File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/2b6a2c195937ba932509d914f4c7ab/.command.log
Size
9.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_b7Z-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/81c918fce55d461b1c6646ba5fd147/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/2b6a2c195937ba932509d914f4c7ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/2b6a2c195937ba932509d914f4c7ab/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/5f15f2a4b1e037d955180aa5c2c0cb/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--FAR2
starfusion
arriba
TLK2--AC240565.1
starfusion
FSIP1--AC013652.1
starfusion
arriba
CDK19--RPF2
starfusion
arriba
CFLAR-AS1--PIP5K1B
starfusion
RPF2--CDK19
starfusion
arriba
AC124944.2--SDHAP1
starfusion
AGAP12P--FRMPD2
starfusion
FBXO25--AC240565.1
starfusion
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
HGD--GTF2E1
arriba
LINC00993--PVT1
arriba
TVP23C--CDRT4
arriba
CDKN2A--CDKN2A
arriba
STX16--NPEPL1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
ATIC--AC092844.1
arriba
AC015911.9--SLFN12L
arriba
CRYZL2P--SEC16B
arriba
CCDC169--SOHLH2
arriba
KLRC4--KLRK1
arriba
DUOX1--DUOX1
arriba
TLK2--LINC01347
arriba

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Processing ETV6--FAR2:   0%|          | 0/44 [00:00<?, ?it/s]
Processing ETV6--FAR2:   2%|▏         | 1/44 [00:00<00:04,  9.23it/s]
Processing TLK2--AC240565.1:   2%|▏         | 1/44 [00:00<00:04,  9.23it/s]
Processing TLK2--AC240565.1:   5%|▍         | 2/44 [00:00<00:04,  9.47it/s]
Processing FSIP1--AC013652.1:   5%|▍         | 2/44 [00:00<00:04,  9.47it/s]
Processing FSIP1--AC013652.1:   7%|▋         | 3/44 [00:00<00:04,  9.55it/s]
Processing CDK19--RPF2:   7%|▋         | 3/44 [00:00<00:04,  9.55it/s]      
Processing CDK19--RPF2:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing CFLAR-AS1--PIP5K1B:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing CFLAR-AS1--PIP5K1B:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]
Processing RPF2--CDK19:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]       
Processing RPF2--CDK19:  14%|█▎        | 6/44 [00:00<00:03,  9.62it/s]
Processing AC124944.2--SDHAP1:  14%|█▎        | 6/44 [00:00<00:03,  9.62it/s]
Processing AC124944.2--SDHAP1:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]
Processing AGAP12P--FRMPD2:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]   
Processing AGAP12P--FRMPD2:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing FBXO25--AC240565.1:  18%|█▊        | 8/44 [00:00<00:03,  9.64it/s]
Processing FBXO25--AC240565.1:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]  
Processing PCDHGA5--PCDHGA8:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  25%|██▌       | 11/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  27%|██▋       | 12/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  30%|██▉       | 13/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGC3:  32%|███▏      | 14/44 [00:01<00:03,  9.65it/s] 
Processing PCDHGA5--PCDHGC3:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  34%|███▍      | 15/44 [00:01<00:03,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGB7:  36%|███▋      | 16/44 [00:01<00:02,  9.65it/s] 
Processing PCDHGA5--PCDHGB7:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA9:  39%|███▊      | 17/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA9:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  41%|████      | 18/44 [00:01<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  43%|████▎     | 19/44 [00:01<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGA8:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  45%|████▌     | 20/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  48%|████▊     | 21/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  50%|█████     | 22/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  52%|█████▏    | 23/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  52%|█████▏    | 23/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  55%|█████▍    | 24/44 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  55%|█████▍    | 24/44 [00:02<00:02,  9.65it/s] 
Processing PCDHGB2--PCDHGC3:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  57%|█████▋    | 25/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  59%|█████▉    | 26/44 [00:02<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  61%|██████▏   | 27/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▎   | 28/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  64%|██████▎   | 28/44 [00:02<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s]
Processing HGD--GTF2E1:  66%|██████▌   | 29/44 [00:03<00:01,  9.65it/s]      
Processing HGD--GTF2E1:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]
Processing LINC00993--PVT1:  68%|██████▊   | 30/44 [00:03<00:01,  9.65it/s]
Processing LINC00993--PVT1:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  70%|███████   | 31/44 [00:03<00:01,  9.65it/s]  
Processing TVP23C--CDRT4:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing CDKN2A--CDKN2A:  73%|███████▎  | 32/44 [00:03<00:01,  9.65it/s]
Processing CDKN2A--CDKN2A:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s]
Processing STX16--NPEPL1:  75%|███████▌  | 33/44 [00:03<00:01,  9.65it/s] 
Processing STX16--NPEPL1:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  77%|███████▋  | 34/44 [00:03<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC1:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  80%|███████▉  | 35/44 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  82%|████████▏ | 36/44 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  82%|████████▏ | 36/44 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  84%|████████▍ | 37/44 [00:03<00:00,  9.65it/s]
Processing ATIC--AC092844.1:  84%|████████▍ | 37/44 [00:03<00:00,  9.65it/s]
Processing ATIC--AC092844.1:  86%|████████▋ | 38/44 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  86%|████████▋ | 38/44 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  89%|████████▊ | 39/44 [00:04<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  89%|████████▊ | 39/44 [00:04<00:00,  9.65it/s]    
Processing CRYZL2P--SEC16B:  91%|█████████ | 40/44 [00:04<00:00,  9.65it/s]
Processing CCDC169--SOHLH2:  91%|█████████ | 40/44 [00:04<00:00,  9.65it/s]
Processing CCDC169--SOHLH2:  93%|█████████▎| 41/44 [00:04<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  93%|█████████▎| 41/44 [00:04<00:00,  9.65it/s]   
Processing KLRC4--KLRK1:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s]
Processing DUOX1--DUOX1:  95%|█████████▌| 42/44 [00:04<00:00,  9.65it/s]
Processing DUOX1--DUOX1:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347:  98%|█████████▊| 43/44 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347: 100%|██████████| 44/44 [00:04<00:00,  9.65it/s]
Processing TLK2--LINC01347: 100%|██████████| 44/44 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory