Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/07562f5ee989f991454f8da4128c6d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/c035d5fdb343b39bc46090f68070e1/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/07562f5ee989f991454f8da4128c6d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a43a0b31dcf4447d020da2896be28b/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AGAP3--BRAF
starfusion
arriba
SYNE2--MTHFD1
starfusion
arriba
TLK2--AC240565.1
starfusion
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
SMARCD3--MGAM
starfusion
arriba
REXO5--TMX1
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
TLK2--FAM157A
arriba

  0%|          | 0/13 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   0%|          | 0/13 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   8%|▊         | 1/13 [00:00<00:01,  9.23it/s]
Processing SYNE2--MTHFD1:   8%|▊         | 1/13 [00:00<00:01,  9.23it/s]
Processing SYNE2--MTHFD1:  15%|█▌        | 2/13 [00:00<00:01,  9.47it/s]
Processing TLK2--AC240565.1:  15%|█▌        | 2/13 [00:00<00:01,  9.47it/s]
Processing TLK2--AC240565.1:  23%|██▎       | 3/13 [00:00<00:01,  9.55it/s]
Processing LINC00381--NKAIN2:  23%|██▎       | 3/13 [00:00<00:01,  9.55it/s]
Processing LINC00381--NKAIN2:  31%|███       | 4/13 [00:00<00:00,  9.59it/s]
Processing GUCY1B2--NKAIN2:  31%|███       | 4/13 [00:00<00:00,  9.59it/s]  
Processing GUCY1B2--NKAIN2:  38%|███▊      | 5/13 [00:00<00:00,  9.61it/s]
Processing SMARCD3--MGAM:  38%|███▊      | 5/13 [00:00<00:00,  9.61it/s]  
Processing SMARCD3--MGAM:  46%|████▌     | 6/13 [00:00<00:00,  9.62it/s]
Processing REXO5--TMX1:  46%|████▌     | 6/13 [00:00<00:00,  9.62it/s]  
Processing REXO5--TMX1:  54%|█████▍    | 7/13 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 7/13 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  62%|██████▏   | 8/13 [00:00<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  62%|██████▏   | 8/13 [00:00<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  69%|██████▉   | 9/13 [00:00<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC2:  69%|██████▉   | 9/13 [00:00<00:00,  9.64it/s]   
Processing PCDHA10--PCDHAC2:  77%|███████▋  | 10/13 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  77%|███████▋  | 10/13 [00:01<00:00,  9.64it/s]
Processing PCDHA10--PCDHAC1:  85%|████████▍ | 11/13 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  85%|████████▍ | 11/13 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  92%|█████████▏| 12/13 [00:01<00:00,  9.65it/s]
Processing TLK2--FAM157A:  92%|█████████▏| 12/13 [00:01<00:00,  9.65it/s]   
Processing TLK2--FAM157A: 100%|██████████| 13/13 [00:01<00:00,  9.65it/s]
Processing TLK2--FAM157A: 100%|██████████| 13/13 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory