Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/3e0be0df34b7916fa8fd5096bdb7ca/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/22ca4d9eec24304e1af7f944479df1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/8d52a696f2d6eb77e90f5554a244b2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/22ca4d9eec24304e1af7f944479df1/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 143445537
[W::hts_idx_load3] The index file is older than the data file: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	143445537
Known Splicing Events:	141942314
Partial Novel Splicing Events:	685536
Novel Splicing Events:	747815
Filtered Splicing Events:	69872

Total splicing  Junctions:	228741
Known Splicing Junctions:	181927
Partial Novel Splicing Junctions:	26013
Novel Splicing Junctions:	20801

===================================================================
Create BED file ...
Create Interact file ...