Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/d9093d015e2877897b0f3b42be214f/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2088b2b1aa0956161f6217903f4f29/659_cuO-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/d9093d015e2877897b0f3b42be214f/.command.run ==> STAGING COMPLETE (3 inputs) ls: *.bai: No such file or directory ls: *.csi: No such file or directory