Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/ac657a900582274dbae9ad0849c364/659_c95-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1e5a616a5a8e9139a2c2b78cb9687b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1e5a616a5a8e9139a2c2b78cb9687b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory