Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/5e48cccefec862234ecff07be7f840/659_bjQ-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/50504c8a5ef760cfc3d768d808f5fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/50504c8a5ef760cfc3d768d808f5fe/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/90542906c0ea62ab952d64eb901c2d/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bjQ-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bjQ-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bjQ-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bjQ-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 133.4 bp
  Median Fragment Length: 123.0 bp
  pct_mito_est_counts: 0.016%
  pct_ribo_est_counts: 0.614%
  pct_hk_est_counts: 0.485%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.04%
  pct_ribo_tpm: 2.048%
  pct_hk_tpm: 0.748%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.834%