Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/cc6c851fa6959940a08a0e745fa4ad/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/cc6c851fa6959940a08a0e745fa4ad/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/eb824982e27e97c34f20e506a6ef28/659_bR4-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/395701c6c6dff7379be6553885c4ff/659_bR4-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bR4-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bR4-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bR4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bR4-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 135.9 bp
  Median Fragment Length: 125.0 bp
  pct_mito_est_counts: 0.007%
  pct_ribo_est_counts: 1.059%
  pct_hk_est_counts: 0.563%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.015%
  pct_ribo_tpm: 3.3%
  pct_hk_tpm: 0.798%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.017%