Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 21:13:46.646 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Thu Jun 04 21:13:46 GMT 2026] MarkDuplicates --INPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu Jun 04 21:13:46 GMT 2026] Executing as ?@nf-3379ff560e472718a2b9b15be749550f-85149-nrr8k on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-04 21:13:46 MarkDuplicates Start of doWork freeMemory: 105827440; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-04 21:13:46 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-04 21:13:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-04 21:13:50 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,232,830 INFO 2026-06-04 21:13:50 MarkDuplicates Tracking 2087 as yet unmatched pairs. 33 records in RAM. INFO 2026-06-04 21:13:52 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,646,057 INFO 2026-06-04 21:13:52 MarkDuplicates Tracking 4454 as yet unmatched pairs. 271 records in RAM. INFO 2026-06-04 21:13:53 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:6,532,669 INFO 2026-06-04 21:13:53 MarkDuplicates Tracking 6244 as yet unmatched pairs. 139 records in RAM. INFO 2026-06-04 21:13:55 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,364,824 INFO 2026-06-04 21:13:55 MarkDuplicates Tracking 8011 as yet unmatched pairs. 157 records in RAM. INFO 2026-06-04 21:13:57 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:10,119,588 INFO 2026-06-04 21:13:57 MarkDuplicates Tracking 9994 as yet unmatched pairs. 169 records in RAM. INFO 2026-06-04 21:13:59 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:11,964,706 INFO 2026-06-04 21:13:59 MarkDuplicates Tracking 12782 as yet unmatched pairs. 1003 records in RAM. INFO 2026-06-04 21:14:01 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:15,932,041 INFO 2026-06-04 21:14:01 MarkDuplicates Tracking 13797 as yet unmatched pairs. 154 records in RAM. INFO 2026-06-04 21:14:02 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:19,096,544 INFO 2026-06-04 21:14:02 MarkDuplicates Tracking 15716 as yet unmatched pairs. 295 records in RAM. INFO 2026-06-04 21:14:04 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:20,637,939 INFO 2026-06-04 21:14:04 MarkDuplicates Tracking 17799 as yet unmatched pairs. 375 records in RAM. INFO 2026-06-04 21:14:05 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,844,265 INFO 2026-06-04 21:14:05 MarkDuplicates Tracking 19435 as yet unmatched pairs. 196 records in RAM. INFO 2026-06-04 21:14:07 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,254 INFO 2026-06-04 21:14:07 MarkDuplicates Tracking 22523 as yet unmatched pairs. 1400 records in RAM. INFO 2026-06-04 21:14:09 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:24,669,223 INFO 2026-06-04 21:14:09 MarkDuplicates Tracking 23084 as yet unmatched pairs. 198 records in RAM. INFO 2026-06-04 21:14:11 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:26,772,953 INFO 2026-06-04 21:14:11 MarkDuplicates Tracking 24929 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-04 21:14:13 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:28,150,706 INFO 2026-06-04 21:14:13 MarkDuplicates Tracking 26491 as yet unmatched pairs. 54 records in RAM. INFO 2026-06-04 21:14:15 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:31,668,829 INFO 2026-06-04 21:14:15 MarkDuplicates Tracking 29531 as yet unmatched pairs. 1196 records in RAM. INFO 2026-06-04 21:14:17 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:32,366,611 INFO 2026-06-04 21:14:17 MarkDuplicates Tracking 30790 as yet unmatched pairs. 396 records in RAM. INFO 2026-06-04 21:14:19 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,636 INFO 2026-06-04 21:14:19 MarkDuplicates Tracking 33709 as yet unmatched pairs. 1409 records in RAM. INFO 2026-06-04 21:14:20 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:36,455,847 INFO 2026-06-04 21:14:20 MarkDuplicates Tracking 34366 as yet unmatched pairs. 263 records in RAM. INFO 2026-06-04 21:14:23 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:39,447,818 INFO 2026-06-04 21:14:23 MarkDuplicates Tracking 36864 as yet unmatched pairs. 857 records in RAM. INFO 2026-06-04 21:14:24 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:41,580,185 INFO 2026-06-04 21:14:24 MarkDuplicates Tracking 37917 as yet unmatched pairs. 128 records in RAM. INFO 2026-06-04 21:14:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,971,092 INFO 2026-06-04 21:14:26 MarkDuplicates Tracking 39861 as yet unmatched pairs. 153 records in RAM. INFO 2026-06-04 21:14:27 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:46,032,238 INFO 2026-06-04 21:14:27 MarkDuplicates Tracking 41967 as yet unmatched pairs. 305 records in RAM. INFO 2026-06-04 21:14:28 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:52,353,630 INFO 2026-06-04 21:14:28 MarkDuplicates Tracking 43822 as yet unmatched pairs. 263 records in RAM. INFO 2026-06-04 21:14:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,937 INFO 2026-06-04 21:14:30 MarkDuplicates Tracking 45719 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-04 21:14:32 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:67,424,249 INFO 2026-06-04 21:14:32 MarkDuplicates Tracking 49443 as yet unmatched pairs. 2263 records in RAM. INFO 2026-06-04 21:14:34 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:78,662,738 INFO 2026-06-04 21:14:34 MarkDuplicates Tracking 50679 as yet unmatched pairs. 1736 records in RAM. INFO 2026-06-04 21:14:36 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:86,031,877 INFO 2026-06-04 21:14:36 MarkDuplicates Tracking 50788 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-04 21:14:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:93,210,823 INFO 2026-06-04 21:14:37 MarkDuplicates Tracking 52669 as yet unmatched pairs. 111 records in RAM. INFO 2026-06-04 21:14:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:102,878,047 INFO 2026-06-04 21:14:39 MarkDuplicates Tracking 55184 as yet unmatched pairs. 852 records in RAM. INFO 2026-06-04 21:14:40 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:109,397,769 INFO 2026-06-04 21:14:40 MarkDuplicates Tracking 56057 as yet unmatched pairs. 65 records in RAM. INFO 2026-06-04 21:14:42 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:112,688,968 INFO 2026-06-04 21:14:42 MarkDuplicates Tracking 58253 as yet unmatched pairs. 389 records in RAM. INFO 2026-06-04 21:14:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:114,405,680 INFO 2026-06-04 21:14:44 MarkDuplicates Tracking 60215 as yet unmatched pairs. 483 records in RAM. INFO 2026-06-04 21:14:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:118,884,820 INFO 2026-06-04 21:14:45 MarkDuplicates Tracking 61966 as yet unmatched pairs. 440 records in RAM. INFO 2026-06-04 21:14:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:119,940,579 INFO 2026-06-04 21:14:47 MarkDuplicates Tracking 63963 as yet unmatched pairs. 555 records in RAM. INFO 2026-06-04 21:14:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:120,813,967 INFO 2026-06-04 21:14:49 MarkDuplicates Tracking 65289 as yet unmatched pairs. 354 records in RAM. INFO 2026-06-04 21:14:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:145,900,159 INFO 2026-06-04 21:14:50 MarkDuplicates Tracking 66043 as yet unmatched pairs. 141 records in RAM. INFO 2026-06-04 21:14:52 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:147,179,139 INFO 2026-06-04 21:14:52 MarkDuplicates Tracking 66943 as yet unmatched pairs. 296 records in RAM. INFO 2026-06-04 21:14:53 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:148,615,803 INFO 2026-06-04 21:14:53 MarkDuplicates Tracking 68730 as yet unmatched pairs. 1387 records in RAM. INFO 2026-06-04 21:14:55 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,281 INFO 2026-06-04 21:14:55 MarkDuplicates Tracking 69495 as yet unmatched pairs. 1081 records in RAM. INFO 2026-06-04 21:14:57 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,364,656 INFO 2026-06-04 21:14:57 MarkDuplicates Tracking 69897 as yet unmatched pairs. 71 records in RAM. INFO 2026-06-04 21:14:58 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:150,836,397 INFO 2026-06-04 21:14:58 MarkDuplicates Tracking 72079 as yet unmatched pairs. 383 records in RAM. INFO 2026-06-04 21:15:00 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:152,213,641 INFO 2026-06-04 21:15:00 MarkDuplicates Tracking 73926 as yet unmatched pairs. 508 records in RAM. INFO 2026-06-04 21:15:02 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,936,713 INFO 2026-06-04 21:15:02 MarkDuplicates Tracking 75022 as yet unmatched pairs. 136 records in RAM. INFO 2026-06-04 21:15:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,049 INFO 2026-06-04 21:15:04 MarkDuplicates Tracking 77087 as yet unmatched pairs. 465 records in RAM. INFO 2026-06-04 21:15:05 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,967,984 INFO 2026-06-04 21:15:05 MarkDuplicates Tracking 80149 as yet unmatched pairs. 1683 records in RAM. INFO 2026-06-04 21:15:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,717,106 INFO 2026-06-04 21:15:07 MarkDuplicates Tracking 81538 as yet unmatched pairs. 1338 records in RAM. INFO 2026-06-04 21:15:08 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,130,643 INFO 2026-06-04 21:15:08 MarkDuplicates Tracking 93293 as yet unmatched pairs. 11059 records in RAM. INFO 2026-06-04 21:15:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,802 INFO 2026-06-04 21:15:10 MarkDuplicates Tracking 87978 as yet unmatched pairs. 3570 records in RAM. INFO 2026-06-04 21:15:11 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,672,488 INFO 2026-06-04 21:15:11 MarkDuplicates Tracking 87442 as yet unmatched pairs. 1228 records in RAM. INFO 2026-06-04 21:15:13 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:158,087,836 INFO 2026-06-04 21:15:13 MarkDuplicates Tracking 88975 as yet unmatched pairs. 779 records in RAM. INFO 2026-06-04 21:15:14 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:160,332,465 INFO 2026-06-04 21:15:14 MarkDuplicates Tracking 91153 as yet unmatched pairs. 1162 records in RAM. INFO 2026-06-04 21:15:15 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,576 INFO 2026-06-04 21:15:15 MarkDuplicates Tracking 96061 as yet unmatched pairs. 4214 records in RAM. INFO 2026-06-04 21:15:17 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:166,858,121 INFO 2026-06-04 21:15:17 MarkDuplicates Tracking 93625 as yet unmatched pairs. 109 records in RAM. INFO 2026-06-04 21:15:19 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,544 INFO 2026-06-04 21:15:19 MarkDuplicates Tracking 97320 as yet unmatched pairs. 2123 records in RAM. INFO 2026-06-04 21:15:20 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:178,458,387 INFO 2026-06-04 21:15:20 MarkDuplicates Tracking 97075 as yet unmatched pairs. 93 records in RAM. INFO 2026-06-04 21:15:22 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:182,603,256 INFO 2026-06-04 21:15:22 MarkDuplicates Tracking 100345 as yet unmatched pairs. 1392 records in RAM. INFO 2026-06-04 21:15:23 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:184,708,275 INFO 2026-06-04 21:15:23 MarkDuplicates Tracking 101371 as yet unmatched pairs. 487 records in RAM. INFO 2026-06-04 21:15:25 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:186,306,880 INFO 2026-06-04 21:15:25 MarkDuplicates Tracking 105573 as yet unmatched pairs. 3205 records in RAM. INFO 2026-06-04 21:15:26 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:186,307,338 INFO 2026-06-04 21:15:26 MarkDuplicates Tracking 106754 as yet unmatched pairs. 3390 records in RAM. INFO 2026-06-04 21:15:28 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:186,308,488 INFO 2026-06-04 21:15:28 MarkDuplicates Tracking 105931 as yet unmatched pairs. 1424 records in RAM. INFO 2026-06-04 21:15:29 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:186,350,325 INFO 2026-06-04 21:15:29 MarkDuplicates Tracking 107546 as yet unmatched pairs. 1513 records in RAM. INFO 2026-06-04 21:15:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:196,726,489 INFO 2026-06-04 21:15:31 MarkDuplicates Tracking 110029 as yet unmatched pairs. 2291 records in RAM. INFO 2026-06-04 21:15:32 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:201,809,984 INFO 2026-06-04 21:15:32 MarkDuplicates Tracking 109625 as yet unmatched pairs. 133 records in RAM. INFO 2026-06-04 21:15:34 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:203,800,013 INFO 2026-06-04 21:15:34 MarkDuplicates Tracking 112495 as yet unmatched pairs. 1258 records in RAM. INFO 2026-06-04 21:15:36 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:206,406,511 INFO 2026-06-04 21:15:36 MarkDuplicates Tracking 113262 as yet unmatched pairs. 442 records in RAM. INFO 2026-06-04 21:15:37 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:214,642,283 INFO 2026-06-04 21:15:37 MarkDuplicates Tracking 114803 as yet unmatched pairs. 165 records in RAM. INFO 2026-06-04 21:15:38 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:223,747,075 INFO 2026-06-04 21:15:38 MarkDuplicates Tracking 116654 as yet unmatched pairs. 212 records in RAM. INFO 2026-06-04 21:15:40 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:226,736,653 INFO 2026-06-04 21:15:40 MarkDuplicates Tracking 118348 as yet unmatched pairs. 162 records in RAM. INFO 2026-06-04 21:15:41 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:231,528,802 INFO 2026-06-04 21:15:41 MarkDuplicates Tracking 120748 as yet unmatched pairs. 454 records in RAM. INFO 2026-06-04 21:15:44 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:235,664,466 INFO 2026-06-04 21:15:44 MarkDuplicates Tracking 122354 as yet unmatched pairs. 81 records in RAM. INFO 2026-06-04 21:15:45 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:243,200,548 INFO 2026-06-04 21:15:45 MarkDuplicates Tracking 124761 as yet unmatched pairs. 596 records in RAM. INFO 2026-06-04 21:15:47 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:246,744,108 INFO 2026-06-04 21:15:47 MarkDuplicates Tracking 126147 as yet unmatched pairs. 135 records in RAM. INFO 2026-06-04 21:15:50 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:6,849,861 INFO 2026-06-04 21:15:50 MarkDuplicates Tracking 127970 as yet unmatched pairs. 126469 records in RAM. INFO 2026-06-04 21:15:52 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:15,277,026 INFO 2026-06-04 21:15:52 MarkDuplicates Tracking 129883 as yet unmatched pairs. 128357 records in RAM. INFO 2026-06-04 21:15:54 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:26,188,152 INFO 2026-06-04 21:15:54 MarkDuplicates Tracking 131587 as yet unmatched pairs. 130038 records in RAM. INFO 2026-06-04 21:15:56 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,458,133 INFO 2026-06-04 21:15:56 MarkDuplicates Tracking 133656 as yet unmatched pairs. 132099 records in RAM. INFO 2026-06-04 21:15:57 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,258 INFO 2026-06-04 21:15:57 MarkDuplicates Tracking 168595 as yet unmatched pairs. 132301 records in RAM. INFO 2026-06-04 21:16:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-04 21:16:00 MarkDuplicates Tracking 747441 as yet unmatched pairs. 114107 records in RAM. INFO 2026-06-04 21:16:01 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:16:01 MarkDuplicates Tracking 946136 as yet unmatched pairs. 108318 records in RAM. INFO 2026-06-04 21:16:02 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:37,213,888 INFO 2026-06-04 21:16:02 MarkDuplicates Tracking 986559 as yet unmatched pairs. 106474 records in RAM. INFO 2026-06-04 21:16:04 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:43,899,477 INFO 2026-06-04 21:16:04 MarkDuplicates Tracking 984734 as yet unmatched pairs. 104615 records in RAM. INFO 2026-06-04 21:16:06 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,208 INFO 2026-06-04 21:16:06 MarkDuplicates Tracking 983247 as yet unmatched pairs. 103095 records in RAM. INFO 2026-06-04 21:16:07 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:55,349,582 INFO 2026-06-04 21:16:07 MarkDuplicates Tracking 982169 as yet unmatched pairs. 102008 records in RAM. INFO 2026-06-04 21:16:09 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:65,253,728 INFO 2026-06-04 21:16:09 MarkDuplicates Tracking 980037 as yet unmatched pairs. 99846 records in RAM. INFO 2026-06-04 21:16:10 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:71,426,535 INFO 2026-06-04 21:16:10 MarkDuplicates Tracking 977605 as yet unmatched pairs. 97387 records in RAM. INFO 2026-06-04 21:16:12 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,008 INFO 2026-06-04 21:16:12 MarkDuplicates Tracking 977039 as yet unmatched pairs. 96789 records in RAM. INFO 2026-06-04 21:16:13 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:95,893,566 INFO 2026-06-04 21:16:13 MarkDuplicates Tracking 974178 as yet unmatched pairs. 93901 records in RAM. INFO 2026-06-04 21:16:15 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:99,319,799 INFO 2026-06-04 21:16:15 MarkDuplicates Tracking 972502 as yet unmatched pairs. 92214 records in RAM. INFO 2026-06-04 21:16:16 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:106,423,383 INFO 2026-06-04 21:16:16 MarkDuplicates Tracking 970788 as yet unmatched pairs. 90479 records in RAM. INFO 2026-06-04 21:16:18 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,854 INFO 2026-06-04 21:16:18 MarkDuplicates Tracking 969810 as yet unmatched pairs. 89482 records in RAM. INFO 2026-06-04 21:16:19 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:110,535,202 INFO 2026-06-04 21:16:19 MarkDuplicates Tracking 968583 as yet unmatched pairs. 88248 records in RAM. INFO 2026-06-04 21:16:20 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:112,647,136 INFO 2026-06-04 21:16:20 MarkDuplicates Tracking 968925 as yet unmatched pairs. 88574 records in RAM. INFO 2026-06-04 21:16:21 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:127,286,874 INFO 2026-06-04 21:16:21 MarkDuplicates Tracking 966234 as yet unmatched pairs. 85852 records in RAM. INFO 2026-06-04 21:16:23 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:135,983,423 INFO 2026-06-04 21:16:23 MarkDuplicates Tracking 964208 as yet unmatched pairs. 83782 records in RAM. INFO 2026-06-04 21:16:25 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:156,326,896 INFO 2026-06-04 21:16:25 MarkDuplicates Tracking 962918 as yet unmatched pairs. 82458 records in RAM. INFO 2026-06-04 21:16:26 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:169,604,186 INFO 2026-06-04 21:16:26 MarkDuplicates Tracking 961233 as yet unmatched pairs. 80735 records in RAM. INFO 2026-06-04 21:16:29 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:174,585,564 INFO 2026-06-04 21:16:29 MarkDuplicates Tracking 959454 as yet unmatched pairs. 78936 records in RAM. INFO 2026-06-04 21:16:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:181,457,733 INFO 2026-06-04 21:16:30 MarkDuplicates Tracking 957976 as yet unmatched pairs. 77445 records in RAM. INFO 2026-06-04 21:16:32 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:188,974,599 INFO 2026-06-04 21:16:32 MarkDuplicates Tracking 960663 as yet unmatched pairs. 80106 records in RAM. INFO 2026-06-04 21:16:33 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,696 INFO 2026-06-04 21:16:33 MarkDuplicates Tracking 959100 as yet unmatched pairs. 78527 records in RAM. INFO 2026-06-04 21:16:35 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:189,005,400 INFO 2026-06-04 21:16:35 MarkDuplicates Tracking 955579 as yet unmatched pairs. 74995 records in RAM. INFO 2026-06-04 21:16:38 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:189,034,943 INFO 2026-06-04 21:16:38 MarkDuplicates Tracking 951062 as yet unmatched pairs. 70466 records in RAM. INFO 2026-06-04 21:16:40 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:189,752,693 INFO 2026-06-04 21:16:40 MarkDuplicates Tracking 947468 as yet unmatched pairs. 66862 records in RAM. INFO 2026-06-04 21:16:41 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:196,139,790 INFO 2026-06-04 21:16:41 MarkDuplicates Tracking 945957 as yet unmatched pairs. 65331 records in RAM. INFO 2026-06-04 21:16:43 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:200,822,180 INFO 2026-06-04 21:16:43 MarkDuplicates Tracking 944132 as yet unmatched pairs. 63489 records in RAM. INFO 2026-06-04 21:16:45 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:206,126,803 INFO 2026-06-04 21:16:45 MarkDuplicates Tracking 942287 as yet unmatched pairs. 61619 records in RAM. INFO 2026-06-04 21:16:46 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,552 INFO 2026-06-04 21:16:46 MarkDuplicates Tracking 961654 as yet unmatched pairs. 80953 records in RAM. INFO 2026-06-04 21:16:48 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,958 INFO 2026-06-04 21:16:48 MarkDuplicates Tracking 958432 as yet unmatched pairs. 77717 records in RAM. INFO 2026-06-04 21:16:49 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,391 INFO 2026-06-04 21:16:49 MarkDuplicates Tracking 973484 as yet unmatched pairs. 92766 records in RAM. INFO 2026-06-04 21:16:51 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,126 INFO 2026-06-04 21:16:51 MarkDuplicates Tracking 987382 as yet unmatched pairs. 106661 records in RAM. INFO 2026-06-04 21:16:53 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,341 INFO 2026-06-04 21:16:53 MarkDuplicates Tracking 955412 as yet unmatched pairs. 74688 records in RAM. INFO 2026-06-04 21:16:54 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,338 INFO 2026-06-04 21:16:54 MarkDuplicates Tracking 942009 as yet unmatched pairs. 61278 records in RAM. INFO 2026-06-04 21:16:55 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,548 INFO 2026-06-04 21:16:55 MarkDuplicates Tracking 959992 as yet unmatched pairs. 79260 records in RAM. INFO 2026-06-04 21:16:57 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,194 INFO 2026-06-04 21:16:57 MarkDuplicates Tracking 973090 as yet unmatched pairs. 92354 records in RAM. INFO 2026-06-04 21:16:59 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,225 INFO 2026-06-04 21:16:59 MarkDuplicates Tracking 966412 as yet unmatched pairs. 85656 records in RAM. INFO 2026-06-04 21:17:01 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,177 INFO 2026-06-04 21:17:01 MarkDuplicates Tracking 937571 as yet unmatched pairs. 56800 records in RAM. INFO 2026-06-04 21:17:02 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,955 INFO 2026-06-04 21:17:02 MarkDuplicates Tracking 958407 as yet unmatched pairs. 77623 records in RAM. INFO 2026-06-04 21:17:05 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:215,393,136 INFO 2026-06-04 21:17:05 MarkDuplicates Tracking 948645 as yet unmatched pairs. 67853 records in RAM. INFO 2026-06-04 21:17:06 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,712 INFO 2026-06-04 21:17:06 MarkDuplicates Tracking 947129 as yet unmatched pairs. 66334 records in RAM. INFO 2026-06-04 21:17:08 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,588 INFO 2026-06-04 21:17:08 MarkDuplicates Tracking 941232 as yet unmatched pairs. 60423 records in RAM. INFO 2026-06-04 21:17:10 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,271 INFO 2026-06-04 21:17:10 MarkDuplicates Tracking 937153 as yet unmatched pairs. 56337 records in RAM. INFO 2026-06-04 21:17:11 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,618 INFO 2026-06-04 21:17:11 MarkDuplicates Tracking 930774 as yet unmatched pairs. 49950 records in RAM. INFO 2026-06-04 21:17:13 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,837 INFO 2026-06-04 21:17:13 MarkDuplicates Tracking 930243 as yet unmatched pairs. 49415 records in RAM. INFO 2026-06-04 21:17:14 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,101 INFO 2026-06-04 21:17:14 MarkDuplicates Tracking 925526 as yet unmatched pairs. 44688 records in RAM. INFO 2026-06-04 21:17:16 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,233 INFO 2026-06-04 21:17:16 MarkDuplicates Tracking 942040 as yet unmatched pairs. 61201 records in RAM. INFO 2026-06-04 21:17:17 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,321 INFO 2026-06-04 21:17:17 MarkDuplicates Tracking 931974 as yet unmatched pairs. 51120 records in RAM. INFO 2026-06-04 21:17:19 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,414 INFO 2026-06-04 21:17:19 MarkDuplicates Tracking 922364 as yet unmatched pairs. 41499 records in RAM. INFO 2026-06-04 21:17:21 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:216,500,038 INFO 2026-06-04 21:17:21 MarkDuplicates Tracking 904229 as yet unmatched pairs. 23346 records in RAM. INFO 2026-06-04 21:17:22 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:216,679,049 INFO 2026-06-04 21:17:22 MarkDuplicates Tracking 908241 as yet unmatched pairs. 27335 records in RAM. INFO 2026-06-04 21:17:23 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:218,265,108 INFO 2026-06-04 21:17:23 MarkDuplicates Tracking 900530 as yet unmatched pairs. 19601 records in RAM. INFO 2026-06-04 21:17:26 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:222,918,065 INFO 2026-06-04 21:17:26 MarkDuplicates Tracking 898478 as yet unmatched pairs. 17508 records in RAM. INFO 2026-06-04 21:17:27 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:230,875,687 INFO 2026-06-04 21:17:27 MarkDuplicates Tracking 897372 as yet unmatched pairs. 16380 records in RAM. INFO 2026-06-04 21:17:29 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:233,511,746 INFO 2026-06-04 21:17:29 MarkDuplicates Tracking 894948 as yet unmatched pairs. 13934 records in RAM. INFO 2026-06-04 21:17:31 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:237,340,588 INFO 2026-06-04 21:17:31 MarkDuplicates Tracking 899379 as yet unmatched pairs. 18341 records in RAM. INFO 2026-06-04 21:17:34 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:237,350,157 INFO 2026-06-04 21:17:34 MarkDuplicates Tracking 894992 as yet unmatched pairs. 13942 records in RAM. INFO 2026-06-04 21:17:35 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:237,363,313 INFO 2026-06-04 21:17:35 MarkDuplicates Tracking 893766 as yet unmatched pairs. 12709 records in RAM. INFO 2026-06-04 21:17:37 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,890 INFO 2026-06-04 21:17:37 MarkDuplicates Tracking 894279 as yet unmatched pairs. 13208 records in RAM. INFO 2026-06-04 21:17:38 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:237,378,825 INFO 2026-06-04 21:17:38 MarkDuplicates Tracking 889973 as yet unmatched pairs. 8831 records in RAM. INFO 2026-06-04 21:17:40 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr2:237,763,826 INFO 2026-06-04 21:17:40 MarkDuplicates Tracking 884201 as yet unmatched pairs. 3037 records in RAM. INFO 2026-06-04 21:17:41 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:241,264,569 INFO 2026-06-04 21:17:41 MarkDuplicates Tracking 882993 as yet unmatched pairs. 1816 records in RAM. INFO 2026-06-04 21:17:43 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:9,445,123 INFO 2026-06-04 21:17:43 MarkDuplicates Tracking 880505 as yet unmatched pairs. 51601 records in RAM. INFO 2026-06-04 21:17:45 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:12,600,257 INFO 2026-06-04 21:17:45 MarkDuplicates Tracking 880647 as yet unmatched pairs. 51728 records in RAM. INFO 2026-06-04 21:17:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:24,143,564 INFO 2026-06-04 21:17:46 MarkDuplicates Tracking 876434 as yet unmatched pairs. 47492 records in RAM. INFO 2026-06-04 21:17:48 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:36,738,402 INFO 2026-06-04 21:17:48 MarkDuplicates Tracking 874648 as yet unmatched pairs. 45653 records in RAM. INFO 2026-06-04 21:17:49 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:40,529,327 INFO 2026-06-04 21:17:49 MarkDuplicates Tracking 873125 as yet unmatched pairs. 44108 records in RAM. INFO 2026-06-04 21:17:50 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:45,973,127 INFO 2026-06-04 21:17:50 MarkDuplicates Tracking 871261 as yet unmatched pairs. 42217 records in RAM. INFO 2026-06-04 21:17:52 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:47,917,082 INFO 2026-06-04 21:17:52 MarkDuplicates Tracking 870725 as yet unmatched pairs. 41666 records in RAM. INFO 2026-06-04 21:17:54 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:49,110,710 INFO 2026-06-04 21:17:54 MarkDuplicates Tracking 867792 as yet unmatched pairs. 38712 records in RAM. INFO 2026-06-04 21:17:55 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:49,909,174 INFO 2026-06-04 21:17:55 MarkDuplicates Tracking 865651 as yet unmatched pairs. 36560 records in RAM. INFO 2026-06-04 21:17:57 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:52,206,632 INFO 2026-06-04 21:17:57 MarkDuplicates Tracking 863935 as yet unmatched pairs. 34831 records in RAM. INFO 2026-06-04 21:17:58 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:53,228,087 INFO 2026-06-04 21:17:58 MarkDuplicates Tracking 862263 as yet unmatched pairs. 33127 records in RAM. INFO 2026-06-04 21:18:00 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:63,995,986 INFO 2026-06-04 21:18:00 MarkDuplicates Tracking 860420 as yet unmatched pairs. 31241 records in RAM. INFO 2026-06-04 21:18:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:75,214,975 INFO 2026-06-04 21:18:01 MarkDuplicates Tracking 858469 as yet unmatched pairs. 29239 records in RAM. INFO 2026-06-04 21:18:05 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 3s. Last read position: chr3:98,800,675 INFO 2026-06-04 21:18:05 MarkDuplicates Tracking 857463 as yet unmatched pairs. 28217 records in RAM. INFO 2026-06-04 21:18:06 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:101,459,041 INFO 2026-06-04 21:18:06 MarkDuplicates Tracking 855474 as yet unmatched pairs. 26216 records in RAM. INFO 2026-06-04 21:18:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:112,605,316 INFO 2026-06-04 21:18:08 MarkDuplicates Tracking 853426 as yet unmatched pairs. 24149 records in RAM. INFO 2026-06-04 21:18:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:120,596,439 INFO 2026-06-04 21:18:10 MarkDuplicates Tracking 852589 as yet unmatched pairs. 23283 records in RAM. INFO 2026-06-04 21:18:12 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:124,796,511 INFO 2026-06-04 21:18:12 MarkDuplicates Tracking 850656 as yet unmatched pairs. 21331 records in RAM. INFO 2026-06-04 21:18:14 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:128,098,932 INFO 2026-06-04 21:18:14 MarkDuplicates Tracking 848226 as yet unmatched pairs. 18885 records in RAM. INFO 2026-06-04 21:18:15 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:129,571,509 INFO 2026-06-04 21:18:15 MarkDuplicates Tracking 847113 as yet unmatched pairs. 17755 records in RAM. INFO 2026-06-04 21:18:17 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:136,151,192 INFO 2026-06-04 21:18:17 MarkDuplicates Tracking 844276 as yet unmatched pairs. 14906 records in RAM. INFO 2026-06-04 21:18:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:146,072,563 INFO 2026-06-04 21:18:18 MarkDuplicates Tracking 842900 as yet unmatched pairs. 13507 records in RAM. INFO 2026-06-04 21:18:20 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:151,213,996 INFO 2026-06-04 21:18:20 MarkDuplicates Tracking 840589 as yet unmatched pairs. 11175 records in RAM. INFO 2026-06-04 21:18:21 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:160,536,813 INFO 2026-06-04 21:18:21 MarkDuplicates Tracking 839205 as yet unmatched pairs. 9764 records in RAM. INFO 2026-06-04 21:18:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:175,097,165 INFO 2026-06-04 21:18:23 MarkDuplicates Tracking 837104 as yet unmatched pairs. 7635 records in RAM. INFO 2026-06-04 21:18:24 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:184,170,662 INFO 2026-06-04 21:18:24 MarkDuplicates Tracking 835513 as yet unmatched pairs. 6024 records in RAM. INFO 2026-06-04 21:18:26 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:185,645,492 INFO 2026-06-04 21:18:26 MarkDuplicates Tracking 834032 as yet unmatched pairs. 4523 records in RAM. INFO 2026-06-04 21:18:28 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:194,137,803 INFO 2026-06-04 21:18:28 MarkDuplicates Tracking 831647 as yet unmatched pairs. 2099 records in RAM. INFO 2026-06-04 21:18:29 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:197,848,009 INFO 2026-06-04 21:18:29 MarkDuplicates Tracking 830018 as yet unmatched pairs. 437 records in RAM. INFO 2026-06-04 21:18:31 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr4:2,928,559 INFO 2026-06-04 21:18:31 MarkDuplicates Tracking 827938 as yet unmatched pairs. 23741 records in RAM. INFO 2026-06-04 21:18:33 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:16,502,546 INFO 2026-06-04 21:18:33 MarkDuplicates Tracking 826036 as yet unmatched pairs. 21826 records in RAM. INFO 2026-06-04 21:18:34 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:39,454,198 INFO 2026-06-04 21:18:34 MarkDuplicates Tracking 826008 as yet unmatched pairs. 21753 records in RAM. INFO 2026-06-04 21:18:36 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:54,288,871 INFO 2026-06-04 21:18:36 MarkDuplicates Tracking 823398 as yet unmatched pairs. 19131 records in RAM. INFO 2026-06-04 21:18:38 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,203 INFO 2026-06-04 21:18:38 MarkDuplicates Tracking 820897 as yet unmatched pairs. 16619 records in RAM. INFO 2026-06-04 21:18:39 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:82,427,544 INFO 2026-06-04 21:18:39 MarkDuplicates Tracking 820672 as yet unmatched pairs. 16380 records in RAM. INFO 2026-06-04 21:18:41 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:87,980,081 INFO 2026-06-04 21:18:41 MarkDuplicates Tracking 818625 as yet unmatched pairs. 14319 records in RAM. INFO 2026-06-04 21:18:44 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr4:102,580,598 INFO 2026-06-04 21:18:44 MarkDuplicates Tracking 815626 as yet unmatched pairs. 11301 records in RAM. INFO 2026-06-04 21:18:46 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:112,539,940 INFO 2026-06-04 21:18:46 MarkDuplicates Tracking 813812 as yet unmatched pairs. 9469 records in RAM. INFO 2026-06-04 21:18:47 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:125,318,519 INFO 2026-06-04 21:18:47 MarkDuplicates Tracking 812545 as yet unmatched pairs. 8186 records in RAM. INFO 2026-06-04 21:18:49 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:143,195,792 INFO 2026-06-04 21:18:49 MarkDuplicates Tracking 810279 as yet unmatched pairs. 5899 records in RAM. INFO 2026-06-04 21:18:50 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:163,528,758 INFO 2026-06-04 21:18:50 MarkDuplicates Tracking 808500 as yet unmatched pairs. 4101 records in RAM. INFO 2026-06-04 21:18:52 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:186,162,842 INFO 2026-06-04 21:18:52 MarkDuplicates Tracking 806523 as yet unmatched pairs. 2087 records in RAM. INFO 2026-06-04 21:18:53 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:186,708,795 INFO 2026-06-04 21:18:53 MarkDuplicates Tracking 806393 as yet unmatched pairs. 1947 records in RAM. INFO 2026-06-04 21:18:55 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:10,429,999 INFO 2026-06-04 21:18:55 MarkDuplicates Tracking 803312 as yet unmatched pairs. 52409 records in RAM. INFO 2026-06-04 21:18:56 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:14,488,131 INFO 2026-06-04 21:18:56 MarkDuplicates Tracking 802044 as yet unmatched pairs. 51118 records in RAM. INFO 2026-06-04 21:18:58 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:32,591,556 INFO 2026-06-04 21:18:58 MarkDuplicates Tracking 800871 as yet unmatched pairs. 49916 records in RAM. INFO 2026-06-04 21:19:00 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:40,681,214 INFO 2026-06-04 21:19:00 MarkDuplicates Tracking 797939 as yet unmatched pairs. 46964 records in RAM. INFO 2026-06-04 21:19:01 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:55,269,415 INFO 2026-06-04 21:19:01 MarkDuplicates Tracking 795767 as yet unmatched pairs. 44779 records in RAM. INFO 2026-06-04 21:19:03 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:65,591,740 INFO 2026-06-04 21:19:03 MarkDuplicates Tracking 793918 as yet unmatched pairs. 42899 records in RAM. INFO 2026-06-04 21:19:04 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:72,197,401 INFO 2026-06-04 21:19:04 MarkDuplicates Tracking 792800 as yet unmatched pairs. 41751 records in RAM. INFO 2026-06-04 21:19:05 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:80,055,973 INFO 2026-06-04 21:19:05 MarkDuplicates Tracking 791827 as yet unmatched pairs. 40765 records in RAM. INFO 2026-06-04 21:19:07 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,353 INFO 2026-06-04 21:19:07 MarkDuplicates Tracking 792839 as yet unmatched pairs. 41755 records in RAM. INFO 2026-06-04 21:19:09 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:83,580,014 INFO 2026-06-04 21:19:09 MarkDuplicates Tracking 788966 as yet unmatched pairs. 37860 records in RAM. INFO 2026-06-04 21:19:10 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:102,950,740 INFO 2026-06-04 21:19:10 MarkDuplicates Tracking 786095 as yet unmatched pairs. 34959 records in RAM. INFO 2026-06-04 21:19:13 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:124,644,482 INFO 2026-06-04 21:19:13 MarkDuplicates Tracking 783633 as yet unmatched pairs. 32481 records in RAM. INFO 2026-06-04 21:19:16 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 3s. Last read position: chr5:134,146,205 INFO 2026-06-04 21:19:16 MarkDuplicates Tracking 781845 as yet unmatched pairs. 30687 records in RAM. INFO 2026-06-04 21:19:18 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:138,391,961 INFO 2026-06-04 21:19:18 MarkDuplicates Tracking 779961 as yet unmatched pairs. 28799 records in RAM. INFO 2026-06-04 21:19:19 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:138,473,836 INFO 2026-06-04 21:19:19 MarkDuplicates Tracking 778146 as yet unmatched pairs. 26970 records in RAM. INFO 2026-06-04 21:19:21 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:141,009,638 INFO 2026-06-04 21:19:21 MarkDuplicates Tracking 776393 as yet unmatched pairs. 25165 records in RAM. INFO 2026-06-04 21:19:22 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,647 INFO 2026-06-04 21:19:22 MarkDuplicates Tracking 775951 as yet unmatched pairs. 24705 records in RAM. INFO 2026-06-04 21:19:24 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:149,550,053 INFO 2026-06-04 21:19:24 MarkDuplicates Tracking 773707 as yet unmatched pairs. 22418 records in RAM. INFO 2026-06-04 21:19:25 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:150,119,494 INFO 2026-06-04 21:19:25 MarkDuplicates Tracking 781341 as yet unmatched pairs. 30040 records in RAM. INFO 2026-06-04 21:19:27 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,129,899 INFO 2026-06-04 21:19:27 MarkDuplicates Tracking 775836 as yet unmatched pairs. 24532 records in RAM. INFO 2026-06-04 21:19:28 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,718 INFO 2026-06-04 21:19:28 MarkDuplicates Tracking 776682 as yet unmatched pairs. 25370 records in RAM. INFO 2026-06-04 21:19:30 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,319 INFO 2026-06-04 21:19:30 MarkDuplicates Tracking 773207 as yet unmatched pairs. 21874 records in RAM. INFO 2026-06-04 21:19:31 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,463 INFO 2026-06-04 21:19:31 MarkDuplicates Tracking 768605 as yet unmatched pairs. 17256 records in RAM. INFO 2026-06-04 21:19:33 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:154,924,478 INFO 2026-06-04 21:19:33 MarkDuplicates Tracking 761638 as yet unmatched pairs. 10263 records in RAM. INFO 2026-06-04 21:19:34 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,098 INFO 2026-06-04 21:19:34 MarkDuplicates Tracking 764447 as yet unmatched pairs. 13050 records in RAM. INFO 2026-06-04 21:19:36 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:172,768,849 INFO 2026-06-04 21:19:36 MarkDuplicates Tracking 760283 as yet unmatched pairs. 8884 records in RAM. INFO 2026-06-04 21:19:38 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:177,492,644 INFO 2026-06-04 21:19:38 MarkDuplicates Tracking 756257 as yet unmatched pairs. 4842 records in RAM. INFO 2026-06-04 21:19:39 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,765,762 INFO 2026-06-04 21:19:39 MarkDuplicates Tracking 754683 as yet unmatched pairs. 3266 records in RAM. INFO 2026-06-04 21:19:43 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 3s. Last read position: chr5:179,836,953 INFO 2026-06-04 21:19:43 MarkDuplicates Tracking 753243 as yet unmatched pairs. 1809 records in RAM. INFO 2026-06-04 21:19:45 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:4,133,548 INFO 2026-06-04 21:19:45 MarkDuplicates Tracking 751040 as yet unmatched pairs. 51934 records in RAM. INFO 2026-06-04 21:19:46 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:16,129,257 INFO 2026-06-04 21:19:46 MarkDuplicates Tracking 748901 as yet unmatched pairs. 49777 records in RAM. INFO 2026-06-04 21:19:48 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,501 INFO 2026-06-04 21:19:48 MarkDuplicates Tracking 748367 as yet unmatched pairs. 49202 records in RAM. INFO 2026-06-04 21:19:49 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:26,637,626 INFO 2026-06-04 21:19:49 MarkDuplicates Tracking 745228 as yet unmatched pairs. 46050 records in RAM. INFO 2026-06-04 21:19:50 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:29,830,392 INFO 2026-06-04 21:19:50 MarkDuplicates Tracking 744191 as yet unmatched pairs. 45009 records in RAM. INFO 2026-06-04 21:19:52 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:30,649,706 INFO 2026-06-04 21:19:52 MarkDuplicates Tracking 742169 as yet unmatched pairs. 42985 records in RAM. INFO 2026-06-04 21:19:53 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,380 INFO 2026-06-04 21:19:53 MarkDuplicates Tracking 743719 as yet unmatched pairs. 44526 records in RAM. INFO 2026-06-04 21:19:55 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,792 INFO 2026-06-04 21:19:55 MarkDuplicates Tracking 740006 as yet unmatched pairs. 40804 records in RAM. INFO 2026-06-04 21:19:56 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,849 INFO 2026-06-04 21:19:56 MarkDuplicates Tracking 738141 as yet unmatched pairs. 38934 records in RAM. INFO 2026-06-04 21:19:57 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,662 INFO 2026-06-04 21:19:57 MarkDuplicates Tracking 740402 as yet unmatched pairs. 41180 records in RAM. INFO 2026-06-04 21:19:59 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:31,962,455 INFO 2026-06-04 21:19:59 MarkDuplicates Tracking 735120 as yet unmatched pairs. 35886 records in RAM. INFO 2026-06-04 21:20:00 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:32,976,339 INFO 2026-06-04 21:20:00 MarkDuplicates Tracking 734266 as yet unmatched pairs. 35027 records in RAM. INFO 2026-06-04 21:20:02 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:33,432,740 INFO 2026-06-04 21:20:02 MarkDuplicates Tracking 731467 as yet unmatched pairs. 32223 records in RAM. INFO 2026-06-04 21:20:03 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:38,592,614 INFO 2026-06-04 21:20:03 MarkDuplicates Tracking 729858 as yet unmatched pairs. 30571 records in RAM. INFO 2026-06-04 21:20:05 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:42,965,306 INFO 2026-06-04 21:20:05 MarkDuplicates Tracking 727838 as yet unmatched pairs. 28543 records in RAM. INFO 2026-06-04 21:20:08 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:43,777,482 INFO 2026-06-04 21:20:08 MarkDuplicates Tracking 727969 as yet unmatched pairs. 28656 records in RAM. INFO 2026-06-04 21:20:09 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:52,264,636 INFO 2026-06-04 21:20:09 MarkDuplicates Tracking 723988 as yet unmatched pairs. 24660 records in RAM. INFO 2026-06-04 21:20:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:63,711,639 INFO 2026-06-04 21:20:11 MarkDuplicates Tracking 722353 as yet unmatched pairs. 22987 records in RAM. INFO 2026-06-04 21:20:12 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:75,177,685 INFO 2026-06-04 21:20:12 MarkDuplicates Tracking 721623 as yet unmatched pairs. 22234 records in RAM. INFO 2026-06-04 21:20:14 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:84,760,279 INFO 2026-06-04 21:20:14 MarkDuplicates Tracking 718685 as yet unmatched pairs. 19278 records in RAM. INFO 2026-06-04 21:20:15 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:93,358,302 INFO 2026-06-04 21:20:15 MarkDuplicates Tracking 717841 as yet unmatched pairs. 18413 records in RAM. INFO 2026-06-04 21:20:17 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:109,727,224 INFO 2026-06-04 21:20:17 MarkDuplicates Tracking 715062 as yet unmatched pairs. 15616 records in RAM. INFO 2026-06-04 21:20:18 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:116,453,395 INFO 2026-06-04 21:20:18 MarkDuplicates Tracking 712960 as yet unmatched pairs. 13491 records in RAM. INFO 2026-06-04 21:20:20 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,662 INFO 2026-06-04 21:20:20 MarkDuplicates Tracking 711792 as yet unmatched pairs. 12296 records in RAM. INFO 2026-06-04 21:20:22 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:135,466,161 INFO 2026-06-04 21:20:22 MarkDuplicates Tracking 709479 as yet unmatched pairs. 9968 records in RAM. INFO 2026-06-04 21:20:23 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:144,421,920 INFO 2026-06-04 21:20:23 MarkDuplicates Tracking 707754 as yet unmatched pairs. 8218 records in RAM. INFO 2026-06-04 21:20:24 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:150,840,617 INFO 2026-06-04 21:20:24 MarkDuplicates Tracking 705875 as yet unmatched pairs. 6309 records in RAM. INFO 2026-06-04 21:20:27 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:158,452,240 INFO 2026-06-04 21:20:27 MarkDuplicates Tracking 704100 as yet unmatched pairs. 4520 records in RAM. INFO 2026-06-04 21:20:29 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:161,091,515 INFO 2026-06-04 21:20:29 MarkDuplicates Tracking 702189 as yet unmatched pairs. 2597 records in RAM. INFO 2026-06-04 21:20:31 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:169,225,168 INFO 2026-06-04 21:20:31 MarkDuplicates Tracking 700535 as yet unmatched pairs. 936 records in RAM. INFO 2026-06-04 21:20:33 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:1,437,888 INFO 2026-06-04 21:20:33 MarkDuplicates Tracking 698468 as yet unmatched pairs. 55600 records in RAM. INFO 2026-06-04 21:20:35 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:4,682,560 INFO 2026-06-04 21:20:35 MarkDuplicates Tracking 696187 as yet unmatched pairs. 53303 records in RAM. INFO 2026-06-04 21:21:31 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 55s. Last read position: chr7:5,421,182 INFO 2026-06-04 21:21:31 MarkDuplicates Tracking 694275 as yet unmatched pairs. 51385 records in RAM. INFO 2026-06-04 21:21:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,592 INFO 2026-06-04 21:21:32 MarkDuplicates Tracking 702316 as yet unmatched pairs. 59419 records in RAM. INFO 2026-06-04 21:21:34 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:6,149,840 INFO 2026-06-04 21:21:34 MarkDuplicates Tracking 690461 as yet unmatched pairs. 47552 records in RAM. INFO 2026-06-04 21:21:36 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr7:13,931,532 INFO 2026-06-04 21:21:36 MarkDuplicates Tracking 689666 as yet unmatched pairs. 46734 records in RAM. INFO 2026-06-04 21:21:37 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:23,246,801 INFO 2026-06-04 21:21:37 MarkDuplicates Tracking 687203 as yet unmatched pairs. 44239 records in RAM. INFO 2026-06-04 21:21:39 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:28,955,712 INFO 2026-06-04 21:21:39 MarkDuplicates Tracking 686039 as yet unmatched pairs. 43056 records in RAM. INFO 2026-06-04 21:21:41 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:33,336,479 INFO 2026-06-04 21:21:41 MarkDuplicates Tracking 683255 as yet unmatched pairs. 40260 records in RAM. INFO 2026-06-04 21:21:42 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:42,025,338 INFO 2026-06-04 21:21:42 MarkDuplicates Tracking 682092 as yet unmatched pairs. 39057 records in RAM. INFO 2026-06-04 21:21:44 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,208,146 INFO 2026-06-04 21:21:44 MarkDuplicates Tracking 681421 as yet unmatched pairs. 38371 records in RAM. INFO 2026-06-04 21:21:45 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:47,344,755 INFO 2026-06-04 21:21:45 MarkDuplicates Tracking 677809 as yet unmatched pairs. 34733 records in RAM. INFO 2026-06-04 21:21:47 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:55,205,366 INFO 2026-06-04 21:21:47 MarkDuplicates Tracking 676547 as yet unmatched pairs. 33457 records in RAM. INFO 2026-06-04 21:21:49 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,472 INFO 2026-06-04 21:21:49 MarkDuplicates Tracking 674168 as yet unmatched pairs. 31057 records in RAM. INFO 2026-06-04 21:21:50 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:74,882,939 INFO 2026-06-04 21:21:50 MarkDuplicates Tracking 672887 as yet unmatched pairs. 29765 records in RAM. INFO 2026-06-04 21:21:52 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,984 INFO 2026-06-04 21:21:52 MarkDuplicates Tracking 673729 as yet unmatched pairs. 30597 records in RAM. INFO 2026-06-04 21:21:53 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:91,265,134 INFO 2026-06-04 21:21:53 MarkDuplicates Tracking 669933 as yet unmatched pairs. 26775 records in RAM. INFO 2026-06-04 21:21:55 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,225 INFO 2026-06-04 21:21:55 MarkDuplicates Tracking 673879 as yet unmatched pairs. 30707 records in RAM. INFO 2026-06-04 21:21:56 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:94,413,732 INFO 2026-06-04 21:21:56 MarkDuplicates Tracking 670903 as yet unmatched pairs. 27718 records in RAM. INFO 2026-06-04 21:21:58 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:94,427,740 INFO 2026-06-04 21:21:58 MarkDuplicates Tracking 667978 as yet unmatched pairs. 24775 records in RAM. INFO 2026-06-04 21:22:00 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr7:98,224,924 INFO 2026-06-04 21:22:00 MarkDuplicates Tracking 662043 as yet unmatched pairs. 18828 records in RAM. INFO 2026-06-04 21:22:02 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,430,547 INFO 2026-06-04 21:22:02 MarkDuplicates Tracking 660123 as yet unmatched pairs. 16907 records in RAM. INFO 2026-06-04 21:22:04 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:101,135,795 INFO 2026-06-04 21:22:04 MarkDuplicates Tracking 658695 as yet unmatched pairs. 15474 records in RAM. INFO 2026-06-04 21:22:05 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:102,600,280 INFO 2026-06-04 21:22:05 MarkDuplicates Tracking 657738 as yet unmatched pairs. 14507 records in RAM. INFO 2026-06-04 21:22:06 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:107,600,430 INFO 2026-06-04 21:22:06 MarkDuplicates Tracking 656119 as yet unmatched pairs. 12874 records in RAM. INFO 2026-06-04 21:22:08 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:112,336,144 INFO 2026-06-04 21:22:08 MarkDuplicates Tracking 654100 as yet unmatched pairs. 10841 records in RAM. INFO 2026-06-04 21:22:09 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr7:127,929,267 INFO 2026-06-04 21:22:09 MarkDuplicates Tracking 653177 as yet unmatched pairs. 9898 records in RAM. INFO 2026-06-04 21:22:11 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:130,497,999 INFO 2026-06-04 21:22:11 MarkDuplicates Tracking 653561 as yet unmatched pairs. 10268 records in RAM. INFO 2026-06-04 21:22:12 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:138,583,884 INFO 2026-06-04 21:22:12 MarkDuplicates Tracking 648886 as yet unmatched pairs. 5560 records in RAM. INFO 2026-06-04 21:22:14 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:143,383,191 INFO 2026-06-04 21:22:14 MarkDuplicates Tracking 647527 as yet unmatched pairs. 4181 records in RAM. INFO 2026-06-04 21:22:15 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:151,077,219 INFO 2026-06-04 21:22:15 MarkDuplicates Tracking 645466 as yet unmatched pairs. 2105 records in RAM. INFO 2026-06-04 21:22:17 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr7:158,773,298 INFO 2026-06-04 21:22:17 MarkDuplicates Tracking 643690 as yet unmatched pairs. 314 records in RAM. INFO 2026-06-04 21:22:20 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr8:11,850,911 INFO 2026-06-04 21:22:20 MarkDuplicates Tracking 644564 as yet unmatched pairs. 37883 records in RAM. INFO 2026-06-04 21:22:21 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:18,935,813 INFO 2026-06-04 21:22:21 MarkDuplicates Tracking 640064 as yet unmatched pairs. 33363 records in RAM. INFO 2026-06-04 21:22:23 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr8:22,621,450 INFO 2026-06-04 21:22:23 MarkDuplicates Tracking 638082 as yet unmatched pairs. 31376 records in RAM. INFO 2026-06-04 21:22:25 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:25,433,397 INFO 2026-06-04 21:22:25 MarkDuplicates Tracking 636164 as yet unmatched pairs. 29448 records in RAM. INFO 2026-06-04 21:22:26 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:33,389,757 INFO 2026-06-04 21:22:26 MarkDuplicates Tracking 634252 as yet unmatched pairs. 27525 records in RAM. INFO 2026-06-04 21:22:28 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:38,414,169 INFO 2026-06-04 21:22:28 MarkDuplicates Tracking 639041 as yet unmatched pairs. 32297 records in RAM. INFO 2026-06-04 21:22:30 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,889 INFO 2026-06-04 21:22:30 MarkDuplicates Tracking 631780 as yet unmatched pairs. 25025 records in RAM. INFO 2026-06-04 21:22:31 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:43,196,979 INFO 2026-06-04 21:22:31 MarkDuplicates Tracking 629016 as yet unmatched pairs. 22246 records in RAM. INFO 2026-06-04 21:22:33 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:56,167,296 INFO 2026-06-04 21:22:33 MarkDuplicates Tracking 627065 as yet unmatched pairs. 20282 records in RAM. INFO 2026-06-04 21:22:34 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:69,604,688 INFO 2026-06-04 21:22:34 MarkDuplicates Tracking 625403 as yet unmatched pairs. 18600 records in RAM. INFO 2026-06-04 21:22:36 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:78,666,120 INFO 2026-06-04 21:22:36 MarkDuplicates Tracking 623574 as yet unmatched pairs. 16752 records in RAM. INFO 2026-06-04 21:22:37 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:94,543,872 INFO 2026-06-04 21:22:37 MarkDuplicates Tracking 621822 as yet unmatched pairs. 14975 records in RAM. INFO 2026-06-04 21:22:39 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,748 INFO 2026-06-04 21:22:39 MarkDuplicates Tracking 621283 as yet unmatched pairs. 14432 records in RAM. INFO 2026-06-04 21:22:40 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:104,509,038 INFO 2026-06-04 21:22:40 MarkDuplicates Tracking 618664 as yet unmatched pairs. 11782 records in RAM. INFO 2026-06-04 21:22:42 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:121,628,849 INFO 2026-06-04 21:22:42 MarkDuplicates Tracking 616627 as yet unmatched pairs. 9727 records in RAM. INFO 2026-06-04 21:22:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:133,246,642 INFO 2026-06-04 21:22:43 MarkDuplicates Tracking 615402 as yet unmatched pairs. 8490 records in RAM. INFO 2026-06-04 21:22:45 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,589,929 INFO 2026-06-04 21:22:45 MarkDuplicates Tracking 612630 as yet unmatched pairs. 5705 records in RAM. INFO 2026-06-04 21:22:46 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,305 INFO 2026-06-04 21:22:46 MarkDuplicates Tracking 610686 as yet unmatched pairs. 3752 records in RAM. INFO 2026-06-04 21:22:48 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,086 INFO 2026-06-04 21:22:48 MarkDuplicates Tracking 608304 as yet unmatched pairs. 1361 records in RAM. INFO 2026-06-04 21:22:50 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:6,792,987 INFO 2026-06-04 21:22:50 MarkDuplicates Tracking 606312 as yet unmatched pairs. 30289 records in RAM. INFO 2026-06-04 21:22:51 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:21,968,222 INFO 2026-06-04 21:22:51 MarkDuplicates Tracking 605853 as yet unmatched pairs. 29790 records in RAM. INFO 2026-06-04 21:22:53 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,540 INFO 2026-06-04 21:22:53 MarkDuplicates Tracking 603387 as yet unmatched pairs. 27306 records in RAM. INFO 2026-06-04 21:22:55 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr9:37,518,301 INFO 2026-06-04 21:22:55 MarkDuplicates Tracking 600536 as yet unmatched pairs. 24426 records in RAM. INFO 2026-06-04 21:22:58 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr9:85,013,896 INFO 2026-06-04 21:22:58 MarkDuplicates Tracking 598939 as yet unmatched pairs. 22821 records in RAM. INFO 2026-06-04 21:22:59 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:94,760,011 INFO 2026-06-04 21:22:59 MarkDuplicates Tracking 597181 as yet unmatched pairs. 21048 records in RAM. INFO 2026-06-04 21:23:01 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:106,935,566 INFO 2026-06-04 21:23:01 MarkDuplicates Tracking 595616 as yet unmatched pairs. 19479 records in RAM. INFO 2026-06-04 21:23:02 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:114,250,641 INFO 2026-06-04 21:23:02 MarkDuplicates Tracking 593610 as yet unmatched pairs. 17457 records in RAM. INFO 2026-06-04 21:23:04 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:121,113,518 INFO 2026-06-04 21:23:04 MarkDuplicates Tracking 591769 as yet unmatched pairs. 15604 records in RAM. INFO 2026-06-04 21:23:05 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,284 INFO 2026-06-04 21:23:05 MarkDuplicates Tracking 590584 as yet unmatched pairs. 14403 records in RAM. INFO 2026-06-04 21:23:07 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:127,826,607 INFO 2026-06-04 21:23:07 MarkDuplicates Tracking 588328 as yet unmatched pairs. 12134 records in RAM. INFO 2026-06-04 21:23:08 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,617,636 INFO 2026-06-04 21:23:08 MarkDuplicates Tracking 586311 as yet unmatched pairs. 10109 records in RAM. INFO 2026-06-04 21:23:10 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:130,878,545 INFO 2026-06-04 21:23:10 MarkDuplicates Tracking 584879 as yet unmatched pairs. 8668 records in RAM. INFO 2026-06-04 21:23:11 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:133,110,192 INFO 2026-06-04 21:23:11 MarkDuplicates Tracking 582438 as yet unmatched pairs. 6213 records in RAM. INFO 2026-06-04 21:23:13 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,810,263 INFO 2026-06-04 21:23:13 MarkDuplicates Tracking 580710 as yet unmatched pairs. 4478 records in RAM. INFO 2026-06-04 21:23:14 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,503,204 INFO 2026-06-04 21:23:14 MarkDuplicates Tracking 578359 as yet unmatched pairs. 2122 records in RAM. INFO 2026-06-04 21:23:16 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:221,209 INFO 2026-06-04 21:23:16 MarkDuplicates Tracking 576497 as yet unmatched pairs. 23321 records in RAM. INFO 2026-06-04 21:23:17 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:13,659,366 INFO 2026-06-04 21:23:17 MarkDuplicates Tracking 574637 as yet unmatched pairs. 21454 records in RAM. INFO 2026-06-04 21:23:19 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:26,765,229 INFO 2026-06-04 21:23:19 MarkDuplicates Tracking 572977 as yet unmatched pairs. 19771 records in RAM. INFO 2026-06-04 21:23:21 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:32,034,028 INFO 2026-06-04 21:23:21 MarkDuplicates Tracking 571767 as yet unmatched pairs. 18558 records in RAM. INFO 2026-06-04 21:23:22 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:43,155,167 INFO 2026-06-04 21:23:22 MarkDuplicates Tracking 569488 as yet unmatched pairs. 16268 records in RAM. INFO 2026-06-04 21:23:23 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:58,789,748 INFO 2026-06-04 21:23:23 MarkDuplicates Tracking 567766 as yet unmatched pairs. 14534 records in RAM. INFO 2026-06-04 21:23:25 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:69,343,839 INFO 2026-06-04 21:23:25 MarkDuplicates Tracking 566083 as yet unmatched pairs. 12829 records in RAM. INFO 2026-06-04 21:23:27 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr10:73,799,446 INFO 2026-06-04 21:23:27 MarkDuplicates Tracking 564559 as yet unmatched pairs. 11295 records in RAM. INFO 2026-06-04 21:23:29 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:86,943,802 INFO 2026-06-04 21:23:29 MarkDuplicates Tracking 562374 as yet unmatched pairs. 9097 records in RAM. INFO 2026-06-04 21:23:31 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr10:95,621,041 INFO 2026-06-04 21:23:31 MarkDuplicates Tracking 560562 as yet unmatched pairs. 7274 records in RAM. INFO 2026-06-04 21:23:33 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:101,799,033 INFO 2026-06-04 21:23:33 MarkDuplicates Tracking 559112 as yet unmatched pairs. 5812 records in RAM. INFO 2026-06-04 21:23:34 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:109,680,770 INFO 2026-06-04 21:23:34 MarkDuplicates Tracking 556843 as yet unmatched pairs. 3523 records in RAM. INFO 2026-06-04 21:23:36 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:122,428,299 INFO 2026-06-04 21:23:36 MarkDuplicates Tracking 555236 as yet unmatched pairs. 1904 records in RAM. INFO 2026-06-04 21:23:38 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:205,357 INFO 2026-06-04 21:23:38 MarkDuplicates Tracking 553730 as yet unmatched pairs. 60624 records in RAM. INFO 2026-06-04 21:23:39 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:319,931 INFO 2026-06-04 21:23:39 MarkDuplicates Tracking 565471 as yet unmatched pairs. 72364 records in RAM. INFO 2026-06-04 21:23:41 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:791,858 INFO 2026-06-04 21:23:41 MarkDuplicates Tracking 549920 as yet unmatched pairs. 56801 records in RAM. INFO 2026-06-04 21:23:42 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:2,132,940 INFO 2026-06-04 21:23:42 MarkDuplicates Tracking 555789 as yet unmatched pairs. 62621 records in RAM. INFO 2026-06-04 21:23:44 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,546 INFO 2026-06-04 21:23:44 MarkDuplicates Tracking 561045 as yet unmatched pairs. 67872 records in RAM. INFO 2026-06-04 21:23:45 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:2,395,015 INFO 2026-06-04 21:23:45 MarkDuplicates Tracking 545437 as yet unmatched pairs. 52252 records in RAM. INFO 2026-06-04 21:23:47 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:6,615,521 INFO 2026-06-04 21:23:47 MarkDuplicates Tracking 542186 as yet unmatched pairs. 48993 records in RAM. INFO 2026-06-04 21:23:48 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:9,576,237 INFO 2026-06-04 21:23:48 MarkDuplicates Tracking 539937 as yet unmatched pairs. 46730 records in RAM. INFO 2026-06-04 21:23:50 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:14,517,886 INFO 2026-06-04 21:23:50 MarkDuplicates Tracking 539482 as yet unmatched pairs. 46258 records in RAM. INFO 2026-06-04 21:23:51 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:31,432,441 INFO 2026-06-04 21:23:51 MarkDuplicates Tracking 536449 as yet unmatched pairs. 43206 records in RAM. INFO 2026-06-04 21:23:53 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:35,221,690 INFO 2026-06-04 21:23:53 MarkDuplicates Tracking 536926 as yet unmatched pairs. 43677 records in RAM. INFO 2026-06-04 21:23:55 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:46,682,170 INFO 2026-06-04 21:23:55 MarkDuplicates Tracking 532842 as yet unmatched pairs. 39590 records in RAM. INFO 2026-06-04 21:23:56 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:57,236,674 INFO 2026-06-04 21:23:56 MarkDuplicates Tracking 530685 as yet unmatched pairs. 37424 records in RAM. INFO 2026-06-04 21:23:58 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:58,527,620 INFO 2026-06-04 21:23:58 MarkDuplicates Tracking 528856 as yet unmatched pairs. 35588 records in RAM. INFO 2026-06-04 21:24:00 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr11:61,965,009 INFO 2026-06-04 21:24:00 MarkDuplicates Tracking 530605 as yet unmatched pairs. 37328 records in RAM. INFO 2026-06-04 21:24:02 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,595,339 INFO 2026-06-04 21:24:02 MarkDuplicates Tracking 525443 as yet unmatched pairs. 32159 records in RAM. INFO 2026-06-04 21:24:04 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:63,974,722 INFO 2026-06-04 21:24:04 MarkDuplicates Tracking 524823 as yet unmatched pairs. 31535 records in RAM. INFO 2026-06-04 21:24:05 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:64,878,321 INFO 2026-06-04 21:24:05 MarkDuplicates Tracking 521844 as yet unmatched pairs. 28547 records in RAM. INFO 2026-06-04 21:24:07 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:65,553,753 INFO 2026-06-04 21:24:07 MarkDuplicates Tracking 519740 as yet unmatched pairs. 26371 records in RAM. INFO 2026-06-04 21:24:08 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:65,868,297 INFO 2026-06-04 21:24:08 MarkDuplicates Tracking 518149 as yet unmatched pairs. 24775 records in RAM. INFO 2026-06-04 21:24:10 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:66,437,102 INFO 2026-06-04 21:24:10 MarkDuplicates Tracking 515469 as yet unmatched pairs. 22089 records in RAM. INFO 2026-06-04 21:24:11 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:68,036,332 INFO 2026-06-04 21:24:11 MarkDuplicates Tracking 513966 as yet unmatched pairs. 20578 records in RAM. INFO 2026-06-04 21:24:12 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:70,153,055 INFO 2026-06-04 21:24:12 MarkDuplicates Tracking 512479 as yet unmatched pairs. 19083 records in RAM. INFO 2026-06-04 21:24:14 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:72,712,445 INFO 2026-06-04 21:24:14 MarkDuplicates Tracking 510140 as yet unmatched pairs. 16742 records in RAM. INFO 2026-06-04 21:24:15 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:75,566,926 INFO 2026-06-04 21:24:15 MarkDuplicates Tracking 515112 as yet unmatched pairs. 21701 records in RAM. INFO 2026-06-04 21:24:17 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:78,250,220 INFO 2026-06-04 21:24:17 MarkDuplicates Tracking 506370 as yet unmatched pairs. 12953 records in RAM. INFO 2026-06-04 21:24:19 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:94,821,643 INFO 2026-06-04 21:24:19 MarkDuplicates Tracking 505254 as yet unmatched pairs. 11815 records in RAM. INFO 2026-06-04 21:24:20 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:102,863,021 INFO 2026-06-04 21:24:20 MarkDuplicates Tracking 502922 as yet unmatched pairs. 9471 records in RAM. INFO 2026-06-04 21:24:22 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:112,094,836 INFO 2026-06-04 21:24:22 MarkDuplicates Tracking 501334 as yet unmatched pairs. 7868 records in RAM. INFO 2026-06-04 21:24:23 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,163 INFO 2026-06-04 21:24:23 MarkDuplicates Tracking 499388 as yet unmatched pairs. 5915 records in RAM. INFO 2026-06-04 21:24:25 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:119,285,251 INFO 2026-06-04 21:24:25 MarkDuplicates Tracking 497504 as yet unmatched pairs. 4021 records in RAM. INFO 2026-06-04 21:24:26 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:124,756,251 INFO 2026-06-04 21:24:26 MarkDuplicates Tracking 495542 as yet unmatched pairs. 2052 records in RAM. INFO 2026-06-04 21:24:28 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:133,921,294 INFO 2026-06-04 21:24:28 MarkDuplicates Tracking 493772 as yet unmatched pairs. 278 records in RAM. INFO 2026-06-04 21:24:31 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr12:884,190 INFO 2026-06-04 21:24:31 MarkDuplicates Tracking 494722 as yet unmatched pairs. 75070 records in RAM. INFO 2026-06-04 21:24:32 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr12:3,281,763 INFO 2026-06-04 21:24:32 MarkDuplicates Tracking 490482 as yet unmatched pairs. 70826 records in RAM. INFO 2026-06-04 21:24:34 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:6,587,478 INFO 2026-06-04 21:24:34 MarkDuplicates Tracking 488613 as yet unmatched pairs. 68955 records in RAM. INFO 2026-06-04 21:24:36 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr12:6,933,950 INFO 2026-06-04 21:24:36 MarkDuplicates Tracking 486842 as yet unmatched pairs. 67177 records in RAM. INFO 2026-06-04 21:24:37 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:7,921,607 INFO 2026-06-04 21:24:37 MarkDuplicates Tracking 487716 as yet unmatched pairs. 68043 records in RAM. INFO 2026-06-04 21:24:39 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:9,090,392 INFO 2026-06-04 21:24:39 MarkDuplicates Tracking 484510 as yet unmatched pairs. 64830 records in RAM. INFO 2026-06-04 21:24:40 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,249 INFO 2026-06-04 21:24:40 MarkDuplicates Tracking 481964 as yet unmatched pairs. 62267 records in RAM. INFO 2026-06-04 21:24:41 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:15,882,710 INFO 2026-06-04 21:24:41 MarkDuplicates Tracking 479985 as yet unmatched pairs. 60278 records in RAM. INFO 2026-06-04 21:24:43 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:26,064,840 INFO 2026-06-04 21:24:43 MarkDuplicates Tracking 478665 as yet unmatched pairs. 58941 records in RAM. INFO 2026-06-04 21:24:45 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:32,731,387 INFO 2026-06-04 21:24:45 MarkDuplicates Tracking 476414 as yet unmatched pairs. 56682 records in RAM. INFO 2026-06-04 21:24:46 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:47,797,038 INFO 2026-06-04 21:24:46 MarkDuplicates Tracking 474577 as yet unmatched pairs. 54841 records in RAM. INFO 2026-06-04 21:24:48 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,108 INFO 2026-06-04 21:24:48 MarkDuplicates Tracking 472809 as yet unmatched pairs. 53062 records in RAM. INFO 2026-06-04 21:24:49 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,166 INFO 2026-06-04 21:24:49 MarkDuplicates Tracking 474744 as yet unmatched pairs. 54992 records in RAM. INFO 2026-06-04 21:24:50 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,666,157 INFO 2026-06-04 21:24:50 MarkDuplicates Tracking 470116 as yet unmatched pairs. 50360 records in RAM. INFO 2026-06-04 21:24:52 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:51,913,166 INFO 2026-06-04 21:24:52 MarkDuplicates Tracking 468062 as yet unmatched pairs. 48294 records in RAM. INFO 2026-06-04 21:24:54 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,022,537 INFO 2026-06-04 21:24:54 MarkDuplicates Tracking 466952 as yet unmatched pairs. 47177 records in RAM. INFO 2026-06-04 21:24:55 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,053 INFO 2026-06-04 21:24:55 MarkDuplicates Tracking 467434 as yet unmatched pairs. 47650 records in RAM. INFO 2026-06-04 21:24:57 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,811 INFO 2026-06-04 21:24:57 MarkDuplicates Tracking 465010 as yet unmatched pairs. 45219 records in RAM. INFO 2026-06-04 21:24:59 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:55,819,406 INFO 2026-06-04 21:24:59 MarkDuplicates Tracking 460590 as yet unmatched pairs. 40794 records in RAM. INFO 2026-06-04 21:25:00 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:56,310,960 INFO 2026-06-04 21:25:00 MarkDuplicates Tracking 459113 as yet unmatched pairs. 39314 records in RAM. INFO 2026-06-04 21:25:03 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr12:56,688,067 INFO 2026-06-04 21:25:03 MarkDuplicates Tracking 457504 as yet unmatched pairs. 37699 records in RAM. INFO 2026-06-04 21:25:04 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,346 INFO 2026-06-04 21:25:04 MarkDuplicates Tracking 456703 as yet unmatched pairs. 36896 records in RAM. INFO 2026-06-04 21:25:06 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,536 INFO 2026-06-04 21:25:06 MarkDuplicates Tracking 455781 as yet unmatched pairs. 35973 records in RAM. INFO 2026-06-04 21:25:07 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:57,209,805 INFO 2026-06-04 21:25:07 MarkDuplicates Tracking 452129 as yet unmatched pairs. 32314 records in RAM. INFO 2026-06-04 21:25:09 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,535,762 INFO 2026-06-04 21:25:09 MarkDuplicates Tracking 450507 as yet unmatched pairs. 30687 records in RAM. INFO 2026-06-04 21:25:10 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:62,538,441 INFO 2026-06-04 21:25:10 MarkDuplicates Tracking 448345 as yet unmatched pairs. 28509 records in RAM. INFO 2026-06-04 21:25:12 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:68,650,428 INFO 2026-06-04 21:25:12 MarkDuplicates Tracking 448233 as yet unmatched pairs. 28380 records in RAM. INFO 2026-06-04 21:25:13 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,858 INFO 2026-06-04 21:25:13 MarkDuplicates Tracking 446871 as yet unmatched pairs. 27008 records in RAM. INFO 2026-06-04 21:25:15 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:89,349,298 INFO 2026-06-04 21:25:15 MarkDuplicates Tracking 444527 as yet unmatched pairs. 24655 records in RAM. INFO 2026-06-04 21:25:16 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:91,178,420 INFO 2026-06-04 21:25:16 MarkDuplicates Tracking 445217 as yet unmatched pairs. 25335 records in RAM. INFO 2026-06-04 21:25:18 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:98,634,341 INFO 2026-06-04 21:25:18 MarkDuplicates Tracking 439713 as yet unmatched pairs. 19814 records in RAM. INFO 2026-06-04 21:25:19 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:103,947,313 INFO 2026-06-04 21:25:19 MarkDuplicates Tracking 439859 as yet unmatched pairs. 19955 records in RAM. INFO 2026-06-04 21:25:21 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,741 INFO 2026-06-04 21:25:21 MarkDuplicates Tracking 436005 as yet unmatched pairs. 16093 records in RAM. INFO 2026-06-04 21:25:23 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:111,418,384 INFO 2026-06-04 21:25:23 MarkDuplicates Tracking 434808 as yet unmatched pairs. 14891 records in RAM. INFO 2026-06-04 21:25:25 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:112,917,615 INFO 2026-06-04 21:25:25 MarkDuplicates Tracking 433188 as yet unmatched pairs. 13264 records in RAM. INFO 2026-06-04 21:25:26 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:117,189,269 INFO 2026-06-04 21:25:26 MarkDuplicates Tracking 430079 as yet unmatched pairs. 10141 records in RAM. INFO 2026-06-04 21:25:28 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:120,575,842 INFO 2026-06-04 21:25:28 MarkDuplicates Tracking 429186 as yet unmatched pairs. 9242 records in RAM. INFO 2026-06-04 21:25:29 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:122,867,168 INFO 2026-06-04 21:25:29 MarkDuplicates Tracking 426707 as yet unmatched pairs. 6757 records in RAM. INFO 2026-06-04 21:25:31 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:124,340,008 INFO 2026-06-04 21:25:31 MarkDuplicates Tracking 425807 as yet unmatched pairs. 5849 records in RAM. INFO 2026-06-04 21:25:33 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:124,947,804 INFO 2026-06-04 21:25:33 MarkDuplicates Tracking 422974 as yet unmatched pairs. 3012 records in RAM. INFO 2026-06-04 21:25:34 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:132,730,088 INFO 2026-06-04 21:25:34 MarkDuplicates Tracking 421407 as yet unmatched pairs. 1431 records in RAM. INFO 2026-06-04 21:25:36 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr13:20,058,596 INFO 2026-06-04 21:25:36 MarkDuplicates Tracking 420531 as yet unmatched pairs. 26393 records in RAM. INFO 2026-06-04 21:25:37 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr13:26,214,826 INFO 2026-06-04 21:25:37 MarkDuplicates Tracking 417639 as yet unmatched pairs. 23488 records in RAM. INFO 2026-06-04 21:25:39 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr13:32,648,765 INFO 2026-06-04 21:25:39 MarkDuplicates Tracking 415945 as yet unmatched pairs. 21781 records in RAM. INFO 2026-06-04 21:25:41 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr13:37,570,578 INFO 2026-06-04 21:25:41 MarkDuplicates Tracking 423028 as yet unmatched pairs. 28859 records in RAM. INFO 2026-06-04 21:25:42 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:37,586,843 INFO 2026-06-04 21:25:42 MarkDuplicates Tracking 421086 as yet unmatched pairs. 26911 records in RAM. INFO 2026-06-04 21:25:44 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:42,991,987 INFO 2026-06-04 21:25:44 MarkDuplicates Tracking 410732 as yet unmatched pairs. 16539 records in RAM. INFO 2026-06-04 21:25:45 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:48,253,828 INFO 2026-06-04 21:25:45 MarkDuplicates Tracking 412533 as yet unmatched pairs. 18323 records in RAM. INFO 2026-06-04 21:25:47 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr13:67,227,033 INFO 2026-06-04 21:25:47 MarkDuplicates Tracking 407218 as yet unmatched pairs. 13006 records in RAM. INFO 2026-06-04 21:25:48 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:80,336,894 INFO 2026-06-04 21:25:48 MarkDuplicates Tracking 407404 as yet unmatched pairs. 13172 records in RAM. INFO 2026-06-04 21:25:50 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:99,529,554 INFO 2026-06-04 21:25:50 MarkDuplicates Tracking 404112 as yet unmatched pairs. 9875 records in RAM. INFO 2026-06-04 21:25:52 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr13:110,167,158 INFO 2026-06-04 21:25:52 MarkDuplicates Tracking 402587 as yet unmatched pairs. 8312 records in RAM. INFO 2026-06-04 21:25:54 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:110,213,797 INFO 2026-06-04 21:25:54 MarkDuplicates Tracking 401870 as yet unmatched pairs. 7589 records in RAM. INFO 2026-06-04 21:25:55 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:110,489,766 INFO 2026-06-04 21:25:55 MarkDuplicates Tracking 398440 as yet unmatched pairs. 4155 records in RAM. INFO 2026-06-04 21:25:57 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:113,495,554 INFO 2026-06-04 21:25:57 MarkDuplicates Tracking 395321 as yet unmatched pairs. 1026 records in RAM. INFO 2026-06-04 21:25:58 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:21,213,057 INFO 2026-06-04 21:25:58 MarkDuplicates Tracking 394119 as yet unmatched pairs. 21412 records in RAM. INFO 2026-06-04 21:26:00 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:23,059,204 INFO 2026-06-04 21:26:00 MarkDuplicates Tracking 391632 as yet unmatched pairs. 18924 records in RAM. INFO 2026-06-04 21:26:01 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:24,436,830 INFO 2026-06-04 21:26:01 MarkDuplicates Tracking 389609 as yet unmatched pairs. 16887 records in RAM. INFO 2026-06-04 21:26:03 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:41,891,489 INFO 2026-06-04 21:26:03 MarkDuplicates Tracking 387916 as yet unmatched pairs. 15174 records in RAM. INFO 2026-06-04 21:26:04 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:52,707,237 INFO 2026-06-04 21:26:04 MarkDuplicates Tracking 386155 as yet unmatched pairs. 13403 records in RAM. INFO 2026-06-04 21:26:06 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:61,740,903 INFO 2026-06-04 21:26:06 MarkDuplicates Tracking 385281 as yet unmatched pairs. 12525 records in RAM. INFO 2026-06-04 21:26:07 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:69,768,169 INFO 2026-06-04 21:26:07 MarkDuplicates Tracking 383098 as yet unmatched pairs. 10326 records in RAM. INFO 2026-06-04 21:26:09 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:74,809,399 INFO 2026-06-04 21:26:09 MarkDuplicates Tracking 380773 as yet unmatched pairs. 7997 records in RAM. INFO 2026-06-04 21:26:10 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:77,279,508 INFO 2026-06-04 21:26:10 MarkDuplicates Tracking 378880 as yet unmatched pairs. 6103 records in RAM. INFO 2026-06-04 21:26:11 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:94,100,800 INFO 2026-06-04 21:26:11 MarkDuplicates Tracking 377106 as yet unmatched pairs. 4306 records in RAM. INFO 2026-06-04 21:26:13 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:102,033,266 INFO 2026-06-04 21:26:13 MarkDuplicates Tracking 375529 as yet unmatched pairs. 2707 records in RAM. INFO 2026-06-04 21:26:14 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:104,773,535 INFO 2026-06-04 21:26:14 MarkDuplicates Tracking 373735 as yet unmatched pairs. 907 records in RAM. INFO 2026-06-04 21:26:16 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr15:28,233,493 INFO 2026-06-04 21:26:16 MarkDuplicates Tracking 371939 as yet unmatched pairs. 32789 records in RAM. INFO 2026-06-04 21:26:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,178 INFO 2026-06-04 21:26:18 MarkDuplicates Tracking 370274 as yet unmatched pairs. 31115 records in RAM. INFO 2026-06-04 21:26:19 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr15:41,696,744 INFO 2026-06-04 21:26:19 MarkDuplicates Tracking 368762 as yet unmatched pairs. 29591 records in RAM. INFO 2026-06-04 21:26:20 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:43,521,322 INFO 2026-06-04 21:26:20 MarkDuplicates Tracking 366824 as yet unmatched pairs. 27650 records in RAM. INFO 2026-06-04 21:26:22 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,743 INFO 2026-06-04 21:26:22 MarkDuplicates Tracking 369461 as yet unmatched pairs. 30286 records in RAM. INFO 2026-06-04 21:26:23 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:48,537,797 INFO 2026-06-04 21:26:23 MarkDuplicates Tracking 363702 as yet unmatched pairs. 24521 records in RAM. INFO 2026-06-04 21:26:25 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr15:55,360,237 INFO 2026-06-04 21:26:25 MarkDuplicates Tracking 361936 as yet unmatched pairs. 22752 records in RAM. INFO 2026-06-04 21:26:26 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:59,107,374 INFO 2026-06-04 21:26:26 MarkDuplicates Tracking 359826 as yet unmatched pairs. 20634 records in RAM. INFO 2026-06-04 21:26:28 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr15:64,130,237 INFO 2026-06-04 21:26:28 MarkDuplicates Tracking 358176 as yet unmatched pairs. 18970 records in RAM. INFO 2026-06-04 21:26:30 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr15:66,436,768 INFO 2026-06-04 21:26:30 MarkDuplicates Tracking 356137 as yet unmatched pairs. 16926 records in RAM. INFO 2026-06-04 21:26:32 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:70,832,421 INFO 2026-06-04 21:26:32 MarkDuplicates Tracking 354219 as yet unmatched pairs. 15000 records in RAM. INFO 2026-06-04 21:26:33 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:73,702,776 INFO 2026-06-04 21:26:33 MarkDuplicates Tracking 353954 as yet unmatched pairs. 14724 records in RAM. INFO 2026-06-04 21:26:35 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr15:74,175,351 INFO 2026-06-04 21:26:35 MarkDuplicates Tracking 352040 as yet unmatched pairs. 12808 records in RAM. INFO 2026-06-04 21:26:37 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:75,675,906 INFO 2026-06-04 21:26:37 MarkDuplicates Tracking 348597 as yet unmatched pairs. 9359 records in RAM. INFO 2026-06-04 21:26:38 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:78,886,158 INFO 2026-06-04 21:26:38 MarkDuplicates Tracking 349156 as yet unmatched pairs. 9907 records in RAM. INFO 2026-06-04 21:26:40 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:84,797,888 INFO 2026-06-04 21:26:40 MarkDuplicates Tracking 345038 as yet unmatched pairs. 5777 records in RAM. INFO 2026-06-04 21:26:41 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:88,913,304 INFO 2026-06-04 21:26:41 MarkDuplicates Tracking 342986 as yet unmatched pairs. 3714 records in RAM. INFO 2026-06-04 21:26:43 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:92,924,388 INFO 2026-06-04 21:26:43 MarkDuplicates Tracking 341559 as yet unmatched pairs. 2278 records in RAM. INFO 2026-06-04 21:26:44 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:101,973,712 INFO 2026-06-04 21:26:44 MarkDuplicates Tracking 339312 as yet unmatched pairs. 17 records in RAM. INFO 2026-06-04 21:26:46 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:796,961 INFO 2026-06-04 21:26:46 MarkDuplicates Tracking 337358 as yet unmatched pairs. 42596 records in RAM. INFO 2026-06-04 21:26:48 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:2,091,492 INFO 2026-06-04 21:26:48 MarkDuplicates Tracking 335613 as yet unmatched pairs. 40843 records in RAM. INFO 2026-06-04 21:26:49 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,677 INFO 2026-06-04 21:26:49 MarkDuplicates Tracking 334331 as yet unmatched pairs. 39558 records in RAM. INFO 2026-06-04 21:26:51 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:2,771,985 INFO 2026-06-04 21:26:51 MarkDuplicates Tracking 333852 as yet unmatched pairs. 39077 records in RAM. INFO 2026-06-04 21:26:52 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:4,455,558 INFO 2026-06-04 21:26:52 MarkDuplicates Tracking 329516 as yet unmatched pairs. 34739 records in RAM. INFO 2026-06-04 21:26:53 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:14,140,660 INFO 2026-06-04 21:26:53 MarkDuplicates Tracking 328195 as yet unmatched pairs. 33407 records in RAM. INFO 2026-06-04 21:26:55 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:15,036,122 INFO 2026-06-04 21:26:55 MarkDuplicates Tracking 326717 as yet unmatched pairs. 31925 records in RAM. INFO 2026-06-04 21:26:56 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:16,340,320 INFO 2026-06-04 21:26:56 MarkDuplicates Tracking 326180 as yet unmatched pairs. 31384 records in RAM. INFO 2026-06-04 21:26:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:18,364,311 INFO 2026-06-04 21:26:57 MarkDuplicates Tracking 325741 as yet unmatched pairs. 30945 records in RAM. INFO 2026-06-04 21:26:58 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:19,172,303 INFO 2026-06-04 21:26:58 MarkDuplicates Tracking 323863 as yet unmatched pairs. 29067 records in RAM. INFO 2026-06-04 21:27:00 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,497 INFO 2026-06-04 21:27:00 MarkDuplicates Tracking 323545 as yet unmatched pairs. 28744 records in RAM. INFO 2026-06-04 21:27:01 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,700 INFO 2026-06-04 21:27:01 MarkDuplicates Tracking 322752 as yet unmatched pairs. 27948 records in RAM. INFO 2026-06-04 21:27:02 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:28,111,982 INFO 2026-06-04 21:27:02 MarkDuplicates Tracking 321052 as yet unmatched pairs. 26232 records in RAM. INFO 2026-06-04 21:27:04 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,985,493 INFO 2026-06-04 21:27:04 MarkDuplicates Tracking 319302 as yet unmatched pairs. 24481 records in RAM. INFO 2026-06-04 21:27:05 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:29,810,324 INFO 2026-06-04 21:27:05 MarkDuplicates Tracking 318339 as yet unmatched pairs. 23518 records in RAM. INFO 2026-06-04 21:27:06 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:30,123,040 INFO 2026-06-04 21:27:06 MarkDuplicates Tracking 316172 as yet unmatched pairs. 21350 records in RAM. INFO 2026-06-04 21:27:08 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,729,099 INFO 2026-06-04 21:27:08 MarkDuplicates Tracking 315022 as yet unmatched pairs. 20197 records in RAM. INFO 2026-06-04 21:27:09 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,736 INFO 2026-06-04 21:27:09 MarkDuplicates Tracking 316638 as yet unmatched pairs. 21809 records in RAM. INFO 2026-06-04 21:27:11 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:48,561,936 INFO 2026-06-04 21:27:11 MarkDuplicates Tracking 311390 as yet unmatched pairs. 16558 records in RAM. INFO 2026-06-04 21:27:12 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:56,626,883 INFO 2026-06-04 21:27:12 MarkDuplicates Tracking 309563 as yet unmatched pairs. 14719 records in RAM. INFO 2026-06-04 21:27:14 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:66,608,396 INFO 2026-06-04 21:27:14 MarkDuplicates Tracking 308008 as yet unmatched pairs. 13146 records in RAM. INFO 2026-06-04 21:27:16 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr16:67,880,808 INFO 2026-06-04 21:27:16 MarkDuplicates Tracking 305589 as yet unmatched pairs. 10723 records in RAM. INFO 2026-06-04 21:27:17 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:70,264,802 INFO 2026-06-04 21:27:17 MarkDuplicates Tracking 303862 as yet unmatched pairs. 8991 records in RAM. INFO 2026-06-04 21:27:19 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,540 INFO 2026-06-04 21:27:19 MarkDuplicates Tracking 302101 as yet unmatched pairs. 7229 records in RAM. INFO 2026-06-04 21:27:21 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:81,043,158 INFO 2026-06-04 21:27:21 MarkDuplicates Tracking 300080 as yet unmatched pairs. 5202 records in RAM. INFO 2026-06-04 21:27:23 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:88,429,236 INFO 2026-06-04 21:27:23 MarkDuplicates Tracking 298198 as yet unmatched pairs. 3313 records in RAM. INFO 2026-06-04 21:27:24 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:89,560,986 INFO 2026-06-04 21:27:24 MarkDuplicates Tracking 297181 as yet unmatched pairs. 2291 records in RAM. INFO 2026-06-04 21:27:26 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,243 INFO 2026-06-04 21:27:26 MarkDuplicates Tracking 298581 as yet unmatched pairs. 110438 records in RAM. INFO 2026-06-04 21:27:28 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:1,728,108 INFO 2026-06-04 21:27:28 MarkDuplicates Tracking 292302 as yet unmatched pairs. 104158 records in RAM. INFO 2026-06-04 21:27:30 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,177,151 INFO 2026-06-04 21:27:30 MarkDuplicates Tracking 290246 as yet unmatched pairs. 102096 records in RAM. INFO 2026-06-04 21:27:31 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:6,622,926 INFO 2026-06-04 21:27:31 MarkDuplicates Tracking 288339 as yet unmatched pairs. 100188 records in RAM. INFO 2026-06-04 21:27:33 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,408,492 INFO 2026-06-04 21:27:33 MarkDuplicates Tracking 286468 as yet unmatched pairs. 98315 records in RAM. INFO 2026-06-04 21:27:34 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:7,577,895 INFO 2026-06-04 21:27:34 MarkDuplicates Tracking 285818 as yet unmatched pairs. 97662 records in RAM. INFO 2026-06-04 21:27:35 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,931,764 INFO 2026-06-04 21:27:35 MarkDuplicates Tracking 283255 as yet unmatched pairs. 95098 records in RAM. INFO 2026-06-04 21:27:37 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:13,601,033 INFO 2026-06-04 21:27:37 MarkDuplicates Tracking 281219 as yet unmatched pairs. 93057 records in RAM. INFO 2026-06-04 21:27:39 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:17,158,925 INFO 2026-06-04 21:27:39 MarkDuplicates Tracking 280620 as yet unmatched pairs. 92457 records in RAM. INFO 2026-06-04 21:27:40 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:19,380,686 INFO 2026-06-04 21:27:40 MarkDuplicates Tracking 277796 as yet unmatched pairs. 89633 records in RAM. INFO 2026-06-04 21:27:42 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:28,678,559 INFO 2026-06-04 21:27:42 MarkDuplicates Tracking 275896 as yet unmatched pairs. 87730 records in RAM. INFO 2026-06-04 21:27:44 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:31,095,334 INFO 2026-06-04 21:27:44 MarkDuplicates Tracking 274421 as yet unmatched pairs. 86243 records in RAM. INFO 2026-06-04 21:27:46 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr17:35,021,397 INFO 2026-06-04 21:27:46 MarkDuplicates Tracking 272385 as yet unmatched pairs. 84207 records in RAM. INFO 2026-06-04 21:27:48 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:37,577,509 INFO 2026-06-04 21:27:48 MarkDuplicates Tracking 270779 as yet unmatched pairs. 82600 records in RAM. INFO 2026-06-04 21:27:49 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,105,854 INFO 2026-06-04 21:27:49 MarkDuplicates Tracking 269732 as yet unmatched pairs. 81553 records in RAM. INFO 2026-06-04 21:27:51 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:40,273,970 INFO 2026-06-04 21:27:51 MarkDuplicates Tracking 267218 as yet unmatched pairs. 79036 records in RAM. INFO 2026-06-04 21:27:52 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:41,896,614 INFO 2026-06-04 21:27:52 MarkDuplicates Tracking 265492 as yet unmatched pairs. 77306 records in RAM. INFO 2026-06-04 21:27:54 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:42,676,418 INFO 2026-06-04 21:27:54 MarkDuplicates Tracking 263337 as yet unmatched pairs. 75147 records in RAM. INFO 2026-06-04 21:27:56 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:44,082,785 INFO 2026-06-04 21:27:56 MarkDuplicates Tracking 261747 as yet unmatched pairs. 73554 records in RAM. INFO 2026-06-04 21:27:57 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:45,475,676 INFO 2026-06-04 21:27:57 MarkDuplicates Tracking 259545 as yet unmatched pairs. 71352 records in RAM. INFO 2026-06-04 21:27:58 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:47,696,184 INFO 2026-06-04 21:27:58 MarkDuplicates Tracking 258143 as yet unmatched pairs. 69948 records in RAM. INFO 2026-06-04 21:30:01 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 122s. Last read position: chr17:50,150,354 INFO 2026-06-04 21:30:01 MarkDuplicates Tracking 256474 as yet unmatched pairs. 68279 records in RAM. INFO 2026-06-04 21:30:03 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,888 INFO 2026-06-04 21:30:03 MarkDuplicates Tracking 265735 as yet unmatched pairs. 77538 records in RAM. INFO 2026-06-04 21:30:05 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,676 INFO 2026-06-04 21:30:05 MarkDuplicates Tracking 266551 as yet unmatched pairs. 78354 records in RAM. INFO 2026-06-04 21:30:06 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014 INFO 2026-06-04 21:30:06 MarkDuplicates Tracking 306654 as yet unmatched pairs. 118456 records in RAM. INFO 2026-06-04 21:30:08 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,905 INFO 2026-06-04 21:30:08 MarkDuplicates Tracking 281323 as yet unmatched pairs. 93124 records in RAM. INFO 2026-06-04 21:30:10 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,565 INFO 2026-06-04 21:30:10 MarkDuplicates Tracking 278275 as yet unmatched pairs. 90075 records in RAM. INFO 2026-06-04 21:30:11 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,963 INFO 2026-06-04 21:30:11 MarkDuplicates Tracking 282954 as yet unmatched pairs. 94753 records in RAM. INFO 2026-06-04 21:30:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,438 INFO 2026-06-04 21:30:13 MarkDuplicates Tracking 278599 as yet unmatched pairs. 90398 records in RAM. INFO 2026-06-04 21:30:15 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,861 INFO 2026-06-04 21:30:15 MarkDuplicates Tracking 286852 as yet unmatched pairs. 98649 records in RAM. INFO 2026-06-04 21:30:17 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,335 INFO 2026-06-04 21:30:17 MarkDuplicates Tracking 308001 as yet unmatched pairs. 119791 records in RAM. INFO 2026-06-04 21:30:19 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,442 INFO 2026-06-04 21:30:19 MarkDuplicates Tracking 268657 as yet unmatched pairs. 80446 records in RAM. INFO 2026-06-04 21:30:21 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,664 INFO 2026-06-04 21:30:21 MarkDuplicates Tracking 273411 as yet unmatched pairs. 85197 records in RAM. INFO 2026-06-04 21:30:23 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,947 INFO 2026-06-04 21:30:23 MarkDuplicates Tracking 276913 as yet unmatched pairs. 88696 records in RAM. INFO 2026-06-04 21:30:25 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,156 INFO 2026-06-04 21:30:25 MarkDuplicates Tracking 302778 as yet unmatched pairs. 114556 records in RAM. INFO 2026-06-04 21:30:27 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,728 INFO 2026-06-04 21:30:27 MarkDuplicates Tracking 267229 as yet unmatched pairs. 79006 records in RAM. INFO 2026-06-04 21:30:28 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,430 INFO 2026-06-04 21:30:28 MarkDuplicates Tracking 247100 as yet unmatched pairs. 58871 records in RAM. INFO 2026-06-04 21:30:30 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,964 INFO 2026-06-04 21:30:30 MarkDuplicates Tracking 257662 as yet unmatched pairs. 69426 records in RAM. INFO 2026-06-04 21:30:31 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,335 INFO 2026-06-04 21:30:31 MarkDuplicates Tracking 280550 as yet unmatched pairs. 92313 records in RAM. INFO 2026-06-04 21:30:33 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,030 INFO 2026-06-04 21:30:33 MarkDuplicates Tracking 277895 as yet unmatched pairs. 89658 records in RAM. INFO 2026-06-04 21:30:35 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,176 INFO 2026-06-04 21:30:35 MarkDuplicates Tracking 244230 as yet unmatched pairs. 55988 records in RAM. INFO 2026-06-04 21:30:36 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,281 INFO 2026-06-04 21:30:36 MarkDuplicates Tracking 257793 as yet unmatched pairs. 69546 records in RAM. INFO 2026-06-04 21:30:38 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,823 INFO 2026-06-04 21:30:38 MarkDuplicates Tracking 235538 as yet unmatched pairs. 47291 records in RAM. INFO 2026-06-04 21:30:39 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,985,769 INFO 2026-06-04 21:30:39 MarkDuplicates Tracking 212814 as yet unmatched pairs. 24558 records in RAM. INFO 2026-06-04 21:30:41 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,388 INFO 2026-06-04 21:30:41 MarkDuplicates Tracking 213517 as yet unmatched pairs. 25260 records in RAM. INFO 2026-06-04 21:30:42 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:59,838,345 INFO 2026-06-04 21:30:42 MarkDuplicates Tracking 210218 as yet unmatched pairs. 21957 records in RAM. INFO 2026-06-04 21:30:45 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr17:62,677,476 INFO 2026-06-04 21:30:45 MarkDuplicates Tracking 207260 as yet unmatched pairs. 18995 records in RAM. INFO 2026-06-04 21:30:47 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:64,500,023 INFO 2026-06-04 21:30:47 MarkDuplicates Tracking 206538 as yet unmatched pairs. 18273 records in RAM. INFO 2026-06-04 21:30:49 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:67,966,600 INFO 2026-06-04 21:30:49 MarkDuplicates Tracking 203425 as yet unmatched pairs. 15156 records in RAM. INFO 2026-06-04 21:30:50 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:68,530,320 INFO 2026-06-04 21:30:50 MarkDuplicates Tracking 207766 as yet unmatched pairs. 19495 records in RAM. INFO 2026-06-04 21:30:52 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:75,501,520 INFO 2026-06-04 21:30:52 MarkDuplicates Tracking 199780 as yet unmatched pairs. 11505 records in RAM. INFO 2026-06-04 21:30:53 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,181 INFO 2026-06-04 21:30:53 MarkDuplicates Tracking 198500 as yet unmatched pairs. 10225 records in RAM. INFO 2026-06-04 21:30:55 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,583 INFO 2026-06-04 21:30:55 MarkDuplicates Tracking 196717 as yet unmatched pairs. 8440 records in RAM. INFO 2026-06-04 21:30:56 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr17:80,383,809 INFO 2026-06-04 21:30:56 MarkDuplicates Tracking 194298 as yet unmatched pairs. 6017 records in RAM. INFO 2026-06-04 21:30:58 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr17:81,824,325 INFO 2026-06-04 21:30:58 MarkDuplicates Tracking 192095 as yet unmatched pairs. 3806 records in RAM. INFO 2026-06-04 21:30:59 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,508 INFO 2026-06-04 21:30:59 MarkDuplicates Tracking 190128 as yet unmatched pairs. 1839 records in RAM. INFO 2026-06-04 21:31:00 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr18:2,674,128 INFO 2026-06-04 21:31:00 MarkDuplicates Tracking 188290 as yet unmatched pairs. 11053 records in RAM. INFO 2026-06-04 21:31:02 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr18:10,979,547 INFO 2026-06-04 21:31:02 MarkDuplicates Tracking 186631 as yet unmatched pairs. 9393 records in RAM. INFO 2026-06-04 21:31:03 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr18:26,035,079 INFO 2026-06-04 21:31:03 MarkDuplicates Tracking 185119 as yet unmatched pairs. 7872 records in RAM. INFO 2026-06-04 21:31:05 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr18:46,089,591 INFO 2026-06-04 21:31:05 MarkDuplicates Tracking 182953 as yet unmatched pairs. 5704 records in RAM. INFO 2026-06-04 21:31:06 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr18:55,275,619 INFO 2026-06-04 21:31:06 MarkDuplicates Tracking 187081 as yet unmatched pairs. 9826 records in RAM. INFO 2026-06-04 21:31:08 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr18:62,978,999 INFO 2026-06-04 21:31:08 MarkDuplicates Tracking 178995 as yet unmatched pairs. 1739 records in RAM. INFO 2026-06-04 21:31:10 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 2s. Last read position: chr19:579,570 INFO 2026-06-04 21:31:10 MarkDuplicates Tracking 178363 as yet unmatched pairs. 71827 records in RAM. INFO 2026-06-04 21:31:12 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,230,022 INFO 2026-06-04 21:31:12 MarkDuplicates Tracking 174967 as yet unmatched pairs. 68427 records in RAM. INFO 2026-06-04 21:31:14 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr19:1,979,494 INFO 2026-06-04 21:31:14 MarkDuplicates Tracking 173157 as yet unmatched pairs. 66616 records in RAM. INFO 2026-06-04 21:31:16 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr19:3,366,632 INFO 2026-06-04 21:31:16 MarkDuplicates Tracking 171182 as yet unmatched pairs. 64632 records in RAM. INFO 2026-06-04 21:31:17 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:4,475,499 INFO 2026-06-04 21:31:17 MarkDuplicates Tracking 168896 as yet unmatched pairs. 62334 records in RAM. INFO 2026-06-04 21:31:19 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr19:5,790,089 INFO 2026-06-04 21:31:19 MarkDuplicates Tracking 166821 as yet unmatched pairs. 60259 records in RAM. INFO 2026-06-04 21:31:20 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:8,321,541 INFO 2026-06-04 21:31:20 MarkDuplicates Tracking 165675 as yet unmatched pairs. 59108 records in RAM. INFO 2026-06-04 21:31:22 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:10,162,667 INFO 2026-06-04 21:31:22 MarkDuplicates Tracking 163160 as yet unmatched pairs. 56591 records in RAM. INFO 2026-06-04 21:31:23 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,986,571 INFO 2026-06-04 21:31:23 MarkDuplicates Tracking 161568 as yet unmatched pairs. 54998 records in RAM. INFO 2026-06-04 21:31:25 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:11,364,382 INFO 2026-06-04 21:31:25 MarkDuplicates Tracking 158976 as yet unmatched pairs. 52406 records in RAM. INFO 2026-06-04 21:31:26 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,312 INFO 2026-06-04 21:31:26 MarkDuplicates Tracking 157379 as yet unmatched pairs. 50804 records in RAM. INFO 2026-06-04 21:31:28 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:13,912,324 INFO 2026-06-04 21:31:28 MarkDuplicates Tracking 154909 as yet unmatched pairs. 48333 records in RAM. INFO 2026-06-04 21:31:29 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,575 INFO 2026-06-04 21:31:29 MarkDuplicates Tracking 157323 as yet unmatched pairs. 50746 records in RAM. INFO 2026-06-04 21:31:31 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:15,181,698 INFO 2026-06-04 21:31:31 MarkDuplicates Tracking 152079 as yet unmatched pairs. 45501 records in RAM. INFO 2026-06-04 21:31:33 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr19:15,265,451 INFO 2026-06-04 21:31:33 MarkDuplicates Tracking 151851 as yet unmatched pairs. 45273 records in RAM. INFO 2026-06-04 21:31:34 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:17,162,445 INFO 2026-06-04 21:31:34 MarkDuplicates Tracking 147504 as yet unmatched pairs. 40924 records in RAM. INFO 2026-06-04 21:31:35 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,986 INFO 2026-06-04 21:31:35 MarkDuplicates Tracking 146227 as yet unmatched pairs. 39645 records in RAM. INFO 2026-06-04 21:31:37 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr19:18,435,891 INFO 2026-06-04 21:31:37 MarkDuplicates Tracking 143327 as yet unmatched pairs. 36744 records in RAM. INFO 2026-06-04 21:31:39 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:19,647,496 INFO 2026-06-04 21:31:39 MarkDuplicates Tracking 141317 as yet unmatched pairs. 34730 records in RAM. INFO 2026-06-04 21:31:41 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:34,500,159 INFO 2026-06-04 21:31:41 MarkDuplicates Tracking 139306 as yet unmatched pairs. 32717 records in RAM. INFO 2026-06-04 21:31:43 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr19:36,547,104 INFO 2026-06-04 21:31:43 MarkDuplicates Tracking 137186 as yet unmatched pairs. 30594 records in RAM. INFO 2026-06-04 21:31:45 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,383,701 INFO 2026-06-04 21:31:45 MarkDuplicates Tracking 135458 as yet unmatched pairs. 28864 records in RAM. INFO 2026-06-04 21:31:46 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,824,998 INFO 2026-06-04 21:31:46 MarkDuplicates Tracking 133318 as yet unmatched pairs. 26723 records in RAM. INFO 2026-06-04 21:31:48 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,230,982 INFO 2026-06-04 21:31:48 MarkDuplicates Tracking 131381 as yet unmatched pairs. 24784 records in RAM. INFO 2026-06-04 21:31:49 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:42,250,528 INFO 2026-06-04 21:31:49 MarkDuplicates Tracking 129838 as yet unmatched pairs. 23240 records in RAM. INFO 2026-06-04 21:31:51 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:42,362,125 INFO 2026-06-04 21:31:51 MarkDuplicates Tracking 127683 as yet unmatched pairs. 21085 records in RAM. INFO 2026-06-04 21:31:53 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:45,409,687 INFO 2026-06-04 21:31:53 MarkDuplicates Tracking 125964 as yet unmatched pairs. 19348 records in RAM. INFO 2026-06-04 21:31:54 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:45,816,504 INFO 2026-06-04 21:31:54 MarkDuplicates Tracking 123623 as yet unmatched pairs. 17005 records in RAM. INFO 2026-06-04 21:31:56 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:47,319,973 INFO 2026-06-04 21:31:56 MarkDuplicates Tracking 121927 as yet unmatched pairs. 15309 records in RAM. INFO 2026-06-04 21:31:58 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:48,874,097 INFO 2026-06-04 21:31:58 MarkDuplicates Tracking 120174 as yet unmatched pairs. 13555 records in RAM. INFO 2026-06-04 21:31:59 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:49,499,522 INFO 2026-06-04 21:31:59 MarkDuplicates Tracking 118764 as yet unmatched pairs. 12135 records in RAM. INFO 2026-06-04 21:32:01 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:49,857,921 INFO 2026-06-04 21:32:01 MarkDuplicates Tracking 116361 as yet unmatched pairs. 9732 records in RAM. INFO 2026-06-04 21:32:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:52,374,345 INFO 2026-06-04 21:32:02 MarkDuplicates Tracking 113631 as yet unmatched pairs. 7002 records in RAM. INFO 2026-06-04 21:32:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr19:54,452,715 INFO 2026-06-04 21:32:04 MarkDuplicates Tracking 112704 as yet unmatched pairs. 6070 records in RAM. INFO 2026-06-04 21:32:06 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:55,482,923 INFO 2026-06-04 21:32:06 MarkDuplicates Tracking 109791 as yet unmatched pairs. 3155 records in RAM. INFO 2026-06-04 21:32:07 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:57,826,714 INFO 2026-06-04 21:32:07 MarkDuplicates Tracking 108077 as yet unmatched pairs. 1440 records in RAM. INFO 2026-06-04 21:32:09 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr20:1,370,017 INFO 2026-06-04 21:32:09 MarkDuplicates Tracking 109139 as yet unmatched pairs. 31326 records in RAM. INFO 2026-06-04 21:32:10 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr20:3,784,987 INFO 2026-06-04 21:32:10 MarkDuplicates Tracking 104159 as yet unmatched pairs. 26341 records in RAM. INFO 2026-06-04 21:32:12 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr20:17,658,604 INFO 2026-06-04 21:32:12 MarkDuplicates Tracking 102994 as yet unmatched pairs. 25175 records in RAM. INFO 2026-06-04 21:32:13 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,926 INFO 2026-06-04 21:32:13 MarkDuplicates Tracking 101572 as yet unmatched pairs. 23753 records in RAM. INFO 2026-06-04 21:32:15 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr20:33,686,074 INFO 2026-06-04 21:32:15 MarkDuplicates Tracking 98519 as yet unmatched pairs. 20697 records in RAM. INFO 2026-06-04 21:32:16 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr20:35,699,430 INFO 2026-06-04 21:32:16 MarkDuplicates Tracking 96858 as yet unmatched pairs. 19033 records in RAM. INFO 2026-06-04 21:32:18 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr20:38,983,767 INFO 2026-06-04 21:32:18 MarkDuplicates Tracking 94769 as yet unmatched pairs. 16941 records in RAM. INFO 2026-06-04 21:32:20 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr20:45,425,676 INFO 2026-06-04 21:32:20 MarkDuplicates Tracking 93185 as yet unmatched pairs. 15354 records in RAM. INFO 2026-06-04 21:32:21 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr20:46,012,462 INFO 2026-06-04 21:32:21 MarkDuplicates Tracking 95953 as yet unmatched pairs. 18116 records in RAM. INFO 2026-06-04 21:32:23 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr20:47,627,163 INFO 2026-06-04 21:32:23 MarkDuplicates Tracking 89186 as yet unmatched pairs. 11349 records in RAM. INFO 2026-06-04 21:32:24 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr20:50,942,083 INFO 2026-06-04 21:32:24 MarkDuplicates Tracking 87613 as yet unmatched pairs. 9773 records in RAM. INFO 2026-06-04 21:32:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr20:58,840,808 INFO 2026-06-04 21:32:25 MarkDuplicates Tracking 90178 as yet unmatched pairs. 12336 records in RAM. INFO 2026-06-04 21:32:27 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,350 INFO 2026-06-04 21:32:27 MarkDuplicates Tracking 87816 as yet unmatched pairs. 9974 records in RAM. INFO 2026-06-04 21:32:28 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr20:62,139,828 INFO 2026-06-04 21:32:28 MarkDuplicates Tracking 82804 as yet unmatched pairs. 4955 records in RAM. INFO 2026-06-04 21:32:30 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:63,603,048 INFO 2026-06-04 21:32:30 MarkDuplicates Tracking 79220 as yet unmatched pairs. 1369 records in RAM. INFO 2026-06-04 21:32:31 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,656 INFO 2026-06-04 21:32:31 MarkDuplicates Tracking 77637 as yet unmatched pairs. 21092 records in RAM. INFO 2026-06-04 21:32:32 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 0s. Last read position: chr21:8,400,184 INFO 2026-06-04 21:32:32 MarkDuplicates Tracking 77214 as yet unmatched pairs. 20656 records in RAM. INFO 2026-06-04 21:32:33 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:25,911,931 INFO 2026-06-04 21:32:33 MarkDuplicates Tracking 76486 as yet unmatched pairs. 19921 records in RAM. INFO 2026-06-04 21:32:35 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,669 INFO 2026-06-04 21:32:35 MarkDuplicates Tracking 74464 as yet unmatched pairs. 17899 records in RAM. INFO 2026-06-04 21:32:37 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr21:39,293,848 INFO 2026-06-04 21:32:37 MarkDuplicates Tracking 72283 as yet unmatched pairs. 15717 records in RAM. INFO 2026-06-04 21:32:38 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr21:44,888,864 INFO 2026-06-04 21:32:38 MarkDuplicates Tracking 70618 as yet unmatched pairs. 14052 records in RAM. INFO 2026-06-04 21:32:40 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr21:45,987,638 INFO 2026-06-04 21:32:40 MarkDuplicates Tracking 72170 as yet unmatched pairs. 15604 records in RAM. INFO 2026-06-04 21:32:41 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,204 INFO 2026-06-04 21:32:41 MarkDuplicates Tracking 74790 as yet unmatched pairs. 18224 records in RAM. INFO 2026-06-04 21:32:43 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,235 INFO 2026-06-04 21:32:43 MarkDuplicates Tracking 66864 as yet unmatched pairs. 10297 records in RAM. INFO 2026-06-04 21:32:45 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,073 INFO 2026-06-04 21:32:45 MarkDuplicates Tracking 69731 as yet unmatched pairs. 13164 records in RAM. INFO 2026-06-04 21:32:47 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 2s. Last read position: chr21:46,118,616 INFO 2026-06-04 21:32:47 MarkDuplicates Tracking 63258 as yet unmatched pairs. 6690 records in RAM. INFO 2026-06-04 21:32:49 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr21:46,126,085 INFO 2026-06-04 21:32:49 MarkDuplicates Tracking 66265 as yet unmatched pairs. 9695 records in RAM. INFO 2026-06-04 21:32:51 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr22:17,683,274 INFO 2026-06-04 21:32:51 MarkDuplicates Tracking 56521 as yet unmatched pairs. 16192 records in RAM. INFO 2026-06-04 21:32:52 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr22:22,549,987 INFO 2026-06-04 21:32:52 MarkDuplicates Tracking 55638 as yet unmatched pairs. 15308 records in RAM. INFO 2026-06-04 21:32:54 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,054 INFO 2026-06-04 21:32:54 MarkDuplicates Tracking 54113 as yet unmatched pairs. 13783 records in RAM. INFO 2026-06-04 21:32:55 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr22:30,934,925 INFO 2026-06-04 21:32:55 MarkDuplicates Tracking 50964 as yet unmatched pairs. 10634 records in RAM. INFO 2026-06-04 21:32:57 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr22:36,298,923 INFO 2026-06-04 21:32:57 MarkDuplicates Tracking 48858 as yet unmatched pairs. 8527 records in RAM. INFO 2026-06-04 21:32:58 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr22:38,074,948 INFO 2026-06-04 21:32:58 MarkDuplicates Tracking 46722 as yet unmatched pairs. 6388 records in RAM. INFO 2026-06-04 21:33:00 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:41,127,682 INFO 2026-06-04 21:33:00 MarkDuplicates Tracking 45116 as yet unmatched pairs. 4780 records in RAM. INFO 2026-06-04 21:33:01 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr22:45,212,242 INFO 2026-06-04 21:33:01 MarkDuplicates Tracking 43085 as yet unmatched pairs. 2749 records in RAM. INFO 2026-06-04 21:33:03 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,756 INFO 2026-06-04 21:33:03 MarkDuplicates Tracking 41418 as yet unmatched pairs. 1082 records in RAM. INFO 2026-06-04 21:33:05 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chrX:3,311,226 INFO 2026-06-04 21:33:05 MarkDuplicates Tracking 39784 as yet unmatched pairs. 37114 records in RAM. INFO 2026-06-04 21:33:06 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chrX:11,760,481 INFO 2026-06-04 21:33:06 MarkDuplicates Tracking 37376 as yet unmatched pairs. 34704 records in RAM. INFO 2026-06-04 21:33:07 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chrX:23,667,603 INFO 2026-06-04 21:33:07 MarkDuplicates Tracking 35603 as yet unmatched pairs. 32923 records in RAM. INFO 2026-06-04 21:33:09 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chrX:40,597,310 INFO 2026-06-04 21:33:09 MarkDuplicates Tracking 33845 as yet unmatched pairs. 31165 records in RAM. INFO 2026-06-04 21:33:11 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chrX:47,142,395 INFO 2026-06-04 21:33:11 MarkDuplicates Tracking 33467 as yet unmatched pairs. 30787 records in RAM. INFO 2026-06-04 21:33:12 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,521 INFO 2026-06-04 21:33:12 MarkDuplicates Tracking 35998 as yet unmatched pairs. 33318 records in RAM. INFO 2026-06-04 21:33:13 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chrX:49,122,705 INFO 2026-06-04 21:33:13 MarkDuplicates Tracking 27928 as yet unmatched pairs. 25248 records in RAM. INFO 2026-06-04 21:33:15 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chrX:53,194,330 INFO 2026-06-04 21:33:15 MarkDuplicates Tracking 27066 as yet unmatched pairs. 24386 records in RAM. INFO 2026-06-04 21:33:16 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chrX:53,624,613 INFO 2026-06-04 21:33:16 MarkDuplicates Tracking 24923 as yet unmatched pairs. 22243 records in RAM. INFO 2026-06-04 21:33:18 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chrX:65,729,646 INFO 2026-06-04 21:33:18 MarkDuplicates Tracking 23595 as yet unmatched pairs. 20915 records in RAM. INFO 2026-06-04 21:33:19 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:71,299,795 INFO 2026-06-04 21:33:19 MarkDuplicates Tracking 22481 as yet unmatched pairs. 19801 records in RAM. INFO 2026-06-04 21:33:20 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chrX:77,574,292 INFO 2026-06-04 21:33:20 MarkDuplicates Tracking 20221 as yet unmatched pairs. 17541 records in RAM. INFO 2026-06-04 21:33:22 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chrX:79,361,406 INFO 2026-06-04 21:33:22 MarkDuplicates Tracking 18943 as yet unmatched pairs. 16263 records in RAM. INFO 2026-06-04 21:33:24 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chrX:101,616,304 INFO 2026-06-04 21:33:24 MarkDuplicates Tracking 15383 as yet unmatched pairs. 12703 records in RAM. INFO 2026-06-04 21:33:25 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chrX:110,264,574 INFO 2026-06-04 21:33:25 MarkDuplicates Tracking 13744 as yet unmatched pairs. 11064 records in RAM. INFO 2026-06-04 21:33:27 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chrX:120,253,423 INFO 2026-06-04 21:33:27 MarkDuplicates Tracking 11886 as yet unmatched pairs. 9205 records in RAM. INFO 2026-06-04 21:33:29 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:130,015,762 INFO 2026-06-04 21:33:29 MarkDuplicates Tracking 10191 as yet unmatched pairs. 7510 records in RAM. INFO 2026-06-04 21:33:30 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:149,525,802 INFO 2026-06-04 21:33:30 MarkDuplicates Tracking 8148 as yet unmatched pairs. 5467 records in RAM. INFO 2026-06-04 21:33:32 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,670 INFO 2026-06-04 21:33:32 MarkDuplicates Tracking 6345 as yet unmatched pairs. 3664 records in RAM. INFO 2026-06-04 21:33:34 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chrX:154,370,873 INFO 2026-06-04 21:33:34 MarkDuplicates Tracking 4960 as yet unmatched pairs. 2277 records in RAM. INFO 2026-06-04 21:33:36 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrM:9,274 INFO 2026-06-04 21:33:36 MarkDuplicates Tracking 2554 as yet unmatched pairs. 48 records in RAM. INFO 2026-06-04 21:33:37 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 0s. Last read position: KI270711.1:12,953 INFO 2026-06-04 21:33:37 MarkDuplicates Tracking 1418 as yet unmatched pairs. 22 records in RAM. INFO 2026-06-04 21:33:38 MarkDuplicates Read 624990020 records. 0 pairs never matched. INFO 2026-06-04 21:34:25 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141800; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:34:25 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-04 21:34:28 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-04 21:34:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 3328 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,193 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,187 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,772 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1350 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,103 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,564 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1689 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,649 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1955 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,157 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1657 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,199 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,697 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,608 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1517 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,102 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 2425 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,188 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,322 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,764 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 2581 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,794 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,197 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1488 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,656 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder Large duplicate set. size = 1458 INFO 2026-06-04 21:34:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,879 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,282 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,518 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1119 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,767 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1891 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,915 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1198 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,946 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,032 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,149 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,264 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 3117 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,969 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,952 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,946 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1323 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,308 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,795 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1165 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 2848 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,178 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,249 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1825 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,720 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 2321 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,650 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,041 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,038 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1370 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,253 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,469 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1393 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,988 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1354 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,146 INFO 2026-06-04 21:34:41 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,770 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1709 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,102 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 2471 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,824 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,328 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,995 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,122 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,208 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,554 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,734 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,797 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,603 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1316 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,579 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,741 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,655 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,157 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,073 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-04 21:34:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,269 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,977 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1364 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,752 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1233 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,051 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,456 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1715 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,513 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1322 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,462 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1347 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,011 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,206 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,345 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-04 21:34:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,232 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,282 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,874 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1889 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,206 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1710 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,846 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1395 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,142 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,177 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1676 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,055 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder Large duplicate set. size = 1319 INFO 2026-06-04 21:34:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,293 INFO 2026-06-04 21:34:45 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-04 21:34:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006 INFO 2026-06-04 21:34:56 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-04 21:34:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111 INFO 2026-06-04 21:34:58 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-04 21:34:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,753 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,712 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder Large duplicate set. size = 1636 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,386 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder Large duplicate set. size = 1119 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,138 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-04 21:35:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,999 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1197 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,595 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,424 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 2656 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,441 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,685 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1468 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,635 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1297 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,271 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1632 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,332 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1366 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,936 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder Large duplicate set. size = 1732 INFO 2026-06-04 21:35:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,951 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1274 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 2076 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,544 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,512 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1339 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,478 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,205 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1641 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,714 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,302 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,904 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,138 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,019 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,300 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,735 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1143 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,090 INFO 2026-06-04 21:35:22 OpticalDuplicateFinder Large duplicate set. size = 1616 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,042 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder Large duplicate set. size = 1292 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,179 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder Large duplicate set. size = 1293 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,109 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-04 21:35:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,376 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,145 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,969 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 2380 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,640 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,787 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1109 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,290 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1709 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,184 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1476 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,725 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1374 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,086 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,795 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1780 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,144 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1952 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,764 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,792 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 2320 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,556 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,886 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1234 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,831 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1400 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,752 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,722 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1490 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,545 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 1701 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,993 INFO 2026-06-04 21:35:24 OpticalDuplicateFinder Large duplicate set. size = 2762 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,125 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,934 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,094 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,378 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1267 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,025 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,103 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,608 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1631 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,528 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,359 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1633 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,265 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 2289 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,153 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,264 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 2058 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,940 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,268 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1948 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,942 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 2656 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,657 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,768 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1265 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,758 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1515 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,669 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,699 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,542 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,459 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,835 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,861 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1396 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,015 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1849 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,946 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,520 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,244 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1470 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,279 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 2713 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,723 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,768 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,236 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1547 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,792 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1798 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,539 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1350 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,046 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,370 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1513 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,865 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,522 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,907 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,202 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,207 INFO 2026-06-04 21:35:25 OpticalDuplicateFinder Large duplicate set. size = 1885 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,077 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,124 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,847 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,632 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,489 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1302 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,502 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1507 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1485 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,643 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,527 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 2797 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,111 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,249 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1270 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,307 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,574 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,786 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-04 21:35:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,005 INFO 2026-06-04 21:35:50 OpticalDuplicateFinder Large duplicate set. size = 1514 INFO 2026-06-04 21:35:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,773 INFO 2026-06-04 21:35:54 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-04 21:35:54 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:37:00 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-04 21:37:01 MarkDuplicates After generateDuplicateIndexes freeMemory: 203873224; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:37:01 MarkDuplicates Marking 301797505 records as duplicates. INFO 2026-06-04 21:37:01 MarkDuplicates Found 13929279 optical duplicate clusters. INFO 2026-06-04 21:37:01 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-04 21:37:18 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,844,265 INFO 2026-06-04 21:37:35 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:41,580,185 INFO 2026-06-04 21:37:52 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:109,397,769 INFO 2026-06-04 21:38:08 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:150,364,656 INFO 2026-06-04 21:38:24 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:158,087,836 INFO 2026-06-04 21:38:41 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:39s. Time for last 10,000,000: 16s. Last read position: chr1:186,308,488 INFO 2026-06-04 21:38:57 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:55s. Time for last 10,000,000: 16s. Last read position: chr1:235,664,466 INFO 2026-06-04 21:39:13 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 15s. Last read position: chr2:37,213,888 INFO 2026-06-04 21:39:29 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:108,767,854 INFO 2026-06-04 21:39:45 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 16s. Last read position: chr2:188,995,696 INFO 2026-06-04 21:40:01 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr2:215,372,126 INFO 2026-06-04 21:40:17 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 15s. Last read position: chr2:215,404,588 INFO 2026-06-04 21:40:32 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 15s. Last read position: chr2:218,265,108 INFO 2026-06-04 21:40:48 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:46s. Time for last 10,000,000: 15s. Last read position: chr2:241,264,569 INFO 2026-06-04 21:41:04 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 16s. Last read position: chr3:52,206,632 INFO 2026-06-04 21:41:21 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 16s. Last read position: chr3:129,571,509 INFO 2026-06-04 21:41:37 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 16s. Last read position: chr4:2,928,559 INFO 2026-06-04 21:41:53 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 16s. Last read position: chr4:143,195,792 INFO 2026-06-04 21:42:09 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 16s. Last read position: chr5:72,197,401 INFO 2026-06-04 21:42:25 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 16s. Last read position: chr5:142,314,647 INFO 2026-06-04 21:42:41 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 15s. Last read position: chr5:177,492,644 INFO 2026-06-04 21:42:57 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:55s. Time for last 10,000,000: 15s. Last read position: chr6:31,647,792 INFO 2026-06-04 21:43:13 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 15s. Last read position: chr6:63,711,639 INFO 2026-06-04 21:43:29 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 16s. Last read position: chr6:158,452,240 INFO 2026-06-04 21:43:45 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 15s. Last read position: chr7:28,955,712 INFO 2026-06-04 21:44:01 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 16s. Last read position: chr7:94,400,225 INFO 2026-06-04 21:44:17 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 15s. Last read position: chr7:130,497,999 INFO 2026-06-04 21:44:33 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 16s. Last read position: chr8:38,414,169 INFO 2026-06-04 21:44:49 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 16s. Last read position: chr8:133,246,642 INFO 2026-06-04 21:45:06 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 16s. Last read position: chr9:106,935,566 INFO 2026-06-04 21:45:22 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 16s. Last read position: chr10:221,209 INFO 2026-06-04 21:45:38 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 16s. Last read position: chr10:101,799,033 INFO 2026-06-04 21:45:54 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 15s. Last read position: chr11:9,576,237 INFO 2026-06-04 21:46:10 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 16s. Last read position: chr11:64,878,321 INFO 2026-06-04 21:46:26 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 16s. Last read position: chr11:102,863,021 INFO 2026-06-04 21:46:42 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr12:7,921,607 INFO 2026-06-04 21:46:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 16s. Last read position: chr12:51,913,166 INFO 2026-06-04 21:47:14 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 15s. Last read position: chr12:57,535,762 INFO 2026-06-04 21:47:30 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 16s. Last read position: chr12:112,917,615 INFO 2026-06-04 21:47:47 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 16s. Last read position: chr13:37,570,578 INFO 2026-06-04 21:48:03 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 16s. Last read position: chr13:113,495,554 INFO 2026-06-04 21:48:19 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 16s. Last read position: chr14:94,100,800 INFO 2026-06-04 21:48:35 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 16s. Last read position: chr15:59,107,374 INFO 2026-06-04 21:48:51 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 16s. Last read position: chr15:92,924,388 INFO 2026-06-04 21:49:07 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 16s. Last read position: chr16:18,364,311 INFO 2026-06-04 21:49:23 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:21s. Time for last 10,000,000: 15s. Last read position: chr16:48,561,936 INFO 2026-06-04 21:49:39 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:37s. Time for last 10,000,000: 16s. Last read position: chr17:1,728,108 INFO 2026-06-04 21:49:56 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 16s. Last read position: chr17:31,095,334 INFO 2026-06-04 21:50:12 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 16s. Last read position: chr17:50,150,354 INFO 2026-06-04 21:50:28 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 15s. Last read position: chr17:50,191,442 INFO 2026-06-04 21:50:45 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr17:50,199,281 INFO 2026-06-04 21:51:02 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 16s. Last read position: chr17:76,736,181 INFO 2026-06-04 21:51:18 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 16s. Last read position: chr18:62,978,999 INFO 2026-06-04 21:51:35 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 16s. Last read position: chr19:11,364,382 INFO 2026-06-04 21:51:51 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 16s. Last read position: chr19:34,500,159 INFO 2026-06-04 21:52:07 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 16s. Last read position: chr19:48,874,097 INFO 2026-06-04 21:52:24 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:22s. Time for last 10,000,000: 16s. Last read position: chr20:23,633,926 INFO 2026-06-04 21:52:40 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 16s. Last read position: chr20:62,139,828 INFO 2026-06-04 21:52:56 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:54s. Time for last 10,000,000: 15s. Last read position: chr21:46,002,235 INFO 2026-06-04 21:53:12 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 16s. Last read position: chr22:41,127,682 INFO 2026-06-04 21:53:29 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:27s. Time for last 10,000,000: 16s. Last read position: chrX:53,194,330 INFO 2026-06-04 21:53:45 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:43s. Time for last 10,000,000: 16s. Last read position: chrX:149,525,802 INFO 2026-06-04 21:54:00 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-04 21:54:00 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-04 21:54:00 MarkDuplicates Getting Memory Stats. INFO 2026-06-04 21:54:00 MarkDuplicates Before output close freeMemory: 203819296; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:54:00 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-04 21:54:00 MarkDuplicates After output close freeMemory: 104074088; totalMemory: 134217728; maxMemory: 63585648640 [Thu Jun 04 21:54:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.22 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory