Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/d740b7b5aed1cda3f44c72af5d6d4d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/5e6db1165b7fd12c35ab76c4569de3/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/d740b7b5aed1cda3f44c72af5d6d4d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/282e3130ec2b5936f2c532e47d0011/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 374284265
[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	374284265
Known Splicing Events:	371683317
Partial Novel Splicing Events:	1436633
Novel Splicing Events:	1074421
Filtered Splicing Events:	89894

Total splicing  Junctions:	622171
Known Splicing Junctions:	291087
Partial Novel Splicing Junctions:	173557
Novel Splicing Junctions:	157527

===================================================================
Create BED file ...
Create Interact file ...