File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/5a4b4a77af173e256d9f69ca0b37e5/.command.log
Size
4.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bCu-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/5a4b4a77af173e256d9f69ca0b37e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7cbe20aef58237ac98949810e8be15/659_bCu-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/5a4b4a77af173e256d9f69ca0b37e5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/93d2dd1ba018446e721a419eaf65b8/659_bCu-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TNS1--ALK
starfusion
arriba
NAV2--NELL1
starfusion
arriba
TRPC2--WEE1
starfusion
arriba
IRAG1--ZNF143
starfusion
arriba
PPFIBP2--PARVA
starfusion
arriba
RHOG--SBF2
starfusion
arriba
ADAM23--HDAC4
starfusion
arriba
HDAC4--KCNS3
starfusion
arriba
NELL1--INSC
arriba
SBF2--AC087379.1
arriba
SBF2--AC009869.1
arriba
BMS1P23--AFF3
arriba
AL845331.2--AFF3
arriba
HDAC4--HDAC4
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
ZNF143--LINC02751
arriba
ALK--SPHKAP
arriba
ALK--SNF8P1
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing TNS1--ALK:   0%|          | 0/20 [00:00<?, ?it/s]
Processing TNS1--ALK:   5%|▌         | 1/20 [00:00<00:02,  9.05it/s]
Processing NAV2--NELL1:   5%|▌         | 1/20 [00:00<00:02,  9.05it/s]
Processing NAV2--NELL1:  10%|█         | 2/20 [00:00<00:01,  9.31it/s]
Processing TRPC2--WEE1:  10%|█         | 2/20 [00:00<00:01,  9.31it/s]
Processing TRPC2--WEE1:  15%|█▌        | 3/20 [00:00<00:01,  9.40it/s]
Processing IRAG1--ZNF143:  15%|█▌        | 3/20 [00:00<00:01,  9.40it/s]
Processing IRAG1--ZNF143:  20%|██        | 4/20 [00:00<00:01,  9.45it/s]
Processing PPFIBP2--PARVA:  20%|██        | 4/20 [00:00<00:01,  9.45it/s]
Processing PPFIBP2--PARVA:  25%|██▌       | 5/20 [00:00<00:01,  9.47it/s]
Processing RHOG--SBF2:  25%|██▌       | 5/20 [00:00<00:01,  9.47it/s]    
Processing RHOG--SBF2:  30%|███       | 6/20 [00:00<00:01,  9.48it/s]
Processing ADAM23--HDAC4:  30%|███       | 6/20 [00:00<00:01,  9.48it/s]
Processing ADAM23--HDAC4:  35%|███▌      | 7/20 [00:00<00:01,  9.48it/s]
Processing HDAC4--KCNS3:  35%|███▌      | 7/20 [00:00<00:01,  9.48it/s] 
Processing HDAC4--KCNS3:  40%|████      | 8/20 [00:00<00:01,  9.50it/s]
Processing NELL1--INSC:  40%|████      | 8/20 [00:00<00:01,  9.50it/s] 
Processing NELL1--INSC:  45%|████▌     | 9/20 [00:00<00:01,  9.50it/s]
Processing SBF2--AC087379.1:  45%|████▌     | 9/20 [00:00<00:01,  9.50it/s]
Processing SBF2--AC087379.1:  50%|█████     | 10/20 [00:01<00:01,  9.51it/s]
Processing SBF2--AC009869.1:  50%|█████     | 10/20 [00:01<00:01,  9.51it/s]
Processing SBF2--AC009869.1:  55%|█████▌    | 11/20 [00:01<00:00,  9.52it/s]
Processing BMS1P23--AFF3:  55%|█████▌    | 11/20 [00:01<00:00,  9.52it/s]   
Processing BMS1P23--AFF3:  60%|██████    | 12/20 [00:01<00:00,  9.51it/s]
Processing AL845331.2--AFF3:  60%|██████    | 12/20 [00:01<00:00,  9.51it/s]
Processing AL845331.2--AFF3:  65%|██████▌   | 13/20 [00:01<00:00,  9.52it/s]
Processing HDAC4--HDAC4:  65%|██████▌   | 13/20 [00:01<00:00,  9.52it/s]    
Processing HDAC4--HDAC4:  70%|███████   | 14/20 [00:01<00:00,  9.52it/s]
Processing PCDHA10--PCDHAC2:  70%|███████   | 14/20 [00:01<00:00,  9.52it/s]
Processing PCDHA10--PCDHAC2:  75%|███████▌  | 15/20 [00:01<00:00,  9.52it/s]
Processing PCDHA10--PCDHAC1:  75%|███████▌  | 15/20 [00:01<00:00,  9.52it/s]
Processing PCDHA10--PCDHAC1:  80%|████████  | 16/20 [00:01<00:00,  9.53it/s]
Processing PCDHA10--PCDHA13:  80%|████████  | 16/20 [00:01<00:00,  9.53it/s]
Processing PCDHA10--PCDHA13:  85%|████████▌ | 17/20 [00:01<00:00,  9.54it/s]
Processing ZNF143--LINC02751:  85%|████████▌ | 17/20 [00:01<00:00,  9.54it/s]
Processing ZNF143--LINC02751:  90%|█████████ | 18/20 [00:01<00:00,  9.54it/s]
Processing ALK--SPHKAP:  90%|█████████ | 18/20 [00:01<00:00,  9.54it/s]      
Processing ALK--SPHKAP:  95%|█████████▌| 19/20 [00:02<00:00,  9.55it/s]
Processing ALK--SNF8P1:  95%|█████████▌| 19/20 [00:02<00:00,  9.55it/s]
Processing ALK--SNF8P1: 100%|██████████| 20/20 [00:02<00:00,  9.55it/s]
Processing ALK--SNF8P1: 100%|██████████| 20/20 [00:02<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory