File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/8ae998019d008b0c9d75e0f92721fa/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 11 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 219
  Pass (FILTER=PASS): 53 (24.2%)
  Fail (FILTER=FAIL): 166 (75.8%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 11
  All 11 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 52
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 29
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
  confidence_below_min(low<high): 10
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 10
  confidence_below_min(medium<high);aih_curated_blacklist: 6
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
  total_reads_below_min(7.0<8.0): 1

Breakdown by confidence:
  high: 53 pass, 1 fail (total: 54)
  low: 0 pass, 79 fail (total: 79)
  medium: 0 pass, 86 fail (total: 86)
Arriba filter: 219 rows -> 53 PASS; wrote 659_ePR-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_ePR-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_ePR-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt