Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ae2bba881af4c878c6415f950800a2/659_bTo-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/bb6ba2168c93f68c8a72352c0f4fbc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/82a54590e4527d6a0f6fe68ce84269/659_bTo-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/bb6ba2168c93f68c8a72352c0f4fbc/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--RASA3
starfusion
arriba
ANKRD46--STK3
starfusion
arriba
UBE2O--AANAT
starfusion
arriba
FHOD3--KIAA1328
starfusion
arriba
RIOK3--LINC01894
starfusion
TOPORS--TJP2
starfusion
UST--TMTC2
starfusion
arriba
RPSAP52--HMGA2
starfusion
NF1--SEPTIN4-AS1
starfusion
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC3
arriba
AKAP12--PHBP1
arriba
AKAP12--ULBP3
arriba
AC092807.3--DDAH1
arriba
STX16--NPEPL1
arriba
TMED7--TICAM2
arriba
LANCL2--LANCL2
arriba
AC010904.1--ZC3H7B
arriba
AC013460.1--ZC3H7B
arriba
TAF4B--B4GALT6
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing ETV6--RASA3:   0%|          | 0/28 [00:00<?, ?it/s]
Processing ETV6--RASA3:   4%|▎         | 1/28 [00:00<00:02,  9.24it/s]
Processing ANKRD46--STK3:   4%|▎         | 1/28 [00:00<00:02,  9.24it/s]
Processing ANKRD46--STK3:   7%|▋         | 2/28 [00:00<00:02,  9.48it/s]
Processing UBE2O--AANAT:   7%|▋         | 2/28 [00:00<00:02,  9.48it/s] 
Processing UBE2O--AANAT:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing FHOD3--KIAA1328:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing FHOD3--KIAA1328:  14%|█▍        | 4/28 [00:00<00:02,  9.59it/s]
Processing RIOK3--LINC01894:  14%|█▍        | 4/28 [00:00<00:02,  9.59it/s]
Processing RIOK3--LINC01894:  18%|█▊        | 5/28 [00:00<00:02,  9.61it/s]
Processing TOPORS--TJP2:  18%|█▊        | 5/28 [00:00<00:02,  9.61it/s]    
Processing TOPORS--TJP2:  21%|██▏       | 6/28 [00:00<00:02,  9.63it/s]
Processing UST--TMTC2:  21%|██▏       | 6/28 [00:00<00:02,  9.63it/s]  
Processing UST--TMTC2:  25%|██▌       | 7/28 [00:00<00:02,  9.63it/s]
Processing RPSAP52--HMGA2:  25%|██▌       | 7/28 [00:00<00:02,  9.63it/s]
Processing RPSAP52--HMGA2:  29%|██▊       | 8/28 [00:00<00:02,  9.64it/s]
Processing NF1--SEPTIN4-AS1:  29%|██▊       | 8/28 [00:00<00:02,  9.64it/s]
Processing NF1--SEPTIN4-AS1:  32%|███▏      | 9/28 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  32%|███▏      | 9/28 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  36%|███▌      | 10/28 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  36%|███▌      | 10/28 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  39%|███▉      | 11/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  39%|███▉      | 11/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  43%|████▎     | 12/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  43%|████▎     | 12/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC4:  46%|████▋     | 13/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  46%|████▋     | 13/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  50%|█████     | 14/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  50%|█████     | 14/28 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  54%|█████▎    | 15/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  54%|█████▎    | 15/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  57%|█████▋    | 16/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  57%|█████▋    | 16/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  61%|██████    | 17/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGB7:  61%|██████    | 17/28 [00:01<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGB7:  64%|██████▍   | 18/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  64%|██████▍   | 18/28 [00:01<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 19/28 [00:01<00:00,  9.65it/s]
Processing AKAP12--PHBP1:  68%|██████▊   | 19/28 [00:01<00:00,  9.65it/s]   
Processing AKAP12--PHBP1:  71%|███████▏  | 20/28 [00:02<00:00,  9.65it/s]
Processing AKAP12--ULBP3:  71%|███████▏  | 20/28 [00:02<00:00,  9.65it/s]
Processing AKAP12--ULBP3:  75%|███████▌  | 21/28 [00:02<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 21/28 [00:02<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  79%|███████▊  | 22/28 [00:02<00:00,  9.65it/s]
Processing STX16--NPEPL1:  79%|███████▊  | 22/28 [00:02<00:00,  9.65it/s]    
Processing STX16--NPEPL1:  82%|████████▏ | 23/28 [00:02<00:00,  9.65it/s]
Processing TMED7--TICAM2:  82%|████████▏ | 23/28 [00:02<00:00,  9.65it/s]
Processing TMED7--TICAM2:  86%|████████▌ | 24/28 [00:02<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  86%|████████▌ | 24/28 [00:02<00:00,  9.65it/s]
Processing LANCL2--LANCL2:  89%|████████▉ | 25/28 [00:02<00:00,  9.65it/s]
Processing AC010904.1--ZC3H7B:  89%|████████▉ | 25/28 [00:02<00:00,  9.65it/s]
Processing AC010904.1--ZC3H7B:  93%|█████████▎| 26/28 [00:02<00:00,  9.65it/s]
Processing AC013460.1--ZC3H7B:  93%|█████████▎| 26/28 [00:02<00:00,  9.65it/s]
Processing AC013460.1--ZC3H7B:  96%|█████████▋| 27/28 [00:02<00:00,  9.65it/s]
Processing TAF4B--B4GALT6:  96%|█████████▋| 27/28 [00:02<00:00,  9.65it/s]    
Processing TAF4B--B4GALT6: 100%|██████████| 28/28 [00:02<00:00,  9.65it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 28/28 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory