Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4c0a14033590134598dfb07ab67e08/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4c0a14033590134598dfb07ab67e08/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/b8f8c87dd09599a9c5c0311e2153b1/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 21:18:46.025 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Thu Jun 04 21:18:46 GMT 2026] MarkDuplicates --INPUT 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu Jun 04 21:18:46 GMT 2026] Executing as ?@nf-124c0a14033590134598dfb07ab67e08-d75af-djn46 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-04 21:18:46 MarkDuplicates Start of doWork freeMemory: 105828016; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-04 21:18:46 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-04 21:18:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-04 21:18:49 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,532,862 INFO 2026-06-04 21:18:49 MarkDuplicates Tracking 2437 as yet unmatched pairs. 315 records in RAM. INFO 2026-06-04 21:18:51 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:6,192,955 INFO 2026-06-04 21:18:51 MarkDuplicates Tracking 8063 as yet unmatched pairs. 3801 records in RAM. INFO 2026-06-04 21:18:53 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:9,735,465 INFO 2026-06-04 21:18:53 MarkDuplicates Tracking 6566 as yet unmatched pairs. 405 records in RAM. INFO 2026-06-04 21:18:54 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:11,790,626 INFO 2026-06-04 21:18:54 MarkDuplicates Tracking 8746 as yet unmatched pairs. 559 records in RAM. INFO 2026-06-04 21:18:57 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:15,848,103 INFO 2026-06-04 21:18:57 MarkDuplicates Tracking 10368 as yet unmatched pairs. 284 records in RAM. INFO 2026-06-04 21:18:58 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:17,656,056 INFO 2026-06-04 21:18:58 MarkDuplicates Tracking 12517 as yet unmatched pairs. 459 records in RAM. INFO 2026-06-04 21:19:00 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:20,653,681 INFO 2026-06-04 21:19:00 MarkDuplicates Tracking 16304 as yet unmatched pairs. 2247 records in RAM. INFO 2026-06-04 21:19:02 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,759 INFO 2026-06-04 21:19:02 MarkDuplicates Tracking 18802 as yet unmatched pairs. 2844 records in RAM. INFO 2026-06-04 21:19:04 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:23,693,806 INFO 2026-06-04 21:19:04 MarkDuplicates Tracking 19776 as yet unmatched pairs. 1843 records in RAM. INFO 2026-06-04 21:19:06 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:26,280,865 INFO 2026-06-04 21:19:06 MarkDuplicates Tracking 24624 as yet unmatched pairs. 4861 records in RAM. INFO 2026-06-04 21:19:08 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:27,547,976 INFO 2026-06-04 21:19:08 MarkDuplicates Tracking 21972 as yet unmatched pairs. 303 records in RAM. INFO 2026-06-04 21:19:10 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:31,425,870 INFO 2026-06-04 21:19:10 MarkDuplicates Tracking 26280 as yet unmatched pairs. 2580 records in RAM. INFO 2026-06-04 21:19:12 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,502 INFO 2026-06-04 21:19:12 MarkDuplicates Tracking 26774 as yet unmatched pairs. 1078 records in RAM. INFO 2026-06-04 21:19:13 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:35,641,368 INFO 2026-06-04 21:19:13 MarkDuplicates Tracking 27970 as yet unmatched pairs. 226 records in RAM. INFO 2026-06-04 21:19:15 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,388,500 INFO 2026-06-04 21:19:15 MarkDuplicates Tracking 29924 as yet unmatched pairs. 284 records in RAM. INFO 2026-06-04 21:19:17 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:42,456,570 INFO 2026-06-04 21:19:17 MarkDuplicates Tracking 32164 as yet unmatched pairs. 620 records in RAM. INFO 2026-06-04 21:19:19 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:43,609,414 INFO 2026-06-04 21:19:19 MarkDuplicates Tracking 35165 as yet unmatched pairs. 1498 records in RAM. INFO 2026-06-04 21:19:21 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:45,013,149 INFO 2026-06-04 21:19:21 MarkDuplicates Tracking 36471 as yet unmatched pairs. 849 records in RAM. INFO 2026-06-04 21:19:23 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:46,184,969 INFO 2026-06-04 21:19:23 MarkDuplicates Tracking 40312 as yet unmatched pairs. 2797 records in RAM. INFO 2026-06-04 21:19:25 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:47,067,495 INFO 2026-06-04 21:19:25 MarkDuplicates Tracking 61106 as yet unmatched pairs. 21751 records in RAM. INFO 2026-06-04 21:19:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:47,094,650 INFO 2026-06-04 21:19:26 MarkDuplicates Tracking 56072 as yet unmatched pairs. 15403 records in RAM. INFO 2026-06-04 21:19:28 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:50,475,341 INFO 2026-06-04 21:19:28 MarkDuplicates Tracking 42873 as yet unmatched pairs. 410 records in RAM. INFO 2026-06-04 21:19:29 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:54,043,390 INFO 2026-06-04 21:19:29 MarkDuplicates Tracking 49271 as yet unmatched pairs. 4904 records in RAM. INFO 2026-06-04 21:19:31 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:61,823,066 INFO 2026-06-04 21:19:31 MarkDuplicates Tracking 46947 as yet unmatched pairs. 643 records in RAM. INFO 2026-06-04 21:19:33 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:71,070,795 INFO 2026-06-04 21:19:33 MarkDuplicates Tracking 48655 as yet unmatched pairs. 495 records in RAM. INFO 2026-06-04 21:19:35 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:85,321,360 INFO 2026-06-04 21:19:35 MarkDuplicates Tracking 50532 as yet unmatched pairs. 534 records in RAM. INFO 2026-06-04 21:19:37 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:86,494,215 INFO 2026-06-04 21:19:37 MarkDuplicates Tracking 57449 as yet unmatched pairs. 5740 records in RAM. INFO 2026-06-04 21:19:38 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:89,007,755 INFO 2026-06-04 21:19:38 MarkDuplicates Tracking 53686 as yet unmatched pairs. 321 records in RAM. INFO 2026-06-04 21:19:40 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:97,373,617 INFO 2026-06-04 21:19:40 MarkDuplicates Tracking 55424 as yet unmatched pairs. 250 records in RAM. INFO 2026-06-04 21:19:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:109,172,490 INFO 2026-06-04 21:19:41 MarkDuplicates Tracking 58717 as yet unmatched pairs. 1902 records in RAM. INFO 2026-06-04 21:19:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:110,891,406 INFO 2026-06-04 21:19:43 MarkDuplicates Tracking 59217 as yet unmatched pairs. 499 records in RAM. INFO 2026-06-04 21:19:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:113,683,475 INFO 2026-06-04 21:19:44 MarkDuplicates Tracking 60998 as yet unmatched pairs. 379 records in RAM. INFO 2026-06-04 21:19:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:116,390,376 INFO 2026-06-04 21:19:46 MarkDuplicates Tracking 64513 as yet unmatched pairs. 2011 records in RAM. INFO 2026-06-04 21:19:48 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:119,768,693 INFO 2026-06-04 21:19:48 MarkDuplicates Tracking 65253 as yet unmatched pairs. 896 records in RAM. INFO 2026-06-04 21:19:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:144,429,756 INFO 2026-06-04 21:19:49 MarkDuplicates Tracking 66716 as yet unmatched pairs. 899 records in RAM. INFO 2026-06-04 21:19:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:146,966,639 INFO 2026-06-04 21:19:50 MarkDuplicates Tracking 67514 as yet unmatched pairs. 584 records in RAM. INFO 2026-06-04 21:19:52 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:148,978,373 INFO 2026-06-04 21:19:52 MarkDuplicates Tracking 68185 as yet unmatched pairs. 298 records in RAM. INFO 2026-06-04 21:19:54 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,018 INFO 2026-06-04 21:19:54 MarkDuplicates Tracking 71086 as yet unmatched pairs. 2183 records in RAM. INFO 2026-06-04 21:19:56 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:150,747,840 INFO 2026-06-04 21:19:56 MarkDuplicates Tracking 73652 as yet unmatched pairs. 2861 records in RAM. INFO 2026-06-04 21:19:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:151,365,769 INFO 2026-06-04 21:19:58 MarkDuplicates Tracking 76852 as yet unmatched pairs. 4268 records in RAM. INFO 2026-06-04 21:19:59 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:153,390,126 INFO 2026-06-04 21:19:59 MarkDuplicates Tracking 82570 as yet unmatched pairs. 7973 records in RAM. INFO 2026-06-04 21:20:01 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,420 INFO 2026-06-04 21:20:01 MarkDuplicates Tracking 95164 as yet unmatched pairs. 18587 records in RAM. INFO 2026-06-04 21:20:03 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,926,374 INFO 2026-06-04 21:20:03 MarkDuplicates Tracking 78760 as yet unmatched pairs. 389 records in RAM. INFO 2026-06-04 21:20:05 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,133,779 INFO 2026-06-04 21:20:05 MarkDuplicates Tracking 81089 as yet unmatched pairs. 642 records in RAM. INFO 2026-06-04 21:20:06 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,308,931 INFO 2026-06-04 21:20:06 MarkDuplicates Tracking 82441 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-04 21:20:08 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,009,631 INFO 2026-06-04 21:20:08 MarkDuplicates Tracking 87620 as yet unmatched pairs. 3687 records in RAM. INFO 2026-06-04 21:20:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,309,178 INFO 2026-06-04 21:20:09 MarkDuplicates Tracking 86970 as yet unmatched pairs. 943 records in RAM. INFO 2026-06-04 21:20:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:160,030,930 INFO 2026-06-04 21:20:10 MarkDuplicates Tracking 88030 as yet unmatched pairs. 91 records in RAM. INFO 2026-06-04 21:20:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,100,763 INFO 2026-06-04 21:20:12 MarkDuplicates Tracking 90158 as yet unmatched pairs. 257 records in RAM. INFO 2026-06-04 21:20:13 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:164,807,671 INFO 2026-06-04 21:20:13 MarkDuplicates Tracking 93523 as yet unmatched pairs. 1766 records in RAM. INFO 2026-06-04 21:20:15 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:169,124,941 INFO 2026-06-04 21:20:15 MarkDuplicates Tracking 103498 as yet unmatched pairs. 9862 records in RAM. INFO 2026-06-04 21:20:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:171,557,899 INFO 2026-06-04 21:20:17 MarkDuplicates Tracking 96897 as yet unmatched pairs. 1411 records in RAM. INFO 2026-06-04 21:20:19 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:179,087,974 INFO 2026-06-04 21:20:19 MarkDuplicates Tracking 97593 as yet unmatched pairs. 186 records in RAM. INFO 2026-06-04 21:20:20 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:183,635,577 INFO 2026-06-04 21:20:20 MarkDuplicates Tracking 99529 as yet unmatched pairs. 248 records in RAM. INFO 2026-06-04 21:20:22 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,359,936 INFO 2026-06-04 21:20:22 MarkDuplicates Tracking 103236 as yet unmatched pairs. 2200 records in RAM. INFO 2026-06-04 21:20:23 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:201,387,047 INFO 2026-06-04 21:20:23 MarkDuplicates Tracking 104109 as yet unmatched pairs. 1198 records in RAM. INFO 2026-06-04 21:20:25 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:203,800,254 INFO 2026-06-04 21:20:25 MarkDuplicates Tracking 105614 as yet unmatched pairs. 799 records in RAM. INFO 2026-06-04 21:20:26 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:206,476,741 INFO 2026-06-04 21:20:26 MarkDuplicates Tracking 106931 as yet unmatched pairs. 164 records in RAM. INFO 2026-06-04 21:20:28 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,505 INFO 2026-06-04 21:20:28 MarkDuplicates Tracking 124604 as yet unmatched pairs. 15735 records in RAM. INFO 2026-06-04 21:20:29 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,529 INFO 2026-06-04 21:20:29 MarkDuplicates Tracking 126267 as yet unmatched pairs. 15299 records in RAM. INFO 2026-06-04 21:20:31 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:208,034,449 INFO 2026-06-04 21:20:31 MarkDuplicates Tracking 113064 as yet unmatched pairs. 255 records in RAM. INFO 2026-06-04 21:20:32 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:220,001,152 INFO 2026-06-04 21:20:32 MarkDuplicates Tracking 115101 as yet unmatched pairs. 332 records in RAM. INFO 2026-06-04 21:20:34 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:224,114,361 INFO 2026-06-04 21:20:34 MarkDuplicates Tracking 117019 as yet unmatched pairs. 317 records in RAM. INFO 2026-06-04 21:20:35 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,366 INFO 2026-06-04 21:20:35 MarkDuplicates Tracking 124127 as yet unmatched pairs. 5574 records in RAM. INFO 2026-06-04 21:20:37 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:228,493,129 INFO 2026-06-04 21:20:37 MarkDuplicates Tracking 121689 as yet unmatched pairs. 1030 records in RAM. INFO 2026-06-04 21:20:39 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:235,138,091 INFO 2026-06-04 21:20:39 MarkDuplicates Tracking 123019 as yet unmatched pairs. 337 records in RAM. INFO 2026-06-04 21:20:41 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:244,417,681 INFO 2026-06-04 21:20:41 MarkDuplicates Tracking 125096 as yet unmatched pairs. 499 records in RAM. INFO 2026-06-04 21:20:43 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:272,134 INFO 2026-06-04 21:20:43 MarkDuplicates Tracking 127708 as yet unmatched pairs. 126149 records in RAM. INFO 2026-06-04 21:20:45 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:11,343,996 INFO 2026-06-04 21:20:45 MarkDuplicates Tracking 129236 as yet unmatched pairs. 127651 records in RAM. INFO 2026-06-04 21:20:47 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:24,067,758 INFO 2026-06-04 21:20:47 MarkDuplicates Tracking 131300 as yet unmatched pairs. 129696 records in RAM. INFO 2026-06-04 21:20:48 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:26,402,038 INFO 2026-06-04 21:20:48 MarkDuplicates Tracking 131982 as yet unmatched pairs. 130365 records in RAM. INFO 2026-06-04 21:20:50 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:28,025,261 INFO 2026-06-04 21:20:50 MarkDuplicates Tracking 134408 as yet unmatched pairs. 132776 records in RAM. INFO 2026-06-04 21:20:52 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,503,114 INFO 2026-06-04 21:20:52 MarkDuplicates Tracking 136527 as yet unmatched pairs. 134864 records in RAM. INFO 2026-06-04 21:20:54 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-04 21:20:54 MarkDuplicates Tracking 472221 as yet unmatched pairs. 106987 records in RAM. INFO 2026-06-04 21:20:56 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:20:56 MarkDuplicates Tracking 978252 as yet unmatched pairs. 65996 records in RAM. INFO 2026-06-04 21:20:57 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:20:57 MarkDuplicates Tracking 984995 as yet unmatched pairs. 65375 records in RAM. INFO 2026-06-04 21:20:59 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:39,022,758 INFO 2026-06-04 21:20:59 MarkDuplicates Tracking 1032477 as yet unmatched pairs. 61124 records in RAM. INFO 2026-06-04 21:21:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:43,934,195 INFO 2026-06-04 21:21:00 MarkDuplicates Tracking 1031788 as yet unmatched pairs. 60406 records in RAM. INFO 2026-06-04 21:21:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:47,379,960 INFO 2026-06-04 21:21:02 MarkDuplicates Tracking 1030733 as yet unmatched pairs. 59331 records in RAM. INFO 2026-06-04 21:21:03 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:54,987,585 INFO 2026-06-04 21:21:03 MarkDuplicates Tracking 1029552 as yet unmatched pairs. 58132 records in RAM. INFO 2026-06-04 21:21:05 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:61,868,591 INFO 2026-06-04 21:21:05 MarkDuplicates Tracking 1025600 as yet unmatched pairs. 54162 records in RAM. INFO 2026-06-04 21:21:07 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:69,354,540 INFO 2026-06-04 21:21:07 MarkDuplicates Tracking 1023670 as yet unmatched pairs. 52216 records in RAM. INFO 2026-06-04 21:21:09 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:73,247,782 INFO 2026-06-04 21:21:09 MarkDuplicates Tracking 1021154 as yet unmatched pairs. 49674 records in RAM. INFO 2026-06-04 21:21:10 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:74,872,308 INFO 2026-06-04 21:21:10 MarkDuplicates Tracking 1019291 as yet unmatched pairs. 47789 records in RAM. INFO 2026-06-04 21:21:11 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:86,027,420 INFO 2026-06-04 21:21:11 MarkDuplicates Tracking 1016978 as yet unmatched pairs. 45441 records in RAM. INFO 2026-06-04 21:21:13 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:88,123,066 INFO 2026-06-04 21:21:13 MarkDuplicates Tracking 1028154 as yet unmatched pairs. 56603 records in RAM. INFO 2026-06-04 21:21:14 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,572 INFO 2026-06-04 21:21:14 MarkDuplicates Tracking 1028509 as yet unmatched pairs. 56933 records in RAM. INFO 2026-06-04 21:21:16 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:97,113,811 INFO 2026-06-04 21:21:16 MarkDuplicates Tracking 1012100 as yet unmatched pairs. 40505 records in RAM. INFO 2026-06-04 21:21:17 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:101,262,555 INFO 2026-06-04 21:21:17 MarkDuplicates Tracking 1010777 as yet unmatched pairs. 39144 records in RAM. INFO 2026-06-04 21:21:19 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,599 INFO 2026-06-04 21:21:19 MarkDuplicates Tracking 1010562 as yet unmatched pairs. 38911 records in RAM. INFO 2026-06-04 21:21:20 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:110,563,177 INFO 2026-06-04 21:21:20 MarkDuplicates Tracking 1007835 as yet unmatched pairs. 36178 records in RAM. INFO 2026-06-04 21:21:21 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:117,948,115 INFO 2026-06-04 21:21:21 MarkDuplicates Tracking 1006631 as yet unmatched pairs. 34957 records in RAM. INFO 2026-06-04 21:21:23 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:128,026,196 INFO 2026-06-04 21:21:23 MarkDuplicates Tracking 1004367 as yet unmatched pairs. 32668 records in RAM. INFO 2026-06-04 21:21:25 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:142,954,844 INFO 2026-06-04 21:21:25 MarkDuplicates Tracking 1007030 as yet unmatched pairs. 35304 records in RAM. INFO 2026-06-04 21:21:27 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:159,149,238 INFO 2026-06-04 21:21:27 MarkDuplicates Tracking 1000870 as yet unmatched pairs. 29115 records in RAM. INFO 2026-06-04 21:21:29 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:169,828,015 INFO 2026-06-04 21:21:29 MarkDuplicates Tracking 999510 as yet unmatched pairs. 27722 records in RAM. INFO 2026-06-04 21:21:30 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:175,178,388 INFO 2026-06-04 21:21:30 MarkDuplicates Tracking 1002630 as yet unmatched pairs. 30803 records in RAM. INFO 2026-06-04 21:21:33 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:182,925,545 INFO 2026-06-04 21:21:33 MarkDuplicates Tracking 995470 as yet unmatched pairs. 23622 records in RAM. INFO 2026-06-04 21:21:34 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:189,061,599 INFO 2026-06-04 21:21:34 MarkDuplicates Tracking 993734 as yet unmatched pairs. 21862 records in RAM. INFO 2026-06-04 21:21:36 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:196,872,506 INFO 2026-06-04 21:21:36 MarkDuplicates Tracking 991527 as yet unmatched pairs. 19634 records in RAM. INFO 2026-06-04 21:21:38 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:201,140,356 INFO 2026-06-04 21:21:38 MarkDuplicates Tracking 990686 as yet unmatched pairs. 18776 records in RAM. INFO 2026-06-04 21:21:40 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:206,162,077 INFO 2026-06-04 21:21:40 MarkDuplicates Tracking 990797 as yet unmatched pairs. 18866 records in RAM. INFO 2026-06-04 21:21:41 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,054,610 INFO 2026-06-04 21:21:41 MarkDuplicates Tracking 987732 as yet unmatched pairs. 15777 records in RAM. INFO 2026-06-04 21:21:43 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:216,467,017 INFO 2026-06-04 21:21:43 MarkDuplicates Tracking 984351 as yet unmatched pairs. 12384 records in RAM. INFO 2026-06-04 21:21:44 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:218,818,949 INFO 2026-06-04 21:21:44 MarkDuplicates Tracking 982374 as yet unmatched pairs. 10394 records in RAM. INFO 2026-06-04 21:21:46 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:223,957,634 INFO 2026-06-04 21:21:46 MarkDuplicates Tracking 980616 as yet unmatched pairs. 8579 records in RAM. INFO 2026-06-04 21:21:48 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:230,878,294 INFO 2026-06-04 21:21:48 MarkDuplicates Tracking 981696 as yet unmatched pairs. 9630 records in RAM. INFO 2026-06-04 21:21:49 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:233,448,089 INFO 2026-06-04 21:21:49 MarkDuplicates Tracking 977076 as yet unmatched pairs. 4990 records in RAM. INFO 2026-06-04 21:21:51 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:239,108,062 INFO 2026-06-04 21:21:51 MarkDuplicates Tracking 974793 as yet unmatched pairs. 2676 records in RAM. INFO 2026-06-04 21:21:52 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:241,411,096 INFO 2026-06-04 21:21:52 MarkDuplicates Tracking 973326 as yet unmatched pairs. 1189 records in RAM. INFO 2026-06-04 21:21:54 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr3:9,902,960 INFO 2026-06-04 21:21:54 MarkDuplicates Tracking 971888 as yet unmatched pairs. 60933 records in RAM. INFO 2026-06-04 21:21:56 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:13,317,680 INFO 2026-06-04 21:21:56 MarkDuplicates Tracking 970007 as yet unmatched pairs. 59035 records in RAM. INFO 2026-06-04 21:21:58 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:25,733,955 INFO 2026-06-04 21:21:58 MarkDuplicates Tracking 967754 as yet unmatched pairs. 56749 records in RAM. INFO 2026-06-04 21:21:59 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:36,861,066 INFO 2026-06-04 21:21:59 MarkDuplicates Tracking 965583 as yet unmatched pairs. 54556 records in RAM. INFO 2026-06-04 21:22:01 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,909 INFO 2026-06-04 21:22:01 MarkDuplicates Tracking 969287 as yet unmatched pairs. 58231 records in RAM. INFO 2026-06-04 21:22:02 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:43,576,845 INFO 2026-06-04 21:22:02 MarkDuplicates Tracking 962401 as yet unmatched pairs. 51322 records in RAM. INFO 2026-06-04 21:22:04 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:47,409,073 INFO 2026-06-04 21:22:04 MarkDuplicates Tracking 959664 as yet unmatched pairs. 48557 records in RAM. INFO 2026-06-04 21:22:05 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:48,604,291 INFO 2026-06-04 21:22:05 MarkDuplicates Tracking 958438 as yet unmatched pairs. 47313 records in RAM. INFO 2026-06-04 21:22:07 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:49,162,887 INFO 2026-06-04 21:22:07 MarkDuplicates Tracking 955416 as yet unmatched pairs. 44283 records in RAM. INFO 2026-06-04 21:22:09 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:50,252,124 INFO 2026-06-04 21:22:09 MarkDuplicates Tracking 953935 as yet unmatched pairs. 42788 records in RAM. INFO 2026-06-04 21:22:10 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:52,388,243 INFO 2026-06-04 21:22:10 MarkDuplicates Tracking 951364 as yet unmatched pairs. 40194 records in RAM. INFO 2026-06-04 21:22:12 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:53,235,089 INFO 2026-06-04 21:22:12 MarkDuplicates Tracking 950332 as yet unmatched pairs. 39152 records in RAM. INFO 2026-06-04 21:22:13 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:58,149,869 INFO 2026-06-04 21:22:13 MarkDuplicates Tracking 948768 as yet unmatched pairs. 37571 records in RAM. INFO 2026-06-04 21:22:15 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:71,046,961 INFO 2026-06-04 21:22:15 MarkDuplicates Tracking 946282 as yet unmatched pairs. 35051 records in RAM. INFO 2026-06-04 21:22:17 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:100,823,458 INFO 2026-06-04 21:22:17 MarkDuplicates Tracking 943926 as yet unmatched pairs. 32670 records in RAM. INFO 2026-06-04 21:22:19 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:112,532,694 INFO 2026-06-04 21:22:19 MarkDuplicates Tracking 942867 as yet unmatched pairs. 31580 records in RAM. INFO 2026-06-04 21:22:21 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:121,694,583 INFO 2026-06-04 21:22:21 MarkDuplicates Tracking 940807 as yet unmatched pairs. 29492 records in RAM. INFO 2026-06-04 21:22:23 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:124,922,292 INFO 2026-06-04 21:22:23 MarkDuplicates Tracking 941072 as yet unmatched pairs. 29737 records in RAM. INFO 2026-06-04 21:22:24 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:129,121,301 INFO 2026-06-04 21:22:24 MarkDuplicates Tracking 936997 as yet unmatched pairs. 25642 records in RAM. INFO 2026-06-04 21:22:26 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:133,574,156 INFO 2026-06-04 21:22:26 MarkDuplicates Tracking 934691 as yet unmatched pairs. 23321 records in RAM. INFO 2026-06-04 21:22:28 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:141,925,610 INFO 2026-06-04 21:22:28 MarkDuplicates Tracking 934564 as yet unmatched pairs. 23158 records in RAM. INFO 2026-06-04 21:22:29 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:150,568,201 INFO 2026-06-04 21:22:29 MarkDuplicates Tracking 931651 as yet unmatched pairs. 20206 records in RAM. INFO 2026-06-04 21:22:31 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:168,032,612 INFO 2026-06-04 21:22:31 MarkDuplicates Tracking 929541 as yet unmatched pairs. 18068 records in RAM. INFO 2026-06-04 21:22:33 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:179,401,219 INFO 2026-06-04 21:22:33 MarkDuplicates Tracking 928057 as yet unmatched pairs. 16545 records in RAM. INFO 2026-06-04 21:22:34 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:184,315,835 INFO 2026-06-04 21:22:34 MarkDuplicates Tracking 928168 as yet unmatched pairs. 16628 records in RAM. INFO 2026-06-04 21:22:36 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:187,669,121 INFO 2026-06-04 21:22:36 MarkDuplicates Tracking 923826 as yet unmatched pairs. 12268 records in RAM. INFO 2026-06-04 21:22:37 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:195,568,789 INFO 2026-06-04 21:22:37 MarkDuplicates Tracking 943514 as yet unmatched pairs. 31937 records in RAM. INFO 2026-06-04 21:22:39 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:195,569,088 INFO 2026-06-04 21:22:39 MarkDuplicates Tracking 991986 as yet unmatched pairs. 80388 records in RAM. INFO 2026-06-04 21:22:41 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,579,368 INFO 2026-06-04 21:22:41 MarkDuplicates Tracking 976574 as yet unmatched pairs. 64953 records in RAM. INFO 2026-06-04 21:22:42 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,724,847 INFO 2026-06-04 21:22:42 MarkDuplicates Tracking 921860 as yet unmatched pairs. 10222 records in RAM. INFO 2026-06-04 21:22:43 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:195,759,248 INFO 2026-06-04 21:22:43 MarkDuplicates Tracking 916592 as yet unmatched pairs. 4952 records in RAM. INFO 2026-06-04 21:22:45 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,511 INFO 2026-06-04 21:22:45 MarkDuplicates Tracking 927051 as yet unmatched pairs. 15403 records in RAM. INFO 2026-06-04 21:22:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,368 INFO 2026-06-04 21:22:46 MarkDuplicates Tracking 923293 as yet unmatched pairs. 11637 records in RAM. INFO 2026-06-04 21:22:48 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:196,075,291 INFO 2026-06-04 21:22:48 MarkDuplicates Tracking 913754 as yet unmatched pairs. 2088 records in RAM. INFO 2026-06-04 21:22:49 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:882,030 INFO 2026-06-04 21:22:49 MarkDuplicates Tracking 911442 as yet unmatched pairs. 37305 records in RAM. INFO 2026-06-04 21:22:51 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:2,251,084 INFO 2026-06-04 21:22:51 MarkDuplicates Tracking 909352 as yet unmatched pairs. 35199 records in RAM. INFO 2026-06-04 21:22:53 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:7,004,887 INFO 2026-06-04 21:22:53 MarkDuplicates Tracking 907239 as yet unmatched pairs. 33071 records in RAM. INFO 2026-06-04 21:22:55 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr4:23,795,859 INFO 2026-06-04 21:22:55 MarkDuplicates Tracking 905783 as yet unmatched pairs. 31586 records in RAM. INFO 2026-06-04 21:22:56 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:39,457,597 INFO 2026-06-04 21:22:56 MarkDuplicates Tracking 906089 as yet unmatched pairs. 31858 records in RAM. INFO 2026-06-04 21:22:58 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:44,460,600 INFO 2026-06-04 21:22:58 MarkDuplicates Tracking 901003 as yet unmatched pairs. 26726 records in RAM. INFO 2026-06-04 21:23:00 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr4:54,289,064 INFO 2026-06-04 21:23:00 MarkDuplicates Tracking 901025 as yet unmatched pairs. 26732 records in RAM. INFO 2026-06-04 21:23:02 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:62,770,287 INFO 2026-06-04 21:23:02 MarkDuplicates Tracking 897285 as yet unmatched pairs. 22960 records in RAM. INFO 2026-06-04 21:23:04 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:70,657,237 INFO 2026-06-04 21:23:04 MarkDuplicates Tracking 933546 as yet unmatched pairs. 59189 records in RAM. INFO 2026-06-04 21:23:05 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:73,140,174 INFO 2026-06-04 21:23:05 MarkDuplicates Tracking 894642 as yet unmatched pairs. 20264 records in RAM. INFO 2026-06-04 21:23:07 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:77,056,003 INFO 2026-06-04 21:23:07 MarkDuplicates Tracking 895883 as yet unmatched pairs. 21481 records in RAM. INFO 2026-06-04 21:23:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:84,757,042 INFO 2026-06-04 21:23:08 MarkDuplicates Tracking 890318 as yet unmatched pairs. 15899 records in RAM. INFO 2026-06-04 21:23:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:98,404,490 INFO 2026-06-04 21:23:10 MarkDuplicates Tracking 888546 as yet unmatched pairs. 14093 records in RAM. INFO 2026-06-04 21:23:11 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:105,386,576 INFO 2026-06-04 21:23:11 MarkDuplicates Tracking 888533 as yet unmatched pairs. 14061 records in RAM. INFO 2026-06-04 21:23:13 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:118,815,687 INFO 2026-06-04 21:23:13 MarkDuplicates Tracking 885611 as yet unmatched pairs. 11121 records in RAM. INFO 2026-06-04 21:23:15 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:128,287,386 INFO 2026-06-04 21:23:15 MarkDuplicates Tracking 884817 as yet unmatched pairs. 10320 records in RAM. INFO 2026-06-04 21:23:16 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:145,152,543 INFO 2026-06-04 21:23:16 MarkDuplicates Tracking 881763 as yet unmatched pairs. 7219 records in RAM. INFO 2026-06-04 21:23:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:151,176,908 INFO 2026-06-04 21:23:18 MarkDuplicates Tracking 880417 as yet unmatched pairs. 5845 records in RAM. INFO 2026-06-04 21:23:19 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:165,467,762 INFO 2026-06-04 21:23:19 MarkDuplicates Tracking 878680 as yet unmatched pairs. 4073 records in RAM. INFO 2026-06-04 21:23:21 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:185,264,450 INFO 2026-06-04 21:23:21 MarkDuplicates Tracking 876156 as yet unmatched pairs. 1527 records in RAM. INFO 2026-06-04 21:23:22 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:474,999 INFO 2026-06-04 21:23:22 MarkDuplicates Tracking 878524 as yet unmatched pairs. 57258 records in RAM. INFO 2026-06-04 21:23:24 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:10,208,581 INFO 2026-06-04 21:23:24 MarkDuplicates Tracking 871674 as yet unmatched pairs. 50374 records in RAM. INFO 2026-06-04 21:23:26 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:14,492,593 INFO 2026-06-04 21:23:26 MarkDuplicates Tracking 870165 as yet unmatched pairs. 48844 records in RAM. INFO 2026-06-04 21:23:27 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:36,152,796 INFO 2026-06-04 21:23:27 MarkDuplicates Tracking 868106 as yet unmatched pairs. 46735 records in RAM. INFO 2026-06-04 21:23:29 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:42,801,218 INFO 2026-06-04 21:23:29 MarkDuplicates Tracking 876620 as yet unmatched pairs. 55231 records in RAM. INFO 2026-06-04 21:23:30 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:57,247,191 INFO 2026-06-04 21:23:30 MarkDuplicates Tracking 865144 as yet unmatched pairs. 43728 records in RAM. INFO 2026-06-04 21:23:32 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:69,566,152 INFO 2026-06-04 21:23:32 MarkDuplicates Tracking 862812 as yet unmatched pairs. 41375 records in RAM. INFO 2026-06-04 21:23:33 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:72,199,418 INFO 2026-06-04 21:23:33 MarkDuplicates Tracking 861701 as yet unmatched pairs. 40252 records in RAM. INFO 2026-06-04 21:23:35 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:78,020,757 INFO 2026-06-04 21:23:35 MarkDuplicates Tracking 860537 as yet unmatched pairs. 39065 records in RAM. INFO 2026-06-04 21:23:37 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr5:88,207,092 INFO 2026-06-04 21:23:37 MarkDuplicates Tracking 858413 as yet unmatched pairs. 36933 records in RAM. INFO 2026-06-04 21:23:38 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:96,737,932 INFO 2026-06-04 21:23:38 MarkDuplicates Tracking 857937 as yet unmatched pairs. 36437 records in RAM. INFO 2026-06-04 21:23:40 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:112,838,774 INFO 2026-06-04 21:23:40 MarkDuplicates Tracking 854493 as yet unmatched pairs. 32969 records in RAM. INFO 2026-06-04 21:23:42 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:126,546,386 INFO 2026-06-04 21:23:42 MarkDuplicates Tracking 853069 as yet unmatched pairs. 31515 records in RAM. INFO 2026-06-04 21:23:44 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:132,825,498 INFO 2026-06-04 21:23:44 MarkDuplicates Tracking 851205 as yet unmatched pairs. 29631 records in RAM. INFO 2026-06-04 21:23:45 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,223 INFO 2026-06-04 21:23:45 MarkDuplicates Tracking 851957 as yet unmatched pairs. 30367 records in RAM. INFO 2026-06-04 21:23:47 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:138,933,868 INFO 2026-06-04 21:23:47 MarkDuplicates Tracking 848420 as yet unmatched pairs. 26815 records in RAM. INFO 2026-06-04 21:23:49 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:141,123,464 INFO 2026-06-04 21:23:49 MarkDuplicates Tracking 845233 as yet unmatched pairs. 23580 records in RAM. INFO 2026-06-04 21:23:50 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:141,938,571 INFO 2026-06-04 21:23:50 MarkDuplicates Tracking 843412 as yet unmatched pairs. 21746 records in RAM. INFO 2026-06-04 21:23:52 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:149,978,268 INFO 2026-06-04 21:23:52 MarkDuplicates Tracking 851327 as yet unmatched pairs. 29642 records in RAM. INFO 2026-06-04 21:23:53 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,201 INFO 2026-06-04 21:23:53 MarkDuplicates Tracking 871427 as yet unmatched pairs. 49734 records in RAM. INFO 2026-06-04 21:23:55 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,910 INFO 2026-06-04 21:23:55 MarkDuplicates Tracking 865410 as yet unmatched pairs. 43705 records in RAM. INFO 2026-06-04 21:23:56 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:151,253,193 INFO 2026-06-04 21:23:56 MarkDuplicates Tracking 835636 as yet unmatched pairs. 13925 records in RAM. INFO 2026-06-04 21:23:58 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:159,270,530 INFO 2026-06-04 21:23:58 MarkDuplicates Tracking 833791 as yet unmatched pairs. 12067 records in RAM. INFO 2026-06-04 21:24:00 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,737 INFO 2026-06-04 21:24:00 MarkDuplicates Tracking 842734 as yet unmatched pairs. 20991 records in RAM. INFO 2026-06-04 21:24:01 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:176,575,192 INFO 2026-06-04 21:24:01 MarkDuplicates Tracking 830312 as yet unmatched pairs. 8556 records in RAM. INFO 2026-06-04 21:24:03 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:177,631,859 INFO 2026-06-04 21:24:03 MarkDuplicates Tracking 828230 as yet unmatched pairs. 6455 records in RAM. INFO 2026-06-04 21:24:04 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,253 INFO 2026-06-04 21:24:04 MarkDuplicates Tracking 827009 as yet unmatched pairs. 5224 records in RAM. INFO 2026-06-04 21:24:06 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,699 INFO 2026-06-04 21:24:06 MarkDuplicates Tracking 833532 as yet unmatched pairs. 11740 records in RAM. INFO 2026-06-04 21:24:07 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:181,241,627 INFO 2026-06-04 21:24:07 MarkDuplicates Tracking 824764 as yet unmatched pairs. 2969 records in RAM. INFO 2026-06-04 21:24:10 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,759 INFO 2026-06-04 21:24:10 MarkDuplicates Tracking 821994 as yet unmatched pairs. 53494 records in RAM. INFO 2026-06-04 21:24:11 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:7,862,395 INFO 2026-06-04 21:24:11 MarkDuplicates Tracking 818311 as yet unmatched pairs. 49790 records in RAM. INFO 2026-06-04 21:24:14 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:17,787,776 INFO 2026-06-04 21:24:14 MarkDuplicates Tracking 816568 as yet unmatched pairs. 48027 records in RAM. INFO 2026-06-04 21:24:16 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,379 INFO 2026-06-04 21:24:16 MarkDuplicates Tracking 815709 as yet unmatched pairs. 47132 records in RAM. INFO 2026-06-04 21:24:17 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:27,824,328 INFO 2026-06-04 21:24:17 MarkDuplicates Tracking 812965 as yet unmatched pairs. 44372 records in RAM. INFO 2026-06-04 21:24:19 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:30,490,467 INFO 2026-06-04 21:24:19 MarkDuplicates Tracking 811680 as yet unmatched pairs. 43072 records in RAM. INFO 2026-06-04 21:24:20 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:31,354,243 INFO 2026-06-04 21:24:20 MarkDuplicates Tracking 815562 as yet unmatched pairs. 46938 records in RAM. INFO 2026-06-04 21:24:22 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:31,727,646 INFO 2026-06-04 21:24:22 MarkDuplicates Tracking 808211 as yet unmatched pairs. 39572 records in RAM. INFO 2026-06-04 21:24:23 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,102 INFO 2026-06-04 21:24:23 MarkDuplicates Tracking 809509 as yet unmatched pairs. 40856 records in RAM. INFO 2026-06-04 21:24:24 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:32,073,755 INFO 2026-06-04 21:24:24 MarkDuplicates Tracking 804699 as yet unmatched pairs. 36035 records in RAM. INFO 2026-06-04 21:24:26 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:32,980,103 INFO 2026-06-04 21:24:26 MarkDuplicates Tracking 803096 as yet unmatched pairs. 34419 records in RAM. INFO 2026-06-04 21:24:27 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,310 INFO 2026-06-04 21:24:27 MarkDuplicates Tracking 802231 as yet unmatched pairs. 33536 records in RAM. INFO 2026-06-04 21:24:29 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,326 INFO 2026-06-04 21:24:29 MarkDuplicates Tracking 801550 as yet unmatched pairs. 32831 records in RAM. INFO 2026-06-04 21:24:30 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:41,936,581 INFO 2026-06-04 21:24:30 MarkDuplicates Tracking 797023 as yet unmatched pairs. 28278 records in RAM. INFO 2026-06-04 21:24:32 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:43,603,915 INFO 2026-06-04 21:24:32 MarkDuplicates Tracking 794737 as yet unmatched pairs. 25978 records in RAM. INFO 2026-06-04 21:24:34 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:47,606,246 INFO 2026-06-04 21:24:34 MarkDuplicates Tracking 794036 as yet unmatched pairs. 25259 records in RAM. INFO 2026-06-04 21:24:35 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:56,553,322 INFO 2026-06-04 21:24:35 MarkDuplicates Tracking 791939 as yet unmatched pairs. 23103 records in RAM. INFO 2026-06-04 21:24:37 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,894 INFO 2026-06-04 21:24:37 MarkDuplicates Tracking 791680 as yet unmatched pairs. 22818 records in RAM. INFO 2026-06-04 21:24:39 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:85,487,447 INFO 2026-06-04 21:24:39 MarkDuplicates Tracking 787560 as yet unmatched pairs. 18683 records in RAM. INFO 2026-06-04 21:24:42 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr6:99,408,202 INFO 2026-06-04 21:24:42 MarkDuplicates Tracking 786148 as yet unmatched pairs. 17250 records in RAM. INFO 2026-06-04 21:24:43 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:108,212,103 INFO 2026-06-04 21:24:43 MarkDuplicates Tracking 784493 as yet unmatched pairs. 15577 records in RAM. INFO 2026-06-04 21:24:45 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,598 INFO 2026-06-04 21:24:45 MarkDuplicates Tracking 782172 as yet unmatched pairs. 13232 records in RAM. INFO 2026-06-04 21:24:46 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:129,710,074 INFO 2026-06-04 21:24:46 MarkDuplicates Tracking 780033 as yet unmatched pairs. 11067 records in RAM. INFO 2026-06-04 21:24:48 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:137,002,039 INFO 2026-06-04 21:24:48 MarkDuplicates Tracking 778414 as yet unmatched pairs. 9437 records in RAM. INFO 2026-06-04 21:24:49 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:143,470,965 INFO 2026-06-04 21:24:49 MarkDuplicates Tracking 776745 as yet unmatched pairs. 7753 records in RAM. INFO 2026-06-04 21:24:51 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:152,754,231 INFO 2026-06-04 21:24:51 MarkDuplicates Tracking 774888 as yet unmatched pairs. 5876 records in RAM. INFO 2026-06-04 21:24:52 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:158,771,254 INFO 2026-06-04 21:24:52 MarkDuplicates Tracking 776300 as yet unmatched pairs. 7264 records in RAM. INFO 2026-06-04 21:24:54 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:163,415,177 INFO 2026-06-04 21:24:54 MarkDuplicates Tracking 771280 as yet unmatched pairs. 2215 records in RAM. INFO 2026-06-04 21:24:56 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr7:898,750 INFO 2026-06-04 21:24:56 MarkDuplicates Tracking 769255 as yet unmatched pairs. 60192 records in RAM. INFO 2026-06-04 21:24:57 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,374,281 INFO 2026-06-04 21:24:57 MarkDuplicates Tracking 767629 as yet unmatched pairs. 58549 records in RAM. INFO 2026-06-04 21:24:59 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,391 INFO 2026-06-04 21:24:59 MarkDuplicates Tracking 771530 as yet unmatched pairs. 62427 records in RAM. INFO 2026-06-04 21:25:00 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:16,704,557 INFO 2026-06-04 21:25:00 MarkDuplicates Tracking 763294 as yet unmatched pairs. 54170 records in RAM. INFO 2026-06-04 21:25:03 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr7:27,145,883 INFO 2026-06-04 21:25:03 MarkDuplicates Tracking 760812 as yet unmatched pairs. 51660 records in RAM. INFO 2026-06-04 21:25:04 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:40,449,317 INFO 2026-06-04 21:25:04 MarkDuplicates Tracking 758816 as yet unmatched pairs. 49633 records in RAM. INFO 2026-06-04 21:25:06 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:44,885,179 INFO 2026-06-04 21:25:06 MarkDuplicates Tracking 756911 as yet unmatched pairs. 47714 records in RAM. INFO 2026-06-04 21:25:08 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr7:63,894,556 INFO 2026-06-04 21:25:08 MarkDuplicates Tracking 754813 as yet unmatched pairs. 45584 records in RAM. INFO 2026-06-04 21:25:10 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,614 INFO 2026-06-04 21:25:10 MarkDuplicates Tracking 753706 as yet unmatched pairs. 44452 records in RAM. INFO 2026-06-04 21:25:11 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:75,134,999 INFO 2026-06-04 21:25:11 MarkDuplicates Tracking 751803 as yet unmatched pairs. 42531 records in RAM. INFO 2026-06-04 21:25:13 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,821 INFO 2026-06-04 21:25:13 MarkDuplicates Tracking 758304 as yet unmatched pairs. 49019 records in RAM. INFO 2026-06-04 21:25:14 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:88,206,394 INFO 2026-06-04 21:25:14 MarkDuplicates Tracking 752167 as yet unmatched pairs. 42862 records in RAM. INFO 2026-06-04 21:25:16 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:92,084,824 INFO 2026-06-04 21:25:16 MarkDuplicates Tracking 749264 as yet unmatched pairs. 39941 records in RAM. INFO 2026-06-04 21:25:17 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:94,424,420 INFO 2026-06-04 21:25:17 MarkDuplicates Tracking 746428 as yet unmatched pairs. 37090 records in RAM. INFO 2026-06-04 21:25:19 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:99,008,496 INFO 2026-06-04 21:25:19 MarkDuplicates Tracking 743226 as yet unmatched pairs. 33873 records in RAM. INFO 2026-06-04 21:25:20 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,154,015 INFO 2026-06-04 21:25:20 MarkDuplicates Tracking 741521 as yet unmatched pairs. 32162 records in RAM. INFO 2026-06-04 21:25:22 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,990,913 INFO 2026-06-04 21:25:22 MarkDuplicates Tracking 741076 as yet unmatched pairs. 31697 records in RAM. INFO 2026-06-04 21:25:23 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,352 INFO 2026-06-04 21:25:23 MarkDuplicates Tracking 744165 as yet unmatched pairs. 34786 records in RAM. INFO 2026-06-04 21:25:24 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,320 INFO 2026-06-04 21:25:24 MarkDuplicates Tracking 742194 as yet unmatched pairs. 32814 records in RAM. INFO 2026-06-04 21:25:25 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,224 INFO 2026-06-04 21:25:25 MarkDuplicates Tracking 741640 as yet unmatched pairs. 32260 records in RAM. INFO 2026-06-04 21:25:26 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,315 INFO 2026-06-04 21:25:26 MarkDuplicates Tracking 745346 as yet unmatched pairs. 35966 records in RAM. INFO 2026-06-04 21:25:28 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,865 INFO 2026-06-04 21:25:28 MarkDuplicates Tracking 763324 as yet unmatched pairs. 53940 records in RAM. INFO 2026-06-04 21:25:29 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,500 INFO 2026-06-04 21:25:29 MarkDuplicates Tracking 752699 as yet unmatched pairs. 43309 records in RAM. INFO 2026-06-04 21:25:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,330 INFO 2026-06-04 21:25:30 MarkDuplicates Tracking 737527 as yet unmatched pairs. 28136 records in RAM. INFO 2026-06-04 21:25:31 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,893 INFO 2026-06-04 21:25:31 MarkDuplicates Tracking 737107 as yet unmatched pairs. 27715 records in RAM. INFO 2026-06-04 21:25:33 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,628 INFO 2026-06-04 21:25:33 MarkDuplicates Tracking 752982 as yet unmatched pairs. 43590 records in RAM. INFO 2026-06-04 21:25:34 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,412 INFO 2026-06-04 21:25:34 MarkDuplicates Tracking 751054 as yet unmatched pairs. 41660 records in RAM. INFO 2026-06-04 21:25:36 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,074 INFO 2026-06-04 21:25:36 MarkDuplicates Tracking 742000 as yet unmatched pairs. 32593 records in RAM. INFO 2026-06-04 21:25:37 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,743 INFO 2026-06-04 21:25:37 MarkDuplicates Tracking 735240 as yet unmatched pairs. 25831 records in RAM. INFO 2026-06-04 21:25:38 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,918 INFO 2026-06-04 21:25:38 MarkDuplicates Tracking 747027 as yet unmatched pairs. 37614 records in RAM. INFO 2026-06-04 21:25:41 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:101,005,222 INFO 2026-06-04 21:25:41 MarkDuplicates Tracking 732676 as yet unmatched pairs. 23261 records in RAM. INFO 2026-06-04 21:25:42 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,233 INFO 2026-06-04 21:25:42 MarkDuplicates Tracking 729430 as yet unmatched pairs. 20006 records in RAM. INFO 2026-06-04 21:26:38 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 55s. Last read position: chr7:107,765,849 INFO 2026-06-04 21:26:38 MarkDuplicates Tracking 739208 as yet unmatched pairs. 29755 records in RAM. INFO 2026-06-04 21:26:40 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr7:107,791,226 INFO 2026-06-04 21:26:40 MarkDuplicates Tracking 734973 as yet unmatched pairs. 25512 records in RAM. INFO 2026-06-04 21:26:42 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr7:121,097,729 INFO 2026-06-04 21:26:42 MarkDuplicates Tracking 723675 as yet unmatched pairs. 14200 records in RAM. INFO 2026-06-04 21:26:44 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:128,085,710 INFO 2026-06-04 21:26:44 MarkDuplicates Tracking 725531 as yet unmatched pairs. 16048 records in RAM. INFO 2026-06-04 21:26:45 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:134,947,489 INFO 2026-06-04 21:26:45 MarkDuplicates Tracking 719808 as yet unmatched pairs. 10300 records in RAM. INFO 2026-06-04 21:26:47 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:139,777,639 INFO 2026-06-04 21:26:47 MarkDuplicates Tracking 718057 as yet unmatched pairs. 8532 records in RAM. INFO 2026-06-04 21:26:49 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:143,139,552 INFO 2026-06-04 21:26:49 MarkDuplicates Tracking 729005 as yet unmatched pairs. 19470 records in RAM. INFO 2026-06-04 21:26:50 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:149,005,241 INFO 2026-06-04 21:26:50 MarkDuplicates Tracking 716014 as yet unmatched pairs. 6470 records in RAM. INFO 2026-06-04 21:26:52 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:151,064,274 INFO 2026-06-04 21:26:52 MarkDuplicates Tracking 712491 as yet unmatched pairs. 2931 records in RAM. INFO 2026-06-04 21:26:54 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr7:155,745,323 INFO 2026-06-04 21:26:54 MarkDuplicates Tracking 710860 as yet unmatched pairs. 1283 records in RAM. INFO 2026-06-04 21:26:56 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:11,838,483 INFO 2026-06-04 21:26:56 MarkDuplicates Tracking 709674 as yet unmatched pairs. 48168 records in RAM. INFO 2026-06-04 21:26:58 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:18,575,242 INFO 2026-06-04 21:26:58 MarkDuplicates Tracking 706612 as yet unmatched pairs. 45092 records in RAM. INFO 2026-06-04 21:26:59 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:23,154,920 INFO 2026-06-04 21:26:59 MarkDuplicates Tracking 704462 as yet unmatched pairs. 42934 records in RAM. INFO 2026-06-04 21:27:01 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:27,598,522 INFO 2026-06-04 21:27:01 MarkDuplicates Tracking 705451 as yet unmatched pairs. 43911 records in RAM. INFO 2026-06-04 21:27:02 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:30,614,627 INFO 2026-06-04 21:27:02 MarkDuplicates Tracking 700756 as yet unmatched pairs. 39200 records in RAM. INFO 2026-06-04 21:27:04 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:38,268,401 INFO 2026-06-04 21:27:04 MarkDuplicates Tracking 699331 as yet unmatched pairs. 37756 records in RAM. INFO 2026-06-04 21:27:05 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:42,178,968 INFO 2026-06-04 21:27:05 MarkDuplicates Tracking 697067 as yet unmatched pairs. 35486 records in RAM. INFO 2026-06-04 21:27:06 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:51,860,995 INFO 2026-06-04 21:27:06 MarkDuplicates Tracking 697288 as yet unmatched pairs. 35695 records in RAM. INFO 2026-06-04 21:27:08 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:61,681,027 INFO 2026-06-04 21:27:08 MarkDuplicates Tracking 694902 as yet unmatched pairs. 33287 records in RAM. INFO 2026-06-04 21:27:10 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:70,583,729 INFO 2026-06-04 21:27:10 MarkDuplicates Tracking 694276 as yet unmatched pairs. 32632 records in RAM. INFO 2026-06-04 21:27:11 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:85,214,592 INFO 2026-06-04 21:27:11 MarkDuplicates Tracking 692113 as yet unmatched pairs. 30444 records in RAM. INFO 2026-06-04 21:27:13 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:89,980,836 INFO 2026-06-04 21:27:13 MarkDuplicates Tracking 688765 as yet unmatched pairs. 27083 records in RAM. INFO 2026-06-04 21:27:15 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:96,231,776 INFO 2026-06-04 21:27:15 MarkDuplicates Tracking 688015 as yet unmatched pairs. 26321 records in RAM. INFO 2026-06-04 21:27:16 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,337 INFO 2026-06-04 21:27:16 MarkDuplicates Tracking 703094 as yet unmatched pairs. 41382 records in RAM. INFO 2026-06-04 21:27:17 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,425 INFO 2026-06-04 21:27:17 MarkDuplicates Tracking 692219 as yet unmatched pairs. 30500 records in RAM. INFO 2026-06-04 21:27:20 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr8:108,217,376 INFO 2026-06-04 21:27:20 MarkDuplicates Tracking 682636 as yet unmatched pairs. 20903 records in RAM. INFO 2026-06-04 21:27:21 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:123,253,713 INFO 2026-06-04 21:27:21 MarkDuplicates Tracking 679306 as yet unmatched pairs. 17557 records in RAM. INFO 2026-06-04 21:27:23 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:133,250,520 INFO 2026-06-04 21:27:23 MarkDuplicates Tracking 679722 as yet unmatched pairs. 17937 records in RAM. INFO 2026-06-04 21:27:25 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,598,254 INFO 2026-06-04 21:27:25 MarkDuplicates Tracking 674999 as yet unmatched pairs. 13190 records in RAM. INFO 2026-06-04 21:27:26 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,511 INFO 2026-06-04 21:27:26 MarkDuplicates Tracking 673923 as yet unmatched pairs. 12101 records in RAM. INFO 2026-06-04 21:27:28 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,316 INFO 2026-06-04 21:27:28 MarkDuplicates Tracking 677503 as yet unmatched pairs. 15678 records in RAM. INFO 2026-06-04 21:27:29 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 0s. Last read position: chr8:143,861,627 INFO 2026-06-04 21:27:29 MarkDuplicates Tracking 673591 as yet unmatched pairs. 11765 records in RAM. INFO 2026-06-04 21:27:30 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,076 INFO 2026-06-04 21:27:30 MarkDuplicates Tracking 677438 as yet unmatched pairs. 15611 records in RAM. INFO 2026-06-04 21:27:31 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,697 INFO 2026-06-04 21:27:31 MarkDuplicates Tracking 673583 as yet unmatched pairs. 11755 records in RAM. INFO 2026-06-04 21:27:32 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,207 INFO 2026-06-04 21:27:32 MarkDuplicates Tracking 670154 as yet unmatched pairs. 8324 records in RAM. INFO 2026-06-04 21:27:33 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,665 INFO 2026-06-04 21:27:33 MarkDuplicates Tracking 673155 as yet unmatched pairs. 11313 records in RAM. INFO 2026-06-04 21:27:34 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,983,454 INFO 2026-06-04 21:27:34 MarkDuplicates Tracking 666729 as yet unmatched pairs. 4872 records in RAM. INFO 2026-06-04 21:27:36 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:144,399,184 INFO 2026-06-04 21:27:36 MarkDuplicates Tracking 664079 as yet unmatched pairs. 2217 records in RAM. INFO 2026-06-04 21:27:38 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:712,741 INFO 2026-06-04 21:27:38 MarkDuplicates Tracking 662300 as yet unmatched pairs. 40641 records in RAM. INFO 2026-06-04 21:27:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:14,120,579 INFO 2026-06-04 21:27:39 MarkDuplicates Tracking 662763 as yet unmatched pairs. 41046 records in RAM. INFO 2026-06-04 21:27:41 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:26,910,362 INFO 2026-06-04 21:27:41 MarkDuplicates Tracking 658000 as yet unmatched pairs. 36270 records in RAM. INFO 2026-06-04 21:27:43 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:34,637,472 INFO 2026-06-04 21:27:43 MarkDuplicates Tracking 656250 as yet unmatched pairs. 34504 records in RAM. INFO 2026-06-04 21:27:44 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:35,752,745 INFO 2026-06-04 21:27:44 MarkDuplicates Tracking 653910 as yet unmatched pairs. 32154 records in RAM. INFO 2026-06-04 21:27:46 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:69,251,186 INFO 2026-06-04 21:27:46 MarkDuplicates Tracking 652779 as yet unmatched pairs. 30990 records in RAM. INFO 2026-06-04 21:27:48 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr9:81,611,829 INFO 2026-06-04 21:27:48 MarkDuplicates Tracking 650675 as yet unmatched pairs. 28876 records in RAM. INFO 2026-06-04 21:27:50 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr9:91,361,656 INFO 2026-06-04 21:27:50 MarkDuplicates Tracking 649562 as yet unmatched pairs. 27736 records in RAM. INFO 2026-06-04 21:27:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:95,458,143 INFO 2026-06-04 21:27:52 MarkDuplicates Tracking 646811 as yet unmatched pairs. 24958 records in RAM. INFO 2026-06-04 21:27:53 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:104,752,965 INFO 2026-06-04 21:27:53 MarkDuplicates Tracking 645086 as yet unmatched pairs. 23225 records in RAM. INFO 2026-06-04 21:27:55 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,801 INFO 2026-06-04 21:27:55 MarkDuplicates Tracking 650678 as yet unmatched pairs. 28797 records in RAM. INFO 2026-06-04 21:27:56 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:114,376,942 INFO 2026-06-04 21:27:56 MarkDuplicates Tracking 641550 as yet unmatched pairs. 19656 records in RAM. INFO 2026-06-04 21:27:58 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:122,986,297 INFO 2026-06-04 21:27:58 MarkDuplicates Tracking 639579 as yet unmatched pairs. 17663 records in RAM. INFO 2026-06-04 21:28:00 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:127,451,285 INFO 2026-06-04 21:28:00 MarkDuplicates Tracking 636805 as yet unmatched pairs. 14862 records in RAM. INFO 2026-06-04 21:28:01 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:128,578,226 INFO 2026-06-04 21:28:01 MarkDuplicates Tracking 635235 as yet unmatched pairs. 13282 records in RAM. INFO 2026-06-04 21:28:03 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:129,994,938 INFO 2026-06-04 21:28:03 MarkDuplicates Tracking 632996 as yet unmatched pairs. 11034 records in RAM. INFO 2026-06-04 21:28:04 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:131,621,897 INFO 2026-06-04 21:28:04 MarkDuplicates Tracking 630999 as yet unmatched pairs. 9026 records in RAM. INFO 2026-06-04 21:28:06 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:134,048,422 INFO 2026-06-04 21:28:06 MarkDuplicates Tracking 629653 as yet unmatched pairs. 7658 records in RAM. INFO 2026-06-04 21:28:07 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:136,505,785 INFO 2026-06-04 21:28:07 MarkDuplicates Tracking 627390 as yet unmatched pairs. 5380 records in RAM. INFO 2026-06-04 21:28:09 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:137,053,881 INFO 2026-06-04 21:28:09 MarkDuplicates Tracking 624709 as yet unmatched pairs. 2685 records in RAM. INFO 2026-06-04 21:28:11 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr9:137,728,379 INFO 2026-06-04 21:28:11 MarkDuplicates Tracking 622555 as yet unmatched pairs. 519 records in RAM. INFO 2026-06-04 21:28:13 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr10:5,917,649 INFO 2026-06-04 21:28:13 MarkDuplicates Tracking 620860 as yet unmatched pairs. 35262 records in RAM. INFO 2026-06-04 21:28:15 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:17,796,270 INFO 2026-06-04 21:28:15 MarkDuplicates Tracking 619164 as yet unmatched pairs. 33559 records in RAM. INFO 2026-06-04 21:28:17 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr10:29,480,537 INFO 2026-06-04 21:28:17 MarkDuplicates Tracking 617056 as yet unmatched pairs. 31433 records in RAM. INFO 2026-06-04 21:28:19 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:32,926,010 INFO 2026-06-04 21:28:19 MarkDuplicates Tracking 615669 as yet unmatched pairs. 30038 records in RAM. INFO 2026-06-04 21:28:20 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:45,738,044 INFO 2026-06-04 21:28:20 MarkDuplicates Tracking 613418 as yet unmatched pairs. 27762 records in RAM. INFO 2026-06-04 21:28:21 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:50,095,683 INFO 2026-06-04 21:28:21 MarkDuplicates Tracking 612131 as yet unmatched pairs. 26473 records in RAM. INFO 2026-06-04 21:28:23 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:68,379,343 INFO 2026-06-04 21:28:23 MarkDuplicates Tracking 610308 as yet unmatched pairs. 24621 records in RAM. INFO 2026-06-04 21:28:25 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:73,134,687 INFO 2026-06-04 21:28:25 MarkDuplicates Tracking 608369 as yet unmatched pairs. 22663 records in RAM. INFO 2026-06-04 21:28:26 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:77,821,214 INFO 2026-06-04 21:28:26 MarkDuplicates Tracking 606290 as yet unmatched pairs. 20560 records in RAM. INFO 2026-06-04 21:28:28 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:86,471,004 INFO 2026-06-04 21:28:28 MarkDuplicates Tracking 604970 as yet unmatched pairs. 19228 records in RAM. INFO 2026-06-04 21:28:29 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:88,913,213 INFO 2026-06-04 21:28:29 MarkDuplicates Tracking 602776 as yet unmatched pairs. 17022 records in RAM. INFO 2026-06-04 21:28:30 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:95,264,026 INFO 2026-06-04 21:28:30 MarkDuplicates Tracking 602707 as yet unmatched pairs. 16937 records in RAM. INFO 2026-06-04 21:28:32 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:97,452,215 INFO 2026-06-04 21:28:32 MarkDuplicates Tracking 598980 as yet unmatched pairs. 13196 records in RAM. INFO 2026-06-04 21:28:34 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:100,984,012 INFO 2026-06-04 21:28:34 MarkDuplicates Tracking 597614 as yet unmatched pairs. 11812 records in RAM. INFO 2026-06-04 21:28:35 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:103,392,371 INFO 2026-06-04 21:28:35 MarkDuplicates Tracking 595537 as yet unmatched pairs. 9720 records in RAM. INFO 2026-06-04 21:28:37 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:112,410,469 INFO 2026-06-04 21:28:37 MarkDuplicates Tracking 594261 as yet unmatched pairs. 8427 records in RAM. INFO 2026-06-04 21:28:39 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:119,072,890 INFO 2026-06-04 21:28:39 MarkDuplicates Tracking 592209 as yet unmatched pairs. 6360 records in RAM. INFO 2026-06-04 21:28:41 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr10:122,586,062 INFO 2026-06-04 21:28:41 MarkDuplicates Tracking 590561 as yet unmatched pairs. 4702 records in RAM. INFO 2026-06-04 21:28:42 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:124,981,732 INFO 2026-06-04 21:28:42 MarkDuplicates Tracking 587967 as yet unmatched pairs. 2102 records in RAM. INFO 2026-06-04 21:28:44 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr11:211,294 INFO 2026-06-04 21:28:44 MarkDuplicates Tracking 586421 as yet unmatched pairs. 71309 records in RAM. INFO 2026-06-04 21:28:46 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:619,314 INFO 2026-06-04 21:28:46 MarkDuplicates Tracking 585653 as yet unmatched pairs. 70534 records in RAM. INFO 2026-06-04 21:28:48 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:984,645 INFO 2026-06-04 21:28:48 MarkDuplicates Tracking 582101 as yet unmatched pairs. 66964 records in RAM. INFO 2026-06-04 21:28:49 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:1,085,308 INFO 2026-06-04 21:28:49 MarkDuplicates Tracking 583582 as yet unmatched pairs. 68444 records in RAM. INFO 2026-06-04 21:28:51 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,620 INFO 2026-06-04 21:28:51 MarkDuplicates Tracking 578954 as yet unmatched pairs. 63798 records in RAM. INFO 2026-06-04 21:28:52 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,173 INFO 2026-06-04 21:28:52 MarkDuplicates Tracking 577668 as yet unmatched pairs. 62509 records in RAM. INFO 2026-06-04 21:28:54 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,508 INFO 2026-06-04 21:28:54 MarkDuplicates Tracking 579986 as yet unmatched pairs. 64815 records in RAM. INFO 2026-06-04 21:28:55 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:4,070,078 INFO 2026-06-04 21:28:55 MarkDuplicates Tracking 573321 as yet unmatched pairs. 58143 records in RAM. INFO 2026-06-04 21:28:57 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,883 INFO 2026-06-04 21:28:57 MarkDuplicates Tracking 572061 as yet unmatched pairs. 56876 records in RAM. INFO 2026-06-04 21:28:58 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:12,213,324 INFO 2026-06-04 21:28:58 MarkDuplicates Tracking 569486 as yet unmatched pairs. 54285 records in RAM. INFO 2026-06-04 21:29:00 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:18,341,537 INFO 2026-06-04 21:29:00 MarkDuplicates Tracking 567621 as yet unmatched pairs. 52408 records in RAM. INFO 2026-06-04 21:29:01 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:34,052,381 INFO 2026-06-04 21:29:01 MarkDuplicates Tracking 566745 as yet unmatched pairs. 51517 records in RAM. INFO 2026-06-04 21:29:03 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:43,901,566 INFO 2026-06-04 21:29:03 MarkDuplicates Tracking 563964 as yet unmatched pairs. 48717 records in RAM. INFO 2026-06-04 21:29:05 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:47,173,435 INFO 2026-06-04 21:29:05 MarkDuplicates Tracking 562564 as yet unmatched pairs. 47311 records in RAM. INFO 2026-06-04 21:29:06 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:57,688,574 INFO 2026-06-04 21:29:06 MarkDuplicates Tracking 560451 as yet unmatched pairs. 45189 records in RAM. INFO 2026-06-04 21:29:08 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:59,211,236 INFO 2026-06-04 21:29:08 MarkDuplicates Tracking 558292 as yet unmatched pairs. 43020 records in RAM. INFO 2026-06-04 21:29:10 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:61,542,482 INFO 2026-06-04 21:29:10 MarkDuplicates Tracking 556293 as yet unmatched pairs. 41014 records in RAM. INFO 2026-06-04 21:29:12 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,161 INFO 2026-06-04 21:29:12 MarkDuplicates Tracking 556467 as yet unmatched pairs. 41178 records in RAM. INFO 2026-06-04 21:29:13 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,043 INFO 2026-06-04 21:29:13 MarkDuplicates Tracking 554819 as yet unmatched pairs. 39523 records in RAM. INFO 2026-06-04 21:29:15 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,690,463 INFO 2026-06-04 21:29:15 MarkDuplicates Tracking 551600 as yet unmatched pairs. 36297 records in RAM. INFO 2026-06-04 21:29:17 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:64,211,305 INFO 2026-06-04 21:29:17 MarkDuplicates Tracking 548949 as yet unmatched pairs. 33634 records in RAM. INFO 2026-06-04 21:29:18 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:64,840,582 INFO 2026-06-04 21:29:18 MarkDuplicates Tracking 546945 as yet unmatched pairs. 31623 records in RAM. INFO 2026-06-04 21:29:20 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,573,638 INFO 2026-06-04 21:29:20 MarkDuplicates Tracking 544507 as yet unmatched pairs. 29105 records in RAM. INFO 2026-06-04 21:29:21 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:66,059,974 INFO 2026-06-04 21:29:21 MarkDuplicates Tracking 542867 as yet unmatched pairs. 27448 records in RAM. INFO 2026-06-04 21:29:23 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,281,463 INFO 2026-06-04 21:29:23 MarkDuplicates Tracking 541100 as yet unmatched pairs. 25677 records in RAM. INFO 2026-06-04 21:29:24 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,095 INFO 2026-06-04 21:29:24 MarkDuplicates Tracking 539120 as yet unmatched pairs. 23691 records in RAM. INFO 2026-06-04 21:29:26 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:70,473,247 INFO 2026-06-04 21:29:26 MarkDuplicates Tracking 536120 as yet unmatched pairs. 20677 records in RAM. INFO 2026-06-04 21:29:27 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:72,814,420 INFO 2026-06-04 21:29:27 MarkDuplicates Tracking 534083 as yet unmatched pairs. 18629 records in RAM. INFO 2026-06-04 21:29:29 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:76,526,504 INFO 2026-06-04 21:29:29 MarkDuplicates Tracking 532236 as yet unmatched pairs. 16775 records in RAM. INFO 2026-06-04 21:29:30 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:85,726,718 INFO 2026-06-04 21:29:30 MarkDuplicates Tracking 530982 as yet unmatched pairs. 15509 records in RAM. INFO 2026-06-04 21:29:32 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,995 INFO 2026-06-04 21:29:32 MarkDuplicates Tracking 529547 as yet unmatched pairs. 14056 records in RAM. INFO 2026-06-04 21:29:34 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:111,723,712 INFO 2026-06-04 21:29:34 MarkDuplicates Tracking 526658 as yet unmatched pairs. 11158 records in RAM. INFO 2026-06-04 21:29:36 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:117,408,981 INFO 2026-06-04 21:29:36 MarkDuplicates Tracking 524755 as yet unmatched pairs. 9247 records in RAM. INFO 2026-06-04 21:29:38 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr11:118,901,922 INFO 2026-06-04 21:29:38 MarkDuplicates Tracking 522909 as yet unmatched pairs. 7392 records in RAM. INFO 2026-06-04 21:29:40 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:121,586,317 INFO 2026-06-04 21:29:40 MarkDuplicates Tracking 521732 as yet unmatched pairs. 6207 records in RAM. INFO 2026-06-04 21:29:42 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:125,085,651 INFO 2026-06-04 21:29:42 MarkDuplicates Tracking 519632 as yet unmatched pairs. 4105 records in RAM. INFO 2026-06-04 21:29:44 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:130,121,634 INFO 2026-06-04 21:29:44 MarkDuplicates Tracking 517807 as yet unmatched pairs. 2271 records in RAM. INFO 2026-06-04 21:29:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr12:827,194 INFO 2026-06-04 21:29:46 MarkDuplicates Tracking 515661 as yet unmatched pairs. 64883 records in RAM. INFO 2026-06-04 21:29:47 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:6,235,255 INFO 2026-06-04 21:29:47 MarkDuplicates Tracking 516759 as yet unmatched pairs. 65969 records in RAM. INFO 2026-06-04 21:29:49 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,176 INFO 2026-06-04 21:29:49 MarkDuplicates Tracking 511970 as yet unmatched pairs. 61169 records in RAM. INFO 2026-06-04 21:29:51 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:8,090,196 INFO 2026-06-04 21:29:51 MarkDuplicates Tracking 509669 as yet unmatched pairs. 58860 records in RAM. INFO 2026-06-04 21:29:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:12,500,585 INFO 2026-06-04 21:29:52 MarkDuplicates Tracking 508381 as yet unmatched pairs. 57558 records in RAM. INFO 2026-06-04 21:29:54 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:22,482,557 INFO 2026-06-04 21:29:54 MarkDuplicates Tracking 506381 as yet unmatched pairs. 55547 records in RAM. INFO 2026-06-04 21:29:55 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:38,316,943 INFO 2026-06-04 21:29:55 MarkDuplicates Tracking 504151 as yet unmatched pairs. 53304 records in RAM. INFO 2026-06-04 21:29:57 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:47,681,767 INFO 2026-06-04 21:29:57 MarkDuplicates Tracking 502344 as yet unmatched pairs. 51483 records in RAM. INFO 2026-06-04 21:29:58 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,439 INFO 2026-06-04 21:29:58 MarkDuplicates Tracking 500802 as yet unmatched pairs. 49928 records in RAM. INFO 2026-06-04 21:30:00 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:49,796,399 INFO 2026-06-04 21:30:00 MarkDuplicates Tracking 498686 as yet unmatched pairs. 47799 records in RAM. INFO 2026-06-04 21:30:01 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:52,237,520 INFO 2026-06-04 21:30:01 MarkDuplicates Tracking 498073 as yet unmatched pairs. 47180 records in RAM. INFO 2026-06-04 21:30:03 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,037,524 INFO 2026-06-04 21:30:03 MarkDuplicates Tracking 497001 as yet unmatched pairs. 46096 records in RAM. INFO 2026-06-04 21:30:04 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,219 INFO 2026-06-04 21:30:04 MarkDuplicates Tracking 497850 as yet unmatched pairs. 46934 records in RAM. INFO 2026-06-04 21:30:06 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:54,854,545 INFO 2026-06-04 21:30:06 MarkDuplicates Tracking 595890 as yet unmatched pairs. 144958 records in RAM. INFO 2026-06-04 21:30:07 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:54,854,626 INFO 2026-06-04 21:30:07 MarkDuplicates Tracking 654970 as yet unmatched pairs. 204020 records in RAM. INFO 2026-06-04 21:30:09 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:54,856,792 INFO 2026-06-04 21:30:09 MarkDuplicates Tracking 691100 as yet unmatched pairs. 240138 records in RAM. INFO 2026-06-04 21:30:11 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:54,856,883 INFO 2026-06-04 21:30:11 MarkDuplicates Tracking 638373 as yet unmatched pairs. 187384 records in RAM. INFO 2026-06-04 21:30:12 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:55,726,241 INFO 2026-06-04 21:30:12 MarkDuplicates Tracking 487101 as yet unmatched pairs. 36088 records in RAM. INFO 2026-06-04 21:30:14 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:56,161,390 INFO 2026-06-04 21:30:14 MarkDuplicates Tracking 490254 as yet unmatched pairs. 39229 records in RAM. INFO 2026-06-04 21:30:16 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,642,732 INFO 2026-06-04 21:30:16 MarkDuplicates Tracking 484136 as yet unmatched pairs. 33107 records in RAM. INFO 2026-06-04 21:30:17 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,585 INFO 2026-06-04 21:30:17 MarkDuplicates Tracking 483328 as yet unmatched pairs. 32290 records in RAM. INFO 2026-06-04 21:30:19 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:57,230,799 INFO 2026-06-04 21:30:19 MarkDuplicates Tracking 477355 as yet unmatched pairs. 26308 records in RAM. INFO 2026-06-04 21:30:20 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:62,392,299 INFO 2026-06-04 21:30:20 MarkDuplicates Tracking 475129 as yet unmatched pairs. 24074 records in RAM. INFO 2026-06-04 21:30:22 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:68,824,402 INFO 2026-06-04 21:30:22 MarkDuplicates Tracking 474404 as yet unmatched pairs. 23340 records in RAM. INFO 2026-06-04 21:30:23 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:76,397,849 INFO 2026-06-04 21:30:23 MarkDuplicates Tracking 471519 as yet unmatched pairs. 20448 records in RAM. INFO 2026-06-04 21:30:25 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:95,300,504 INFO 2026-06-04 21:30:25 MarkDuplicates Tracking 469732 as yet unmatched pairs. 18641 records in RAM. INFO 2026-06-04 21:30:27 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr12:101,770,441 INFO 2026-06-04 21:30:27 MarkDuplicates Tracking 467994 as yet unmatched pairs. 16890 records in RAM. INFO 2026-06-04 21:30:29 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:106,496,801 INFO 2026-06-04 21:30:29 MarkDuplicates Tracking 465771 as yet unmatched pairs. 14656 records in RAM. INFO 2026-06-04 21:30:31 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:110,445,470 INFO 2026-06-04 21:30:31 MarkDuplicates Tracking 464256 as yet unmatched pairs. 13131 records in RAM. INFO 2026-06-04 21:30:32 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:112,319,719 INFO 2026-06-04 21:30:32 MarkDuplicates Tracking 462182 as yet unmatched pairs. 11049 records in RAM. INFO 2026-06-04 21:30:34 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:118,095,721 INFO 2026-06-04 21:30:34 MarkDuplicates Tracking 460150 as yet unmatched pairs. 9007 records in RAM. INFO 2026-06-04 21:30:35 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:120,563,860 INFO 2026-06-04 21:30:35 MarkDuplicates Tracking 458740 as yet unmatched pairs. 7565 records in RAM. INFO 2026-06-04 21:30:37 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:122,309,849 INFO 2026-06-04 21:30:37 MarkDuplicates Tracking 455997 as yet unmatched pairs. 4812 records in RAM. INFO 2026-06-04 21:30:38 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:124,495,096 INFO 2026-06-04 21:30:38 MarkDuplicates Tracking 454104 as yet unmatched pairs. 2909 records in RAM. INFO 2026-06-04 21:30:40 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:132,773,247 INFO 2026-06-04 21:30:40 MarkDuplicates Tracking 452612 as yet unmatched pairs. 1410 records in RAM. INFO 2026-06-04 21:30:41 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:22,763,173 INFO 2026-06-04 21:30:41 MarkDuplicates Tracking 449969 as yet unmatched pairs. 14076 records in RAM. INFO 2026-06-04 21:30:43 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:28,819,807 INFO 2026-06-04 21:30:43 MarkDuplicates Tracking 448103 as yet unmatched pairs. 12203 records in RAM. INFO 2026-06-04 21:30:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr13:41,260,465 INFO 2026-06-04 21:30:44 MarkDuplicates Tracking 446602 as yet unmatched pairs. 10692 records in RAM. INFO 2026-06-04 21:30:46 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:46,158,631 INFO 2026-06-04 21:30:46 MarkDuplicates Tracking 445003 as yet unmatched pairs. 9087 records in RAM. INFO 2026-06-04 21:30:48 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:53,050,122 INFO 2026-06-04 21:30:48 MarkDuplicates Tracking 444838 as yet unmatched pairs. 8913 records in RAM. INFO 2026-06-04 21:30:50 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr13:79,359,665 INFO 2026-06-04 21:30:50 MarkDuplicates Tracking 440854 as yet unmatched pairs. 4914 records in RAM. INFO 2026-06-04 21:30:52 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:102,597,173 INFO 2026-06-04 21:30:52 MarkDuplicates Tracking 439207 as yet unmatched pairs. 3255 records in RAM. INFO 2026-06-04 21:30:53 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:113,309,848 INFO 2026-06-04 21:30:53 MarkDuplicates Tracking 438314 as yet unmatched pairs. 2348 records in RAM. INFO 2026-06-04 21:30:55 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:21,211,223 INFO 2026-06-04 21:30:55 MarkDuplicates Tracking 435792 as yet unmatched pairs. 52207 records in RAM. INFO 2026-06-04 21:30:57 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:23,054,588 INFO 2026-06-04 21:30:57 MarkDuplicates Tracking 433041 as yet unmatched pairs. 49450 records in RAM. INFO 2026-06-04 21:30:59 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr14:24,189,572 INFO 2026-06-04 21:30:59 MarkDuplicates Tracking 431952 as yet unmatched pairs. 48351 records in RAM. INFO 2026-06-04 21:31:01 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,417 INFO 2026-06-04 21:31:01 MarkDuplicates Tracking 429819 as yet unmatched pairs. 46209 records in RAM. INFO 2026-06-04 21:31:03 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:39,401,746 INFO 2026-06-04 21:31:03 MarkDuplicates Tracking 427468 as yet unmatched pairs. 43850 records in RAM. INFO 2026-06-04 21:31:04 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:51,993,804 INFO 2026-06-04 21:31:04 MarkDuplicates Tracking 426522 as yet unmatched pairs. 42865 records in RAM. INFO 2026-06-04 21:31:06 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:55,661,584 INFO 2026-06-04 21:31:06 MarkDuplicates Tracking 425926 as yet unmatched pairs. 42264 records in RAM. INFO 2026-06-04 21:31:07 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:64,119,480 INFO 2026-06-04 21:31:07 MarkDuplicates Tracking 422404 as yet unmatched pairs. 38735 records in RAM. INFO 2026-06-04 21:31:09 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,049 INFO 2026-06-04 21:31:09 MarkDuplicates Tracking 419994 as yet unmatched pairs. 36310 records in RAM. INFO 2026-06-04 21:31:10 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:73,569,492 INFO 2026-06-04 21:31:10 MarkDuplicates Tracking 418210 as yet unmatched pairs. 34508 records in RAM. INFO 2026-06-04 21:31:12 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:76,734,898 INFO 2026-06-04 21:31:12 MarkDuplicates Tracking 415735 as yet unmatched pairs. 32021 records in RAM. INFO 2026-06-04 21:31:13 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:90,401,289 INFO 2026-06-04 21:31:13 MarkDuplicates Tracking 417814 as yet unmatched pairs. 34075 records in RAM. INFO 2026-06-04 21:31:15 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:94,055,173 INFO 2026-06-04 21:31:15 MarkDuplicates Tracking 412281 as yet unmatched pairs. 28532 records in RAM. INFO 2026-06-04 21:31:16 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:100,529,840 INFO 2026-06-04 21:31:16 MarkDuplicates Tracking 410134 as yet unmatched pairs. 26364 records in RAM. INFO 2026-06-04 21:31:18 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:102,326,684 INFO 2026-06-04 21:31:18 MarkDuplicates Tracking 408351 as yet unmatched pairs. 24573 records in RAM. INFO 2026-06-04 21:31:19 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:104,708,542 INFO 2026-06-04 21:31:19 MarkDuplicates Tracking 406668 as yet unmatched pairs. 22880 records in RAM. INFO 2026-06-04 21:31:21 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,126 INFO 2026-06-04 21:31:21 MarkDuplicates Tracking 433480 as yet unmatched pairs. 49686 records in RAM. INFO 2026-06-04 21:31:22 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,221 INFO 2026-06-04 21:31:22 MarkDuplicates Tracking 449629 as yet unmatched pairs. 65832 records in RAM. INFO 2026-06-04 21:31:24 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,621 INFO 2026-06-04 21:31:24 MarkDuplicates Tracking 497511 as yet unmatched pairs. 113706 records in RAM. INFO 2026-06-04 21:31:26 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr14:105,587,861 INFO 2026-06-04 21:31:26 MarkDuplicates Tracking 450425 as yet unmatched pairs. 66613 records in RAM. INFO 2026-06-04 21:31:28 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,225 INFO 2026-06-04 21:31:28 MarkDuplicates Tracking 474381 as yet unmatched pairs. 90564 records in RAM. INFO 2026-06-04 21:31:29 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,126 INFO 2026-06-04 21:31:29 MarkDuplicates Tracking 432410 as yet unmatched pairs. 48587 records in RAM. INFO 2026-06-04 21:31:31 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,226 INFO 2026-06-04 21:31:31 MarkDuplicates Tracking 584521 as yet unmatched pairs. 200692 records in RAM. INFO 2026-06-04 21:31:32 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,313 INFO 2026-06-04 21:31:32 MarkDuplicates Tracking 518641 as yet unmatched pairs. 134807 records in RAM. INFO 2026-06-04 21:31:34 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,462 INFO 2026-06-04 21:31:34 MarkDuplicates Tracking 431492 as yet unmatched pairs. 47651 records in RAM. INFO 2026-06-04 21:31:35 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,125 INFO 2026-06-04 21:31:35 MarkDuplicates Tracking 421178 as yet unmatched pairs. 37325 records in RAM. INFO 2026-06-04 21:31:37 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,214 INFO 2026-06-04 21:31:37 MarkDuplicates Tracking 387104 as yet unmatched pairs. 3251 records in RAM. INFO 2026-06-04 21:31:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,496 INFO 2026-06-04 21:31:38 MarkDuplicates Tracking 402717 as yet unmatched pairs. 18839 records in RAM. INFO 2026-06-04 21:31:40 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:22,866,365 INFO 2026-06-04 21:31:40 MarkDuplicates Tracking 384347 as yet unmatched pairs. 34309 records in RAM. INFO 2026-06-04 21:31:41 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:32,597,935 INFO 2026-06-04 21:31:41 MarkDuplicates Tracking 382043 as yet unmatched pairs. 32003 records in RAM. INFO 2026-06-04 21:31:43 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:40,351,047 INFO 2026-06-04 21:31:43 MarkDuplicates Tracking 388535 as yet unmatched pairs. 38488 records in RAM. INFO 2026-06-04 21:31:44 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:40,856,831 INFO 2026-06-04 21:31:44 MarkDuplicates Tracking 379232 as yet unmatched pairs. 29182 records in RAM. INFO 2026-06-04 21:31:46 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:42,439,202 INFO 2026-06-04 21:31:46 MarkDuplicates Tracking 376633 as yet unmatched pairs. 26575 records in RAM. INFO 2026-06-04 21:31:47 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:43,766,762 INFO 2026-06-04 21:31:47 MarkDuplicates Tracking 378268 as yet unmatched pairs. 28205 records in RAM. INFO 2026-06-04 21:31:49 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:45,023,303 INFO 2026-06-04 21:31:49 MarkDuplicates Tracking 373287 as yet unmatched pairs. 23222 records in RAM. INFO 2026-06-04 21:31:51 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:50,749,653 INFO 2026-06-04 21:31:51 MarkDuplicates Tracking 372648 as yet unmatched pairs. 22572 records in RAM. INFO 2026-06-04 21:31:52 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:57,263,119 INFO 2026-06-04 21:31:52 MarkDuplicates Tracking 370674 as yet unmatched pairs. 20597 records in RAM. INFO 2026-06-04 21:31:55 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr15:62,067,892 INFO 2026-06-04 21:31:55 MarkDuplicates Tracking 367465 as yet unmatched pairs. 17385 records in RAM. INFO 2026-06-04 21:31:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:64,499,716 INFO 2026-06-04 21:31:57 MarkDuplicates Tracking 366711 as yet unmatched pairs. 16619 records in RAM. INFO 2026-06-04 21:31:58 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:68,194,002 INFO 2026-06-04 21:31:58 MarkDuplicates Tracking 363905 as yet unmatched pairs. 13805 records in RAM. INFO 2026-06-04 21:32:00 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:73,273,914 INFO 2026-06-04 21:32:00 MarkDuplicates Tracking 361983 as yet unmatched pairs. 11872 records in RAM. INFO 2026-06-04 21:32:01 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:75,359,374 INFO 2026-06-04 21:32:01 MarkDuplicates Tracking 359820 as yet unmatched pairs. 9706 records in RAM. INFO 2026-06-04 21:32:02 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:78,488,221 INFO 2026-06-04 21:32:02 MarkDuplicates Tracking 357951 as yet unmatched pairs. 7827 records in RAM. INFO 2026-06-04 21:32:04 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:84,799,836 INFO 2026-06-04 21:32:04 MarkDuplicates Tracking 356089 as yet unmatched pairs. 5956 records in RAM. INFO 2026-06-04 21:32:05 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:89,801,583 INFO 2026-06-04 21:32:05 MarkDuplicates Tracking 356791 as yet unmatched pairs. 6651 records in RAM. INFO 2026-06-04 21:32:07 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:90,877,156 INFO 2026-06-04 21:32:07 MarkDuplicates Tracking 352983 as yet unmatched pairs. 2837 records in RAM. INFO 2026-06-04 21:32:09 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr16:18,724 INFO 2026-06-04 21:32:09 MarkDuplicates Tracking 350151 as yet unmatched pairs. 61227 records in RAM. INFO 2026-06-04 21:32:10 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:1,229,348 INFO 2026-06-04 21:32:10 MarkDuplicates Tracking 348035 as yet unmatched pairs. 59102 records in RAM. INFO 2026-06-04 21:32:12 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:2,084,682 INFO 2026-06-04 21:32:12 MarkDuplicates Tracking 346819 as yet unmatched pairs. 57880 records in RAM. INFO 2026-06-04 21:32:14 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:2,757,526 INFO 2026-06-04 21:32:14 MarkDuplicates Tracking 345651 as yet unmatched pairs. 56707 records in RAM. INFO 2026-06-04 21:32:15 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,297 INFO 2026-06-04 21:32:15 MarkDuplicates Tracking 344252 as yet unmatched pairs. 55304 records in RAM. INFO 2026-06-04 21:32:16 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:3,729,307 INFO 2026-06-04 21:32:16 MarkDuplicates Tracking 340152 as yet unmatched pairs. 51201 records in RAM. INFO 2026-06-04 21:32:18 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:8,855,272 INFO 2026-06-04 21:32:18 MarkDuplicates Tracking 338360 as yet unmatched pairs. 49396 records in RAM. INFO 2026-06-04 21:32:21 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr16:14,140,609 INFO 2026-06-04 21:32:21 MarkDuplicates Tracking 337185 as yet unmatched pairs. 48211 records in RAM. INFO 2026-06-04 21:32:22 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:14,975,163 INFO 2026-06-04 21:32:22 MarkDuplicates Tracking 335653 as yet unmatched pairs. 46678 records in RAM. INFO 2026-06-04 21:32:24 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:16,250,969 INFO 2026-06-04 21:32:24 MarkDuplicates Tracking 334229 as yet unmatched pairs. 45246 records in RAM. INFO 2026-06-04 21:32:25 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,329 INFO 2026-06-04 21:32:25 MarkDuplicates Tracking 332708 as yet unmatched pairs. 43723 records in RAM. INFO 2026-06-04 21:32:27 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:18,549,568 INFO 2026-06-04 21:32:27 MarkDuplicates Tracking 334388 as yet unmatched pairs. 45403 records in RAM. INFO 2026-06-04 21:32:28 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,238 INFO 2026-06-04 21:32:28 MarkDuplicates Tracking 329865 as yet unmatched pairs. 40879 records in RAM. INFO 2026-06-04 21:32:29 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,460,099 INFO 2026-06-04 21:32:29 MarkDuplicates Tracking 330168 as yet unmatched pairs. 41172 records in RAM. INFO 2026-06-04 21:32:31 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,886,352 INFO 2026-06-04 21:32:31 MarkDuplicates Tracking 329917 as yet unmatched pairs. 40919 records in RAM. INFO 2026-06-04 21:32:32 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,777 INFO 2026-06-04 21:32:32 MarkDuplicates Tracking 328137 as yet unmatched pairs. 39139 records in RAM. INFO 2026-06-04 21:32:33 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:23,689,233 INFO 2026-06-04 21:32:33 MarkDuplicates Tracking 327051 as yet unmatched pairs. 38052 records in RAM. INFO 2026-06-04 21:32:35 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:27,549,678 INFO 2026-06-04 21:32:35 MarkDuplicates Tracking 325580 as yet unmatched pairs. 36571 records in RAM. INFO 2026-06-04 21:32:36 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:28,734,960 INFO 2026-06-04 21:32:36 MarkDuplicates Tracking 323659 as yet unmatched pairs. 34647 records in RAM. INFO 2026-06-04 21:32:37 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,435,855 INFO 2026-06-04 21:32:37 MarkDuplicates Tracking 324360 as yet unmatched pairs. 35339 records in RAM. INFO 2026-06-04 21:32:39 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,779,546 INFO 2026-06-04 21:32:39 MarkDuplicates Tracking 330407 as yet unmatched pairs. 41386 records in RAM. INFO 2026-06-04 21:32:40 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:29,987,792 INFO 2026-06-04 21:32:40 MarkDuplicates Tracking 319492 as yet unmatched pairs. 30467 records in RAM. INFO 2026-06-04 21:32:42 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,318 INFO 2026-06-04 21:32:42 MarkDuplicates Tracking 317444 as yet unmatched pairs. 28415 records in RAM. INFO 2026-06-04 21:32:43 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,662,645 INFO 2026-06-04 21:32:43 MarkDuplicates Tracking 316474 as yet unmatched pairs. 27438 records in RAM. INFO 2026-06-04 21:32:44 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,757 INFO 2026-06-04 21:32:44 MarkDuplicates Tracking 314893 as yet unmatched pairs. 25845 records in RAM. INFO 2026-06-04 21:32:46 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:47,454,034 INFO 2026-06-04 21:32:46 MarkDuplicates Tracking 313239 as yet unmatched pairs. 24183 records in RAM. INFO 2026-06-04 21:32:49 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr16:48,334,338 INFO 2026-06-04 21:32:49 MarkDuplicates Tracking 310846 as yet unmatched pairs. 21788 records in RAM. INFO 2026-06-04 21:32:50 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:56,451,084 INFO 2026-06-04 21:32:50 MarkDuplicates Tracking 308496 as yet unmatched pairs. 19431 records in RAM. INFO 2026-06-04 21:32:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:57,751,260 INFO 2026-06-04 21:32:52 MarkDuplicates Tracking 306351 as yet unmatched pairs. 17282 records in RAM. INFO 2026-06-04 21:32:54 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:66,943,856 INFO 2026-06-04 21:32:54 MarkDuplicates Tracking 306567 as yet unmatched pairs. 17493 records in RAM. INFO 2026-06-04 21:32:55 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:67,909,221 INFO 2026-06-04 21:32:55 MarkDuplicates Tracking 302551 as yet unmatched pairs. 13470 records in RAM. INFO 2026-06-04 21:32:57 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:69,368,375 INFO 2026-06-04 21:32:57 MarkDuplicates Tracking 300038 as yet unmatched pairs. 10947 records in RAM. INFO 2026-06-04 21:32:58 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:71,634,609 INFO 2026-06-04 21:32:58 MarkDuplicates Tracking 298816 as yet unmatched pairs. 9723 records in RAM. INFO 2026-06-04 21:33:00 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:75,451,757 INFO 2026-06-04 21:33:00 MarkDuplicates Tracking 297229 as yet unmatched pairs. 8130 records in RAM. INFO 2026-06-04 21:33:01 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:84,979,194 INFO 2026-06-04 21:33:01 MarkDuplicates Tracking 294601 as yet unmatched pairs. 5490 records in RAM. INFO 2026-06-04 21:33:03 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,712,643 INFO 2026-06-04 21:33:03 MarkDuplicates Tracking 292132 as yet unmatched pairs. 3016 records in RAM. INFO 2026-06-04 21:33:04 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:89,695,707 INFO 2026-06-04 21:33:04 MarkDuplicates Tracking 290209 as yet unmatched pairs. 1086 records in RAM. INFO 2026-06-04 21:33:06 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,934 INFO 2026-06-04 21:33:06 MarkDuplicates Tracking 297475 as yet unmatched pairs. 93419 records in RAM. INFO 2026-06-04 21:33:08 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:1,897,083 INFO 2026-06-04 21:33:08 MarkDuplicates Tracking 285933 as yet unmatched pairs. 81877 records in RAM. INFO 2026-06-04 21:33:09 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:4,009,657 INFO 2026-06-04 21:33:09 MarkDuplicates Tracking 284220 as yet unmatched pairs. 80160 records in RAM. INFO 2026-06-04 21:33:12 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr17:4,945,892 INFO 2026-06-04 21:33:12 MarkDuplicates Tracking 287119 as yet unmatched pairs. 83050 records in RAM. INFO 2026-06-04 21:33:13 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,222,208 INFO 2026-06-04 21:33:13 MarkDuplicates Tracking 281384 as yet unmatched pairs. 77308 records in RAM. INFO 2026-06-04 21:33:15 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:7,499,480 INFO 2026-06-04 21:33:15 MarkDuplicates Tracking 278386 as yet unmatched pairs. 74304 records in RAM. INFO 2026-06-04 21:33:17 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:7,909,217 INFO 2026-06-04 21:33:17 MarkDuplicates Tracking 276720 as yet unmatched pairs. 72638 records in RAM. INFO 2026-06-04 21:33:19 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr17:16,075,595 INFO 2026-06-04 21:33:19 MarkDuplicates Tracking 274659 as yet unmatched pairs. 70568 records in RAM. INFO 2026-06-04 21:33:20 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:17,812,628 INFO 2026-06-04 21:33:20 MarkDuplicates Tracking 276007 as yet unmatched pairs. 71914 records in RAM. INFO 2026-06-04 21:33:22 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:18,610,148 INFO 2026-06-04 21:33:22 MarkDuplicates Tracking 270149 as yet unmatched pairs. 66049 records in RAM. INFO 2026-06-04 21:35:29 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 127s. Last read position: chr17:28,350,473 INFO 2026-06-04 21:35:29 MarkDuplicates Tracking 268478 as yet unmatched pairs. 64366 records in RAM. INFO 2026-06-04 21:35:31 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:29,286,466 INFO 2026-06-04 21:35:31 MarkDuplicates Tracking 266769 as yet unmatched pairs. 62652 records in RAM. INFO 2026-06-04 21:35:32 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:31,994,614 INFO 2026-06-04 21:35:32 MarkDuplicates Tracking 265419 as yet unmatched pairs. 61296 records in RAM. INFO 2026-06-04 21:35:34 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,118 INFO 2026-06-04 21:35:34 MarkDuplicates Tracking 263599 as yet unmatched pairs. 59469 records in RAM. INFO 2026-06-04 21:35:35 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:38,578,537 INFO 2026-06-04 21:35:35 MarkDuplicates Tracking 261112 as yet unmatched pairs. 56978 records in RAM. INFO 2026-06-04 21:35:37 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,662,984 INFO 2026-06-04 21:35:37 MarkDuplicates Tracking 259383 as yet unmatched pairs. 55231 records in RAM. INFO 2026-06-04 21:35:38 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,329 INFO 2026-06-04 21:35:38 MarkDuplicates Tracking 261177 as yet unmatched pairs. 57021 records in RAM. INFO 2026-06-04 21:35:40 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:40,818,408 INFO 2026-06-04 21:35:40 MarkDuplicates Tracking 255367 as yet unmatched pairs. 51211 records in RAM. INFO 2026-06-04 21:35:42 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,690,786 INFO 2026-06-04 21:35:42 MarkDuplicates Tracking 257646 as yet unmatched pairs. 53487 records in RAM. INFO 2026-06-04 21:35:43 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr17:42,562,416 INFO 2026-06-04 21:35:43 MarkDuplicates Tracking 251584 as yet unmatched pairs. 47425 records in RAM. INFO 2026-06-04 21:35:45 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:44,194,380 INFO 2026-06-04 21:35:45 MarkDuplicates Tracking 249137 as yet unmatched pairs. 44976 records in RAM. INFO 2026-06-04 21:35:46 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:45,503,405 INFO 2026-06-04 21:35:46 MarkDuplicates Tracking 246833 as yet unmatched pairs. 42669 records in RAM. INFO 2026-06-04 21:35:48 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:47,619,136 INFO 2026-06-04 21:35:48 MarkDuplicates Tracking 246053 as yet unmatched pairs. 41887 records in RAM. INFO 2026-06-04 21:35:50 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:49,409,147 INFO 2026-06-04 21:35:50 MarkDuplicates Tracking 244632 as yet unmatched pairs. 40462 records in RAM. INFO 2026-06-04 21:35:52 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,513 INFO 2026-06-04 21:35:52 MarkDuplicates Tracking 250946 as yet unmatched pairs. 46773 records in RAM. INFO 2026-06-04 21:35:54 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,946 INFO 2026-06-04 21:35:54 MarkDuplicates Tracking 247204 as yet unmatched pairs. 43029 records in RAM. INFO 2026-06-04 21:35:55 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,684,863 INFO 2026-06-04 21:35:55 MarkDuplicates Tracking 238719 as yet unmatched pairs. 34538 records in RAM. INFO 2026-06-04 21:35:57 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:58,358,482 INFO 2026-06-04 21:35:57 MarkDuplicates Tracking 236130 as yet unmatched pairs. 31946 records in RAM. INFO 2026-06-04 21:35:58 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:59,677,119 INFO 2026-06-04 21:35:58 MarkDuplicates Tracking 241638 as yet unmatched pairs. 37453 records in RAM. INFO 2026-06-04 21:36:00 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:60,294,774 INFO 2026-06-04 21:36:00 MarkDuplicates Tracking 232232 as yet unmatched pairs. 28043 records in RAM. INFO 2026-06-04 21:36:01 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:64,171,173 INFO 2026-06-04 21:36:01 MarkDuplicates Tracking 230114 as yet unmatched pairs. 25923 records in RAM. INFO 2026-06-04 21:36:03 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:68,250,945 INFO 2026-06-04 21:36:03 MarkDuplicates Tracking 228473 as yet unmatched pairs. 24279 records in RAM. INFO 2026-06-04 21:36:04 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:74,775,622 INFO 2026-06-04 21:36:04 MarkDuplicates Tracking 226250 as yet unmatched pairs. 22044 records in RAM. INFO 2026-06-04 21:36:07 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr17:75,611,820 INFO 2026-06-04 21:36:07 MarkDuplicates Tracking 226864 as yet unmatched pairs. 22658 records in RAM. INFO 2026-06-04 21:36:09 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:75,955,937 INFO 2026-06-04 21:36:09 MarkDuplicates Tracking 222740 as yet unmatched pairs. 18529 records in RAM. INFO 2026-06-04 21:36:11 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:78,171,035 INFO 2026-06-04 21:36:11 MarkDuplicates Tracking 222489 as yet unmatched pairs. 18272 records in RAM. INFO 2026-06-04 21:36:12 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:80,291,959 INFO 2026-06-04 21:36:12 MarkDuplicates Tracking 218288 as yet unmatched pairs. 14068 records in RAM. INFO 2026-06-04 21:36:13 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:81,636,322 INFO 2026-06-04 21:36:13 MarkDuplicates Tracking 215693 as yet unmatched pairs. 11470 records in RAM. INFO 2026-06-04 21:36:15 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:82,016,496 INFO 2026-06-04 21:36:15 MarkDuplicates Tracking 215062 as yet unmatched pairs. 10834 records in RAM. INFO 2026-06-04 21:36:17 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,929 INFO 2026-06-04 21:36:17 MarkDuplicates Tracking 220793 as yet unmatched pairs. 16563 records in RAM. INFO 2026-06-04 21:36:18 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:82,086,381 INFO 2026-06-04 21:36:18 MarkDuplicates Tracking 218596 as yet unmatched pairs. 14364 records in RAM. INFO 2026-06-04 21:36:19 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,328 INFO 2026-06-04 21:36:19 MarkDuplicates Tracking 213065 as yet unmatched pairs. 8832 records in RAM. INFO 2026-06-04 21:36:21 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:82,630,957 INFO 2026-06-04 21:36:21 MarkDuplicates Tracking 205131 as yet unmatched pairs. 895 records in RAM. INFO 2026-06-04 21:36:23 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr18:9,134,193 INFO 2026-06-04 21:36:23 MarkDuplicates Tracking 202959 as yet unmatched pairs. 11919 records in RAM. INFO 2026-06-04 21:36:24 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr18:22,984,955 INFO 2026-06-04 21:36:24 MarkDuplicates Tracking 201040 as yet unmatched pairs. 9993 records in RAM. INFO 2026-06-04 21:36:25 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr18:32,018,859 INFO 2026-06-04 21:36:25 MarkDuplicates Tracking 199314 as yet unmatched pairs. 8261 records in RAM. INFO 2026-06-04 21:36:27 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr18:47,873,937 INFO 2026-06-04 21:36:27 MarkDuplicates Tracking 197678 as yet unmatched pairs. 6625 records in RAM. INFO 2026-06-04 21:36:28 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr18:56,603,042 INFO 2026-06-04 21:36:28 MarkDuplicates Tracking 196216 as yet unmatched pairs. 5162 records in RAM. INFO 2026-06-04 21:36:30 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr18:62,264,129 INFO 2026-06-04 21:36:30 MarkDuplicates Tracking 195476 as yet unmatched pairs. 4420 records in RAM. INFO 2026-06-04 21:36:32 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr18:79,345,760 INFO 2026-06-04 21:36:32 MarkDuplicates Tracking 191514 as yet unmatched pairs. 454 records in RAM. INFO 2026-06-04 21:36:35 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 3s. Last read position: chr19:797,475 INFO 2026-06-04 21:36:35 MarkDuplicates Tracking 190853 as yet unmatched pairs. 94494 records in RAM. INFO 2026-06-04 21:36:37 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr19:1,221,286 INFO 2026-06-04 21:36:37 MarkDuplicates Tracking 187014 as yet unmatched pairs. 90654 records in RAM. INFO 2026-06-04 21:36:38 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:1,987,243 INFO 2026-06-04 21:36:38 MarkDuplicates Tracking 185396 as yet unmatched pairs. 89032 records in RAM. INFO 2026-06-04 21:36:40 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:3,193,415 INFO 2026-06-04 21:36:40 MarkDuplicates Tracking 183088 as yet unmatched pairs. 86723 records in RAM. INFO 2026-06-04 21:36:41 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:4,327,348 INFO 2026-06-04 21:36:41 MarkDuplicates Tracking 181845 as yet unmatched pairs. 85480 records in RAM. INFO 2026-06-04 21:36:43 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,328 INFO 2026-06-04 21:36:43 MarkDuplicates Tracking 179871 as yet unmatched pairs. 83500 records in RAM. INFO 2026-06-04 21:36:45 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:6,828,869 INFO 2026-06-04 21:36:45 MarkDuplicates Tracking 176399 as yet unmatched pairs. 80028 records in RAM. INFO 2026-06-04 21:36:46 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:8,359,109 INFO 2026-06-04 21:36:46 MarkDuplicates Tracking 174095 as yet unmatched pairs. 77722 records in RAM. INFO 2026-06-04 21:36:47 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:10,461,913 INFO 2026-06-04 21:36:47 MarkDuplicates Tracking 172207 as yet unmatched pairs. 75833 records in RAM. INFO 2026-06-04 21:36:49 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,852 INFO 2026-06-04 21:36:49 MarkDuplicates Tracking 170189 as yet unmatched pairs. 73812 records in RAM. INFO 2026-06-04 21:36:51 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr19:12,731,026 INFO 2026-06-04 21:36:51 MarkDuplicates Tracking 168703 as yet unmatched pairs. 72324 records in RAM. INFO 2026-06-04 21:36:53 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:13,889,258 INFO 2026-06-04 21:36:53 MarkDuplicates Tracking 166062 as yet unmatched pairs. 69680 records in RAM. INFO 2026-06-04 21:36:54 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:15,115,870 INFO 2026-06-04 21:36:54 MarkDuplicates Tracking 164548 as yet unmatched pairs. 68164 records in RAM. INFO 2026-06-04 21:36:56 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:16,521,613 INFO 2026-06-04 21:36:56 MarkDuplicates Tracking 162138 as yet unmatched pairs. 65754 records in RAM. INFO 2026-06-04 21:36:58 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,391 INFO 2026-06-04 21:36:58 MarkDuplicates Tracking 167130 as yet unmatched pairs. 70741 records in RAM. INFO 2026-06-04 21:36:59 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:18,860,352 INFO 2026-06-04 21:36:59 MarkDuplicates Tracking 157817 as yet unmatched pairs. 61427 records in RAM. INFO 2026-06-04 21:37:01 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,462 INFO 2026-06-04 21:37:01 MarkDuplicates Tracking 156092 as yet unmatched pairs. 59700 records in RAM. INFO 2026-06-04 21:37:03 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:34,678,764 INFO 2026-06-04 21:37:03 MarkDuplicates Tracking 154065 as yet unmatched pairs. 57671 records in RAM. INFO 2026-06-04 21:37:05 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:35,629,148 INFO 2026-06-04 21:37:05 MarkDuplicates Tracking 151822 as yet unmatched pairs. 55425 records in RAM. INFO 2026-06-04 21:37:06 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:38,088,734 INFO 2026-06-04 21:37:06 MarkDuplicates Tracking 149818 as yet unmatched pairs. 53420 records in RAM. INFO 2026-06-04 21:37:08 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,126 INFO 2026-06-04 21:37:08 MarkDuplicates Tracking 148854 as yet unmatched pairs. 52454 records in RAM. INFO 2026-06-04 21:37:09 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:38,838,944 INFO 2026-06-04 21:37:09 MarkDuplicates Tracking 147902 as yet unmatched pairs. 51502 records in RAM. INFO 2026-06-04 21:37:11 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:39,863,770 INFO 2026-06-04 21:37:11 MarkDuplicates Tracking 145646 as yet unmatched pairs. 49246 records in RAM. INFO 2026-06-04 21:37:13 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:39,875,457 INFO 2026-06-04 21:37:13 MarkDuplicates Tracking 155233 as yet unmatched pairs. 58831 records in RAM. INFO 2026-06-04 21:37:14 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:39,877,170 INFO 2026-06-04 21:37:14 MarkDuplicates Tracking 149541 as yet unmatched pairs. 53137 records in RAM. INFO 2026-06-04 21:37:15 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:39,879,745 INFO 2026-06-04 21:37:15 MarkDuplicates Tracking 153526 as yet unmatched pairs. 57122 records in RAM. INFO 2026-06-04 21:37:16 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,468 INFO 2026-06-04 21:37:16 MarkDuplicates Tracking 161886 as yet unmatched pairs. 65479 records in RAM. INFO 2026-06-04 21:37:18 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:39,891,774 INFO 2026-06-04 21:37:18 MarkDuplicates Tracking 170118 as yet unmatched pairs. 73709 records in RAM. INFO 2026-06-04 21:37:19 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,149 INFO 2026-06-04 21:37:19 MarkDuplicates Tracking 176414 as yet unmatched pairs. 80005 records in RAM. INFO 2026-06-04 21:37:21 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:39,895,879 INFO 2026-06-04 21:37:21 MarkDuplicates Tracking 145787 as yet unmatched pairs. 49378 records in RAM. INFO 2026-06-04 21:37:22 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:39,902,694 INFO 2026-06-04 21:37:22 MarkDuplicates Tracking 143104 as yet unmatched pairs. 46694 records in RAM. INFO 2026-06-04 21:37:24 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr19:39,915,329 INFO 2026-06-04 21:37:24 MarkDuplicates Tracking 135993 as yet unmatched pairs. 39578 records in RAM. INFO 2026-06-04 21:37:26 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,927,428 INFO 2026-06-04 21:37:26 MarkDuplicates Tracking 137464 as yet unmatched pairs. 41046 records in RAM. INFO 2026-06-04 21:37:27 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:40,577,390 INFO 2026-06-04 21:37:27 MarkDuplicates Tracking 125018 as yet unmatched pairs. 28599 records in RAM. INFO 2026-06-04 21:37:28 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:41,686,859 INFO 2026-06-04 21:37:28 MarkDuplicates Tracking 124196 as yet unmatched pairs. 27773 records in RAM. INFO 2026-06-04 21:37:30 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:41,721,036 INFO 2026-06-04 21:37:30 MarkDuplicates Tracking 128308 as yet unmatched pairs. 31884 records in RAM. INFO 2026-06-04 21:37:32 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:42,294,947 INFO 2026-06-04 21:37:32 MarkDuplicates Tracking 119347 as yet unmatched pairs. 22922 records in RAM. INFO 2026-06-04 21:37:33 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:44,172,165 INFO 2026-06-04 21:37:33 MarkDuplicates Tracking 117510 as yet unmatched pairs. 21084 records in RAM. INFO 2026-06-04 21:37:34 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:45,687,636 INFO 2026-06-04 21:37:34 MarkDuplicates Tracking 116719 as yet unmatched pairs. 20291 records in RAM. INFO 2026-06-04 21:37:36 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:47,319,850 INFO 2026-06-04 21:37:36 MarkDuplicates Tracking 112815 as yet unmatched pairs. 16380 records in RAM. INFO 2026-06-04 21:37:38 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr19:48,900,805 INFO 2026-06-04 21:37:38 MarkDuplicates Tracking 111664 as yet unmatched pairs. 15222 records in RAM. INFO 2026-06-04 21:37:40 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,217 INFO 2026-06-04 21:37:40 MarkDuplicates Tracking 115871 as yet unmatched pairs. 19426 records in RAM. INFO 2026-06-04 21:37:42 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,861,631 INFO 2026-06-04 21:37:42 MarkDuplicates Tracking 106728 as yet unmatched pairs. 10282 records in RAM. INFO 2026-06-04 21:37:43 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:51,226,309 INFO 2026-06-04 21:37:43 MarkDuplicates Tracking 103993 as yet unmatched pairs. 7542 records in RAM. INFO 2026-06-04 21:37:45 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:54,174,031 INFO 2026-06-04 21:37:45 MarkDuplicates Tracking 102537 as yet unmatched pairs. 6083 records in RAM. INFO 2026-06-04 21:37:47 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:55,386,349 INFO 2026-06-04 21:37:47 MarkDuplicates Tracking 102684 as yet unmatched pairs. 6224 records in RAM. INFO 2026-06-04 21:37:49 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:57,850,451 INFO 2026-06-04 21:37:49 MarkDuplicates Tracking 98895 as yet unmatched pairs. 2434 records in RAM. INFO 2026-06-04 21:37:51 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr20:763,837 INFO 2026-06-04 21:37:51 MarkDuplicates Tracking 96718 as yet unmatched pairs. 25095 records in RAM. INFO 2026-06-04 21:37:52 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:3,803,429 INFO 2026-06-04 21:37:52 MarkDuplicates Tracking 93996 as yet unmatched pairs. 22367 records in RAM. INFO 2026-06-04 21:37:54 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr20:17,625,532 INFO 2026-06-04 21:37:54 MarkDuplicates Tracking 93417 as yet unmatched pairs. 21785 records in RAM. INFO 2026-06-04 21:37:55 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:23,635,327 INFO 2026-06-04 21:37:55 MarkDuplicates Tracking 91412 as yet unmatched pairs. 19777 records in RAM. INFO 2026-06-04 21:37:57 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:33,624,779 INFO 2026-06-04 21:37:57 MarkDuplicates Tracking 88371 as yet unmatched pairs. 16733 records in RAM. INFO 2026-06-04 21:37:58 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:35,279,066 INFO 2026-06-04 21:37:58 MarkDuplicates Tracking 87833 as yet unmatched pairs. 16192 records in RAM. INFO 2026-06-04 21:38:00 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr20:37,199,194 INFO 2026-06-04 21:38:00 MarkDuplicates Tracking 86503 as yet unmatched pairs. 14859 records in RAM. INFO 2026-06-04 21:38:01 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:44,197,340 INFO 2026-06-04 21:38:01 MarkDuplicates Tracking 82493 as yet unmatched pairs. 10846 records in RAM. INFO 2026-06-04 21:38:03 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr20:45,949,294 INFO 2026-06-04 21:38:03 MarkDuplicates Tracking 80541 as yet unmatched pairs. 8892 records in RAM. INFO 2026-06-04 21:38:04 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr20:50,130,899 INFO 2026-06-04 21:38:04 MarkDuplicates Tracking 78823 as yet unmatched pairs. 7173 records in RAM. INFO 2026-06-04 21:38:06 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,645 INFO 2026-06-04 21:38:06 MarkDuplicates Tracking 77307 as yet unmatched pairs. 5656 records in RAM. INFO 2026-06-04 21:38:07 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,368 INFO 2026-06-04 21:38:07 MarkDuplicates Tracking 77731 as yet unmatched pairs. 6079 records in RAM. INFO 2026-06-04 21:38:09 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr20:63,889,858 INFO 2026-06-04 21:38:09 MarkDuplicates Tracking 72708 as yet unmatched pairs. 1054 records in RAM. INFO 2026-06-04 21:38:10 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,229 INFO 2026-06-04 21:38:10 MarkDuplicates Tracking 70761 as yet unmatched pairs. 12878 records in RAM. INFO 2026-06-04 21:38:11 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr21:14,374,075 INFO 2026-06-04 21:38:11 MarkDuplicates Tracking 69830 as yet unmatched pairs. 11944 records in RAM. INFO 2026-06-04 21:38:13 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr21:31,671,508 INFO 2026-06-04 21:38:13 MarkDuplicates Tracking 67878 as yet unmatched pairs. 9992 records in RAM. INFO 2026-06-04 21:38:14 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr21:34,716,316 INFO 2026-06-04 21:38:14 MarkDuplicates Tracking 65672 as yet unmatched pairs. 7782 records in RAM. INFO 2026-06-04 21:38:15 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:39,348,545 INFO 2026-06-04 21:38:15 MarkDuplicates Tracking 64698 as yet unmatched pairs. 6805 records in RAM. INFO 2026-06-04 21:38:17 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr21:43,021,325 INFO 2026-06-04 21:38:17 MarkDuplicates Tracking 61884 as yet unmatched pairs. 3991 records in RAM. INFO 2026-06-04 21:38:19 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr21:45,509,492 INFO 2026-06-04 21:38:19 MarkDuplicates Tracking 60297 as yet unmatched pairs. 2404 records in RAM. INFO 2026-06-04 21:38:21 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:17,203,661 INFO 2026-06-04 21:38:21 MarkDuplicates Tracking 58257 as yet unmatched pairs. 27944 records in RAM. INFO 2026-06-04 21:38:23 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr22:20,709,109 INFO 2026-06-04 21:38:23 MarkDuplicates Tracking 56055 as yet unmatched pairs. 25742 records in RAM. INFO 2026-06-04 21:38:24 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:23,182,212 INFO 2026-06-04 21:38:24 MarkDuplicates Tracking 54506 as yet unmatched pairs. 24191 records in RAM. INFO 2026-06-04 21:38:26 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr22:24,568,096 INFO 2026-06-04 21:38:26 MarkDuplicates Tracking 52870 as yet unmatched pairs. 22555 records in RAM. INFO 2026-06-04 21:38:28 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr22:29,273,813 INFO 2026-06-04 21:38:28 MarkDuplicates Tracking 51448 as yet unmatched pairs. 21133 records in RAM. INFO 2026-06-04 21:38:30 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr22:30,346,435 INFO 2026-06-04 21:38:30 MarkDuplicates Tracking 48350 as yet unmatched pairs. 18035 records in RAM. INFO 2026-06-04 21:38:32 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr22:35,659,496 INFO 2026-06-04 21:38:32 MarkDuplicates Tracking 46044 as yet unmatched pairs. 15729 records in RAM. INFO 2026-06-04 21:38:33 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:37,018,324 INFO 2026-06-04 21:38:33 MarkDuplicates Tracking 46469 as yet unmatched pairs. 16154 records in RAM. INFO 2026-06-04 21:38:35 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr22:38,291,895 INFO 2026-06-04 21:38:35 MarkDuplicates Tracking 41736 as yet unmatched pairs. 11421 records in RAM. INFO 2026-06-04 21:38:36 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr22:40,285,758 INFO 2026-06-04 21:38:36 MarkDuplicates Tracking 39833 as yet unmatched pairs. 9518 records in RAM. INFO 2026-06-04 21:38:37 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr22:41,636,111 INFO 2026-06-04 21:38:37 MarkDuplicates Tracking 40858 as yet unmatched pairs. 10541 records in RAM. INFO 2026-06-04 21:38:39 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:42,835,384 INFO 2026-06-04 21:38:39 MarkDuplicates Tracking 36413 as yet unmatched pairs. 6096 records in RAM. INFO 2026-06-04 21:38:41 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:49,921,682 INFO 2026-06-04 21:38:41 MarkDuplicates Tracking 34267 as yet unmatched pairs. 3950 records in RAM. INFO 2026-06-04 21:38:42 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:50,523,992 INFO 2026-06-04 21:38:42 MarkDuplicates Tracking 33015 as yet unmatched pairs. 2695 records in RAM. INFO 2026-06-04 21:38:44 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:3,110,225 INFO 2026-06-04 21:38:44 MarkDuplicates Tracking 29181 as yet unmatched pairs. 25042 records in RAM. INFO 2026-06-04 21:38:46 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:19,351,395 INFO 2026-06-04 21:38:46 MarkDuplicates Tracking 27867 as yet unmatched pairs. 23721 records in RAM. INFO 2026-06-04 21:38:47 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chrX:40,072,412 INFO 2026-06-04 21:38:47 MarkDuplicates Tracking 26201 as yet unmatched pairs. 22055 records in RAM. INFO 2026-06-04 21:38:49 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:43,744,986 INFO 2026-06-04 21:38:49 MarkDuplicates Tracking 24427 as yet unmatched pairs. 20281 records in RAM. INFO 2026-06-04 21:38:50 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:48,707,492 INFO 2026-06-04 21:38:50 MarkDuplicates Tracking 21786 as yet unmatched pairs. 17640 records in RAM. INFO 2026-06-04 21:38:52 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chrX:53,431,584 INFO 2026-06-04 21:38:52 MarkDuplicates Tracking 20763 as yet unmatched pairs. 16614 records in RAM. INFO 2026-06-04 21:38:53 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:66,033,523 INFO 2026-06-04 21:38:53 MarkDuplicates Tracking 17938 as yet unmatched pairs. 13789 records in RAM. INFO 2026-06-04 21:38:55 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chrX:71,559,638 INFO 2026-06-04 21:38:55 MarkDuplicates Tracking 17434 as yet unmatched pairs. 13285 records in RAM. INFO 2026-06-04 21:38:56 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chrX:78,046,306 INFO 2026-06-04 21:38:56 MarkDuplicates Tracking 14225 as yet unmatched pairs. 10076 records in RAM. INFO 2026-06-04 21:38:58 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chrX:104,166,845 INFO 2026-06-04 21:38:58 MarkDuplicates Tracking 12610 as yet unmatched pairs. 8461 records in RAM. INFO 2026-06-04 21:39:00 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:120,431,437 INFO 2026-06-04 21:39:00 MarkDuplicates Tracking 11343 as yet unmatched pairs. 7194 records in RAM. INFO 2026-06-04 21:39:02 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,211 INFO 2026-06-04 21:39:02 MarkDuplicates Tracking 10331 as yet unmatched pairs. 6182 records in RAM. INFO 2026-06-04 21:39:04 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chrX:153,952,799 INFO 2026-06-04 21:39:04 MarkDuplicates Tracking 7581 as yet unmatched pairs. 3431 records in RAM. INFO 2026-06-04 21:39:05 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chrX:154,535,383 INFO 2026-06-04 21:39:05 MarkDuplicates Tracking 4855 as yet unmatched pairs. 705 records in RAM. INFO 2026-06-04 21:39:07 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,739 INFO 2026-06-04 21:39:07 MarkDuplicates Tracking 1607 as yet unmatched pairs. 131 records in RAM. INFO 2026-06-04 21:39:08 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,514 INFO 2026-06-04 21:39:08 MarkDuplicates Tracking 376 as yet unmatched pairs. 341 records in RAM. INFO 2026-06-04 21:39:08 MarkDuplicates Read 641622683 records. 0 pairs never matched. INFO 2026-06-04 21:39:55 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142416; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:39:55 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-04 21:40:00 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-04 21:40:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:40:11 OpticalDuplicateFinder Large duplicate set. size = 1340 INFO 2026-06-04 21:40:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,365 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,762 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1773 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,397 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1913 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,478 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1273 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,122 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1555 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,710 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1111 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,198 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1245 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,237 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1842 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,943 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-04 21:40:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder Large duplicate set. size = 1570 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,388 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,807 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder Large duplicate set. size = 1785 INFO 2026-06-04 21:40:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,341 INFO 2026-06-04 21:40:28 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-04 21:40:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,846 INFO 2026-06-04 21:40:29 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-04 21:40:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,405 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1794 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,354 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,260 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1383 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,339 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1471 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,263 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,965 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1654 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,311 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,820 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,381 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 2492 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,180 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,715 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1904 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,470 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1336 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,278 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1142 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,003 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1522 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,012 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1195 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,517 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1132 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,651 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,760 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder Large duplicate set. size = 2104 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,273 INFO 2026-06-04 21:40:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,566 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1751 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,138 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1242 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,920 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1862 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,641 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1562 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,562 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,703 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,449 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,758 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1776 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,329 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,946 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1798 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,679 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1157 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,572 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1715 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,627 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1302 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,429 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1405 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,570 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1442 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,553 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,857 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1260 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,442 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,416 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,455 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1383 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,725 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,886 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,232 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1716 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,442 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1198 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,079 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,222 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1649 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,437 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,701 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,948 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,234 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1870 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,673 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,212 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1342 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,571 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 2009 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,282 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,650 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,205 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1494 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,119 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,515 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,374 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1485 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,344 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 2148 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,878 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,451 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1470 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,986 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1443 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,294 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 2256 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,551 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,289 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,436 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,069 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,816 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,595 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1632 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,030 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,534 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,583 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1927 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,175 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1308 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,618 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,265 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1186 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,696 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1534 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,813 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1098 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,245 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1250 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,312 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1977 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,710 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1260 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,266 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,422 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1526 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,328 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder Large duplicate set. size = 1331 INFO 2026-06-04 21:40:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,619 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1267 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,425 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1455 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,938 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1064 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,128 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1270 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,325 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,757 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,842 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,720 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1400 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,508 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1227 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,189 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,606 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1550 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,876 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1497 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,699 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,051 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1119 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,461 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1451 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,099 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1085 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,650 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1169 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,821 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1757 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,676 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,581 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-04 21:40:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,698 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1268 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,038 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,012 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1531 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,411 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,890 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,890 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1332 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,121 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,818 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,967 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-04 21:40:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,049 INFO 2026-06-04 21:40:49 OpticalDuplicateFinder Large duplicate set. size = 1530 INFO 2026-06-04 21:40:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,564 INFO 2026-06-04 21:40:49 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-04 21:40:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,685 INFO 2026-06-04 21:41:10 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-04 21:41:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:42:18 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-04 21:42:28 MarkDuplicates After generateDuplicateIndexes freeMemory: 24784797608; totalMemory: 40735080448; maxMemory: 63585648640 INFO 2026-06-04 21:42:28 MarkDuplicates Marking 259034883 records as duplicates. INFO 2026-06-04 21:42:28 MarkDuplicates Found 19662415 optical duplicate clusters. INFO 2026-06-04 21:42:28 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-04 21:42:45 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:26,280,865 INFO 2026-06-04 21:43:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:47,067,495 INFO 2026-06-04 21:43:20 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:109,172,490 INFO 2026-06-04 21:43:37 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 17s. Last read position: chr1:151,365,769 INFO 2026-06-04 21:43:54 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:164,807,671 INFO 2026-06-04 21:44:11 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr1:206,937,529 INFO 2026-06-04 21:44:29 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 17s. Last read position: chr2:24,067,758 INFO 2026-06-04 21:44:46 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 16s. Last read position: chr2:54,987,585 INFO 2026-06-04 21:45:02 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 16s. Last read position: chr2:108,765,599 INFO 2026-06-04 21:45:20 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 17s. Last read position: chr2:196,872,506 INFO 2026-06-04 21:45:37 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 17s. Last read position: chr2:241,411,096 INFO 2026-06-04 21:45:55 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr3:50,252,124 INFO 2026-06-04 21:46:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 17s. Last read position: chr3:133,574,156 INFO 2026-06-04 21:46:30 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 17s. Last read position: chr3:195,724,847 INFO 2026-06-04 21:46:47 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 17s. Last read position: chr4:44,460,600 INFO 2026-06-04 21:47:05 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 17s. Last read position: chr4:128,287,386 INFO 2026-06-04 21:47:22 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 17s. Last read position: chr5:57,247,191 INFO 2026-06-04 21:47:40 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:12s. Time for last 10,000,000: 17s. Last read position: chr5:138,933,868 INFO 2026-06-04 21:47:58 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 17s. Last read position: chr5:177,631,859 INFO 2026-06-04 21:48:15 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 17s. Last read position: chr6:31,354,243 INFO 2026-06-04 21:48:33 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 17s. Last read position: chr6:56,553,322 INFO 2026-06-04 21:48:50 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:22s. Time for last 10,000,000: 17s. Last read position: chr6:158,771,254 INFO 2026-06-04 21:49:08 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 17s. Last read position: chr7:73,297,614 INFO 2026-06-04 21:49:25 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 17s. Last read position: chr7:100,994,320 INFO 2026-06-04 21:49:42 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 16s. Last read position: chr7:101,001,743 INFO 2026-06-04 21:50:00 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 17s. Last read position: chr7:143,139,552 INFO 2026-06-04 21:50:17 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 17s. Last read position: chr8:42,178,968 INFO 2026-06-04 21:50:35 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:07s. Time for last 10,000,000: 17s. Last read position: chr8:123,253,713 INFO 2026-06-04 21:50:52 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 16s. Last read position: chr8:143,983,454 INFO 2026-06-04 21:51:10 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:41s. Time for last 10,000,000: 17s. Last read position: chr9:95,458,143 INFO 2026-06-04 21:51:27 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 17s. Last read position: chr9:136,505,785 INFO 2026-06-04 21:51:45 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 17s. Last read position: chr10:73,134,687 INFO 2026-06-04 21:52:04 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 19s. Last read position: chr10:122,586,062 INFO 2026-06-04 21:52:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 17s. Last read position: chr11:8,684,883 INFO 2026-06-04 21:52:40 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 18s. Last read position: chr11:62,531,043 INFO 2026-06-04 21:52:58 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 17s. Last read position: chr11:76,526,504 INFO 2026-06-04 21:53:16 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 17s. Last read position: chr12:6,235,255 INFO 2026-06-04 21:53:33 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 17s. Last read position: chr12:53,037,524 INFO 2026-06-04 21:53:51 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 17s. Last read position: chr12:57,230,799 INFO 2026-06-04 21:54:09 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 18s. Last read position: chr12:120,563,860 INFO 2026-06-04 21:54:27 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 17s. Last read position: chr13:102,597,173 INFO 2026-06-04 21:54:45 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 17s. Last read position: chr14:68,790,049 INFO 2026-06-04 21:55:03 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 17s. Last read position: chr14:105,587,621 INFO 2026-06-04 21:55:20 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:51s. Time for last 10,000,000: 16s. Last read position: chr15:22,866,365 INFO 2026-06-04 21:55:37 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 17s. Last read position: chr15:64,499,716 INFO 2026-06-04 21:55:55 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 17s. Last read position: chr16:2,084,682 INFO 2026-06-04 21:56:12 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr16:21,402,238 INFO 2026-06-04 21:56:30 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 17s. Last read position: chr16:30,223,318 INFO 2026-06-04 21:56:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 17s. Last read position: chr16:71,634,609 INFO 2026-06-04 21:57:04 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 17s. Last read position: chr17:7,499,480 INFO 2026-06-04 21:57:21 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 17s. Last read position: chr17:39,662,984 INFO 2026-06-04 21:57:39 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 17s. Last read position: chr17:50,195,946 INFO 2026-06-04 21:57:56 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 17s. Last read position: chr17:78,171,035 INFO 2026-06-04 21:58:14 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 17s. Last read position: chr18:32,018,859 INFO 2026-06-04 21:58:31 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:02s. Time for last 10,000,000: 17s. Last read position: chr19:5,691,328 INFO 2026-06-04 21:58:48 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 17s. Last read position: chr19:18,860,352 INFO 2026-06-04 21:59:05 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 17s. Last read position: chr19:39,879,745 INFO 2026-06-04 21:59:22 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 16s. Last read position: chr19:41,721,036 INFO 2026-06-04 21:59:39 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 17s. Last read position: chr19:55,386,349 INFO 2026-06-04 21:59:57 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 17s. Last read position: chr20:45,949,294 INFO 2026-06-04 22:00:14 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:45s. Time for last 10,000,000: 16s. Last read position: chr21:43,021,325 INFO 2026-06-04 22:00:31 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:03s. Time for last 10,000,000: 17s. Last read position: chr22:38,291,895 INFO 2026-06-04 22:00:49 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:20s. Time for last 10,000,000: 17s. Last read position: chrX:48,707,492 INFO 2026-06-04 22:01:06 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:37s. Time for last 10,000,000: 17s. Last read position: GL000220.1:116,739 INFO 2026-06-04 22:01:18 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-04 22:01:18 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-04 22:01:18 MarkDuplicates Getting Memory Stats. INFO 2026-06-04 22:01:18 MarkDuplicates Before output close freeMemory: 201842624; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 22:01:18 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-04 22:01:18 MarkDuplicates After output close freeMemory: 104067536; totalMemory: 134217728; maxMemory: 63585648640 [Thu Jun 04 22:01:18 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.55 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory