Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/d9f35a84c74eca73f1d6f346f6701a/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/b431d6a77b6b82c07097016ce2370c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/b431d6a77b6b82c07097016ce2370c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a15f0a3173a89e99e0e7a9b36c32a0/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1