Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/49e71f92ecd8e98373c28a72e68b97/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/4ffe1b295810a10915c3c4898f823b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/4ffe1b295810a10915c3c4898f823b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/65e236d8a4b055929d62b19afb2401/659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 358339020
[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	358339020
Known Splicing Events:	355480936
Partial Novel Splicing Events:	1299610
Novel Splicing Events:	1469345
Filtered Splicing Events:	89129

Total splicing  Junctions:	576565
Known Splicing Junctions:	281454
Partial Novel Splicing Junctions:	162491
Novel Splicing Junctions:	132620

===================================================================
Create BED file ...
Create Interact file ...