File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/8fed94442a4123416eec9b5b4b3712/.command.log
Size
11.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bNS-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/8dbbb8eb6f1816be6a931b6480eec0/659_bNS-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/8fed94442a4123416eec9b5b4b3712/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/8fed94442a4123416eec9b5b4b3712/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/a092a2375f94e353a9c1477b25c492/659_bNS-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
EML4--ALK
starfusion
arriba
SNTB2--TANGO6
starfusion
arriba
FBXO25--AL669831.1
starfusion
TMEM120B--ORAI1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGC3
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGC3
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/51 [00:00<?, ?it/s]
Processing EML4--ALK:   0%|          | 0/51 [00:00<?, ?it/s]
Processing EML4--ALK:   2%|▏         | 1/51 [00:00<00:05,  9.23it/s]
Processing SNTB2--TANGO6:   2%|▏         | 1/51 [00:00<00:05,  9.23it/s]
Processing SNTB2--TANGO6:   4%|▍         | 2/51 [00:00<00:05,  9.47it/s]
Processing FBXO25--AL669831.1:   4%|▍         | 2/51 [00:00<00:05,  9.47it/s]
Processing FBXO25--AL669831.1:   6%|▌         | 3/51 [00:00<00:05,  9.55it/s]
Processing TMEM120B--ORAI1:   6%|▌         | 3/51 [00:00<00:05,  9.55it/s]   
Processing TMEM120B--ORAI1:   8%|▊         | 4/51 [00:00<00:04,  9.59it/s]
Processing PCDHGB2--PCDHGA8:   8%|▊         | 4/51 [00:00<00:04,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  10%|▉         | 5/51 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  10%|▉         | 5/51 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  12%|█▏        | 6/51 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC5:  12%|█▏        | 6/51 [00:00<00:04,  9.62it/s] 
Processing PCDHGB2--PCDHGC5:  14%|█▎        | 7/51 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  14%|█▎        | 7/51 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  16%|█▌        | 8/51 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  16%|█▌        | 8/51 [00:00<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  18%|█▊        | 9/51 [00:00<00:04,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  18%|█▊        | 9/51 [00:00<00:04,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  20%|█▉        | 10/51 [00:01<00:04,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  20%|█▉        | 10/51 [00:01<00:04,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  22%|██▏       | 11/51 [00:01<00:04,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  22%|██▏       | 11/51 [00:01<00:04,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  24%|██▎       | 12/51 [00:01<00:04,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  24%|██▎       | 12/51 [00:01<00:04,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  25%|██▌       | 13/51 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  25%|██▌       | 13/51 [00:01<00:03,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  27%|██▋       | 14/51 [00:01<00:03,  9.65it/s]
Processing IGFL1P2--HIF3A:  27%|██▋       | 14/51 [00:01<00:03,  9.65it/s]  
Processing IGFL1P2--HIF3A:  29%|██▉       | 15/51 [00:01<00:03,  9.65it/s]
Processing TVP23C--CDRT4:  29%|██▉       | 15/51 [00:01<00:03,  9.65it/s] 
Processing TVP23C--CDRT4:  31%|███▏      | 16/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA8:  31%|███▏      | 16/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA8:  33%|███▎      | 17/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA10:  33%|███▎      | 17/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA10:  35%|███▌      | 18/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGC5:  35%|███▌      | 18/51 [00:01<00:03,  9.65it/s] 
Processing PCDHGA6--PCDHGC5:  37%|███▋      | 19/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGB6:  37%|███▋      | 19/51 [00:01<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGB6:  39%|███▉      | 20/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGC4:  39%|███▉      | 20/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGC4:  41%|████      | 21/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGB7:  41%|████      | 21/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGB7:  43%|████▎     | 22/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA11:  43%|████▎     | 22/51 [00:02<00:03,  9.65it/s]
Processing PCDHGA6--PCDHGA11:  45%|████▌     | 23/51 [00:02<00:02,  9.65it/s]
Processing PCDHGA6--PCDHGA12:  45%|████▌     | 23/51 [00:02<00:02,  9.65it/s]
Processing PCDHGA6--PCDHGA12:  47%|████▋     | 24/51 [00:02<00:02,  9.65it/s]
Processing PCDHGA6--PCDHGA9:  47%|████▋     | 24/51 [00:02<00:02,  9.65it/s] 
Processing PCDHGA6--PCDHGA9:  49%|████▉     | 25/51 [00:02<00:02,  9.65it/s]
Processing PCDHGA6--PCDHGC3:  49%|████▉     | 25/51 [00:02<00:02,  9.65it/s]
Processing PCDHGA6--PCDHGC3:  51%|█████     | 26/51 [00:02<00:02,  9.65it/s]
Processing PCDHA6--PCDHAC2:  51%|█████     | 26/51 [00:02<00:02,  9.65it/s] 
Processing PCDHA6--PCDHAC2:  53%|█████▎    | 27/51 [00:02<00:02,  9.65it/s]
Processing PCDHA6--PCDHA13:  53%|█████▎    | 27/51 [00:02<00:02,  9.65it/s]
Processing PCDHA6--PCDHA13:  55%|█████▍    | 28/51 [00:02<00:02,  9.65it/s]
Processing PCDHA6--PCDHAC1:  55%|█████▍    | 28/51 [00:02<00:02,  9.65it/s]
Processing PCDHA6--PCDHAC1:  57%|█████▋    | 29/51 [00:03<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA8:  57%|█████▋    | 29/51 [00:03<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA8:  59%|█████▉    | 30/51 [00:03<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  59%|█████▉    | 30/51 [00:03<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGA10:  61%|██████    | 31/51 [00:03<00:02,  9.65it/s]
Processing PCDHGA5--PCDHGC5:  61%|██████    | 31/51 [00:03<00:02,  9.65it/s] 
Processing PCDHGA5--PCDHGC5:  63%|██████▎   | 32/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  63%|██████▎   | 32/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGB6:  65%|██████▍   | 33/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  65%|██████▍   | 33/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC4:  67%|██████▋   | 34/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGB7:  67%|██████▋   | 34/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGB7:  69%|██████▊   | 35/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  69%|██████▊   | 35/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGA11:  71%|███████   | 36/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  71%|███████   | 36/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGA12:  73%|███████▎  | 37/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGA9:  73%|███████▎  | 37/51 [00:03<00:01,  9.65it/s] 
Processing PCDHGA5--PCDHGA9:  75%|███████▍  | 38/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC3:  75%|███████▍  | 38/51 [00:03<00:01,  9.65it/s]
Processing PCDHGA5--PCDHGC3:  76%|███████▋  | 39/51 [00:04<00:01,  9.65it/s]
Processing PCDHGA2--PCDHGA8:  76%|███████▋  | 39/51 [00:04<00:01,  9.65it/s]
Processing PCDHGA2--PCDHGA8:  78%|███████▊  | 40/51 [00:04<00:01,  9.65it/s]
Processing PCDHGA2--PCDHGA10:  78%|███████▊  | 40/51 [00:04<00:01,  9.65it/s]
Processing PCDHGA2--PCDHGA10:  80%|████████  | 41/51 [00:04<00:01,  9.65it/s]
Processing PCDHGA2--PCDHGC5:  80%|████████  | 41/51 [00:04<00:01,  9.65it/s] 
Processing PCDHGA2--PCDHGC5:  82%|████████▏ | 42/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGB6:  82%|████████▏ | 42/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGB6:  84%|████████▍ | 43/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGC4:  84%|████████▍ | 43/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGC4:  86%|████████▋ | 44/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGB7:  86%|████████▋ | 44/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGB7:  88%|████████▊ | 45/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGA11:  88%|████████▊ | 45/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGA11:  90%|█████████ | 46/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGA12:  90%|█████████ | 46/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGA12:  92%|█████████▏| 47/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGA9:  92%|█████████▏| 47/51 [00:04<00:00,  9.65it/s] 
Processing PCDHGA2--PCDHGA9:  94%|█████████▍| 48/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGC3:  94%|█████████▍| 48/51 [00:04<00:00,  9.65it/s]
Processing PCDHGA2--PCDHGC3:  96%|█████████▌| 49/51 [00:05<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  96%|█████████▌| 49/51 [00:05<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  98%|█████████▊| 50/51 [00:05<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  98%|█████████▊| 50/51 [00:05<00:00,  9.65it/s]     
Processing KLRC4--KLRK1: 100%|██████████| 51/51 [00:05<00:00,  9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 51/51 [00:05<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory