Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/734564fda41ea8ae735ba28dfa65d3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/734564fda41ea8ae735ba28dfa65d3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/678f4292bea477442ca7b14829d7a1/659_ecd-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/678f4292bea477442ca7b14829d7a1/659_ecd-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory