/659_b6o-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 487/659_b6o-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/62afcb59addd46ace0d1dfff3bdfd2/659_dXa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1582/659_dXa-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/85b4f4932d763db298e06163ff067a/659_cRB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1758/659_cRB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/2d6cc4c1ac5b18c235e1b2bce0982a/659_dKM-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1581/659_dKM-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/de31fc4099b0d90e23898a52664b56/659_bUs-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 653/659_bUs-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/444fce4e4430a0565efe77da5a45b4/659_cIX-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1202/659_cIX-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/ca0c23eb1195bbea7fa1d59cc80c5c/659_eeB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2228/659_eeB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/40fd77a04d3eb4c52db4237c1bec36/NTC_0001_0001_B23MHV2LT4_1.read_distribution.txt 1461/NTC_0001_0001_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/7b24db85c12833593e76b221265a0f/659_bhK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 830/659_bhK-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/69bc7ae6794b77defd02489b3f6d7b/659_cq5-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 681/659_cq5-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/43606c6cb66a4d00c13d77a8aa6e57/659_buD-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 826/659_buD-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/393599a2b31edf64897027855d02a7/659_bMa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1948/659_bMa-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/5578073fc1808060e25faa5cb60bdf/659_cGW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2136/659_cGW-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/036952f10d607f6f77dcbd3ad4d73b/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1803/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/f3de17126731c35dfec53739746b09/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.junctionSaturation_plot.r 1730/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/b33ac13a016dcf8752aed225fcad2f/659_buj-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 776/659_buj-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0010bd50e3140ed6e94701c0f9e87e/659_dKM-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1485/659_dKM-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/0b5d1214f2544c032213f5656774dd/659_cB6-T1-TRNA-1_B23MHV2LT4_1.fastp.html 155/659_cB6-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/763fc7c1c6c21c5d7855a4091a5f15/659_c95-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2383/659_c95-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/8e748b8ccceee1d9f8acd84a949455/659_dES-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1144/659_dES-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/6e94b4cd31fe332277476b779f1582/659_epG-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1797/659_epG-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/cf12445c40e86de0da723f5e48e766/659_bKP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2249/659_bKP-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/9c43bdb841910e432b707a3371459c/659_Kh-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 579/659_Kh-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/9022dce0bb3a1003e4abb1305788b3/659_bMa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 796/659_bMa-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/2d6ccde1ef14678627d3c22da62f83/659_rd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1120/659_rd-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/38646b4e6ac733dde8881ef7cd2d57/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_contamination_mqc.tsv 1633/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/554dad58942e478287b3225939ba34/659_b4x-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log 2135/659_b4x-T1-TRNA-1_B23MHV2LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/092618f5921aef8cfa7fdb4c3e09c3/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv 1430/659_eZ4-T1-TRNA-1_B23MHV2LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/92d313f6c771df129441570a4a3839/659_eu1-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 889/659_eu1-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d6ada2ee44e4a0ba1472a839c5569b/659_6i-T1-TRNA-1_B23MHV2LT4_1.fastp.json 32/659_6i-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/8b8b1ef5e708cab6dbda26fd960cab/659_Dl-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 704/659_Dl-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/bf225f46fc7f8f3d2bd6e0c3346a00/659_cWx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1515/659_cWx-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/ded85a7fd95d2807405a7eca7a2199/659_end-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1887/659_end-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/55fa17ab1a8b5c22badfaf32c91724/659_On-T1-TRNA-2_B23MHV2LT4_1.bam_stat.txt 1289/659_On-T1-TRNA-2_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/342bd865d6efcbc7d80f7597f1fa94/659_bR4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1134/659_bR4-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/03ba64eedd525bfcf0a094f36e9aa2/659_wQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 342/659_wQ-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/baa4a1d7234213a659487127b351e9/659_dwi-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1648/659_dwi-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c6d55df3f645d523dccba30f470d33/659_d0V-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 493/659_d0V-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/75c8977b735a5f262542f8a9491b69/659_cTi-T1-TRNA-1_B23MHV2LT4_1.fastp.html 158/659_cTi-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/58ab6c4e1814b847fe62d10e61a165/659_d0V-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1836/659_d0V-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/76ce254ca615c5cd1ae82b7c3c30fb/659_Wm-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 965/659_Wm-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/9a69cc53ce5d9e3c9400a62db809d1/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.log 478/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/a7764409199cbcd1a270a8e90aea5e/659_bGc-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1476/659_bGc-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/77cd1a7fc40dee5788b6380af1bc75/659_bUs-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1900/659_bUs-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0e3407280f7f4c8302f6a571a6ca88/659_cB6-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2296/659_cB6-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/02694a15da9e363970b1143595ce6c/659_bR4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1772/659_bR4-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/60d5845ac0bc4e545d10f98f4cba47/659_d0V-T1-TRNA-1_B23MHV2LT4_1.fastp.json 13/659_d0V-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/4c26b8f0946990062c8dbfd15b0478/659_zO-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1508/659_zO-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/b9317e181bb9d53839e8ebb5ec7ccd/659_bR4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2276/659_bR4-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/aeeb64adfa621ea665a70237dd969c/659_bKP-T1-TRNA-1_B23MHV2LT4_1.log 462/659_bKP-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d9403ec3b6a20f5f5717ab60a3e538/659_cB6-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 1047/659_cB6-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/3c5c397f2448851233023901deb763/659_d0M-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 588/659_d0M-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/1c25fda02081d03edf80e701f46d5d/659_bIB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt 1525/659_bIB-T1-TRNA-1_B23MHV2LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/61344d193db79d14968644c2919578/659_ri-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1274/659_ri-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/8a8c5d79060dd97f358c30bb85e1ba/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1720/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d2fd769a925fc6192429b1f142d48b/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 345/659_b7Z-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/d8cdb3687d048fcecf7ec486b5f711/659_cRB-T1-TRNA-1_B23MHV2LT4_1.log 414/659_cRB-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/d49d68ff3e71b0706047dace7d2f15/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 957/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3918923025148acc244d229e0ac24d/659_bKP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 919/659_bKP-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/c206c6898d0aa76ebab8b1f85ffc63/659_eeB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls 1748/659_eeB-T1-TRNA-1_B23MHV2LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/cfa7fab9c5e983c7684d58e8f8ad19/659_ePR-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab 725/659_ePR-T1-TRNA-1_B23MHV2LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/13029327d6e901195b5e32ee351d34/659_bNS-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv 541/659_bNS-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/1fff650f13e7b04399c6bd07e78620/659_Dl-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt 1280/659_Dl-T1-TRNA-1_B23MHV2LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/b5f5410d702364c302a9da6fe21926/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_preseq_mqc.tsv 2292/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/76a992d79a95b49f29c1794040094d/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_kallisto_mqc.tsv 574/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/23b631c6a3615c2061b1d25634a053/659_cWx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt 943/659_cWx-T1-TRNA-1_B23MHV2LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/0bb367da7518aa7331b8d051a014f5/659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics 1920/659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3abef117b83aa655c423bafaec34a3/659_dKM-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1154/659_dKM-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/1a8da5a9b4091355bcdaa3b3d71ae9/NTC_0001_0001_B23MHV2LT4_1.lc_extrap.txt 2037/NTC_0001_0001_B23MHV2LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/6a7412ee7576945f7ac035ac37e8df/659_d0M-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log 972/659_d0M-T1-TRNA-1_B23MHV2LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/63b50f973802681dfeef29a28e952a/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html 147/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/8d52a696f2d6eb77e90f5554a244b2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 604/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/40211639870d7f6e595cb75e307226/659_cGW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv 1944/659_cGW-T1-TRNA-1_B23MHV2LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/5d70747b28eaf74749e42b2e1d2e05/659_dfA-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 835/659_dfA-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/7fb54f9ef6c97854f6384561d84261/659_bUs-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1213/659_bUs-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/7affa8105ca698e7bc2f4f40239f4c/659_ePR-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv 1590/659_ePR-T1-TRNA-1_B23MHV2LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/50353c84a18e679339c4d09c2bc744/659_eKx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1090/659_eKx-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/35e0635973d6b1c91ab49b386ce917/659_eHw-T1-TRNA-1_B23MHV2LT4_1.log 441/659_eHw-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/77f88c39c9acac8f8a80a862a1edf8/659_cfy-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip 1208/659_cfy-T1-TRNA-1_B23MHV2LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/4406a1f8e32a730f9f78123c2592df/659_6i-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2239/659_6i-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/540d7f86b0efcff8ae2144cdfeccd2/659_bIB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv 2275/659_bIB-T1-TRNA-1_B23MHV2LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/83ed7825012c6e9af92394e8102ac9/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf 2360/659_bjQ-T1-TRNA-1_B23MHV2LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/619327e3df687db584a08869c6afbb/659_epP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip 1225/659_epP-T1-TRNA-1_B23MHV2LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/907f48cee52cf9c3d454445524528c/659_Mt-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r 1692/659_Mt-T1-TRNA-1_B23MHV2LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/a90e89a4a409acc414d30c0d634181/659_Dl-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt 800/659_Dl-T1-TRNA-1_B23MHV2LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/81261c8ab30a92bc00a5dcc759768d/659_cwv-T1-TRNA-1_B23MHV2LT4_1.Log.final.out 637/659_cwv-T1-TRNA-1_B23MHV2LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/797fb2eb17f69affb0ce20b6ecf7de/659_ri-T1-TRNA-1_B23MHV2LT4_1.fastp.json 27/659_ri-T1-TRNA-1_B23MHV2LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a66a658a7371db81b2d18d4f66dda8/659_c95-T1-TRNA-1_B23MHV2LT4_1.log 464/659_c95-T1-TRNA-1_B23MHV2LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/bb1eca49e0df2b8450be9cb11d65e1/659_Kh-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip 198/659_Kh-T1-TRNA-1_B23MHV2LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a089650397753a549c5e98a3cc9422/659_bhK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip 329/659_bhK-T1-TRNA-1_B23MHV2LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/b6db69d2d48f16044c3ddfa9353c4b/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_1_fastqc.zip 1235/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2_1_fastqc.zip")
nxf_parallel "${downloads[@]}"
echo "==> STAGING COMPLETE (2387 inputs)"
echo ""
}
nxf_unstage_outputs() {
true
uploads=()
IFS=$'\n'
for name in $(eval "ls -1d *multiqc_report.html *_data *_plots versions.yml" | sort | uniq); do
uploads+=("nxf_s3_upload '$name' s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8")
done
unset IFS
nxf_parallel "${uploads[@]}"
}
nxf_unstage_controls() {
true
nxf_s3_upload .command.out s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8 || true
nxf_s3_upload .command.err s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8 || true
nxf_s3_upload .command.trace s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8 || true
}
nxf_unstage() {
if [[ ${nxf_main_ret:=0} == 0 ]]; then
(set -e -o pipefail; (nxf_unstage_outputs | tee -a .command.out) 3>&1 1>&2 2>&3 | tee -a .command.err)
nxf_unstage_ret=$?
fi
nxf_unstage_controls
}
nxf_main() {
trap on_exit EXIT
trap on_term TERM INT USR2
trap '' USR1
[[ "${NXF_CHDIR:-}" ]] && cd "$NXF_CHDIR"
NXF_SCRATCH="$(set +u; nxf_mktemp /tmp)"
[[ $NXF_DEBUG > 0 ]] && nxf_env
echo start | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/039b023e82956c9ac2bc728943e9c8/.command.begin
set +u
set -u
/opt/s5cmd/bin/s5cmd --log error cp "s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/7e/d84a384e53e0975ced2e844fe9ef5c/bin/*" $NXF_SCRATCH/nextflow-bin/
chmod +x $NXF_SCRATCH/nextflow-bin/* || true
export PATH=$NXF_SCRATCH/nextflow-bin:$PATH
export PYTHONNOUSERSITE="1"
export R_PROFILE_USER="/.Rprofile"
export R_ENVIRON_USER="/.Renviron"
export JULIA_DEPOT_PATH="/usr/local/share/julia"
[[ $NXF_SCRATCH ]] && cd $NXF_SCRATCH
export NXF_TASK_WORKDIR="$PWD"
nxf_stage
set +e
(set -o pipefail; (nxf_launch | tee .command.out) 3>&1 1>&2 2>&3 | tee .command.err) &
pid=$!
wait $pid || nxf_main_ret=$?
nxf_unstage
}
$NXF_ENTRY