AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 147
Pass (FILTER=PASS): 17 (11.6%)
Fail (FILTER=FAIL): 130 (88.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 27
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 16
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 16
confidence_below_min(medium<high): 14
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 12
confidence_below_min(low<high): 8
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 2
total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
Breakdown by confidence:
high: 17 pass, 6 fail (total: 23)
low: 0 pass, 60 fail (total: 60)
medium: 0 pass, 64 fail (total: 64)
Arriba filter: 147 rows -> 17 PASS; wrote 659_bCu-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_bCu-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_bCu-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt