Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/965bf9aee2c63a0aaece6dd9ab86a9/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/d721a42f138067c9d5bde9fbbed1f0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/d721a42f138067c9d5bde9fbbed1f0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae1964fa9d2678385b142b0da0b910/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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