Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/1cb088b83f0f9ad9be2a88c88eff55/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b2f8811266770ed73805b6cceb677d/659_zO-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/1cb088b83f0f9ad9be2a88c88eff55/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory