File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5cc7fe256bf3875ed9c4c96a176807/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 239
  Pass (FILTER=PASS): 31 (13.0%)
  Fail (FILTER=FAIL): 208 (87.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 12
  All 12 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 78
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 17
  confidence_below_min(low<high): 15
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 12
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 8
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 7
  confidence_below_min(medium<high);aih_curated_blacklist: 5
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2

Breakdown by confidence:
  high: 31 pass, 2 fail (total: 33)
  low: 0 pass, 80 fail (total: 80)
  medium: 0 pass, 126 fail (total: 126)
Arriba filter: 239 rows -> 31 PASS; wrote 659_SP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_SP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_SP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt