Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/965bf9aee2c63a0aaece6dd9ab86a9/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/0bbc1efb846c6b59acf50982fda0c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/0bbc1efb846c6b59acf50982fda0c5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae1964fa9d2678385b142b0da0b910/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 279985322
[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	279985322
Known Splicing Events:	277313700
Partial Novel Splicing Events:	1405564
Novel Splicing Events:	1190910
Filtered Splicing Events:	75148

Total splicing  Junctions:	510597
Known Splicing Junctions:	272697
Partial Novel Splicing Junctions:	141061
Novel Splicing Junctions:	96839

===================================================================
Create BED file ...
Create Interact file ...