File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/bf077fac34c8555f4b30abf8882ceb/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_1q-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/bf077fac34c8555f4b30abf8882ceb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/bf077fac34c8555f4b30abf8882ceb/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/f1e0f1ba570027e213bb8c602248fe/659_1q-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/88f32adb068355538fd3642cb0678f/659_1q-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
SCX--AC234917.3
starfusion
arriba
BCAP31--PDZD4
starfusion
SNU13--LLPH
starfusion
GUCY1B2--NKAIN2
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  12%|█▎        | 1/8 [00:00<00:00,  9.22it/s]
Processing SCX--AC234917.3:  12%|█▎        | 1/8 [00:00<00:00,  9.22it/s]
Processing SCX--AC234917.3:  25%|██▌       | 2/8 [00:00<00:00,  9.44it/s]
Processing BCAP31--PDZD4:  25%|██▌       | 2/8 [00:00<00:00,  9.44it/s]  
Processing BCAP31--PDZD4:  38%|███▊      | 3/8 [00:00<00:00,  9.52it/s]
Processing SNU13--LLPH:  38%|███▊      | 3/8 [00:00<00:00,  9.52it/s]  
Processing SNU13--LLPH:  50%|█████     | 4/8 [00:00<00:00,  9.57it/s]
Processing GUCY1B2--NKAIN2:  50%|█████     | 4/8 [00:00<00:00,  9.57it/s]
Processing GUCY1B2--NKAIN2:  62%|██████▎   | 5/8 [00:00<00:00,  9.59it/s]
Processing STX16--NPEPL1:  62%|██████▎   | 5/8 [00:00<00:00,  9.59it/s]  
Processing STX16--NPEPL1:  75%|███████▌  | 6/8 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  75%|███████▌  | 6/8 [00:00<00:00,  9.61it/s]
Processing TLK2--AC240565.1:  88%|████████▊ | 7/8 [00:00<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  88%|████████▊ | 7/8 [00:00<00:00,  9.61it/s]   
Processing TVP23C--CDRT4: 100%|██████████| 8/8 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4: 100%|██████████| 8/8 [00:00<00:00,  9.57it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory