Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/148f611a7a517a90d4d5f57f49e117/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/171c1d4c3133b106c9e055f66ee0ab/659_epZ-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/148f611a7a517a90d4d5f57f49e117/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/171c1d4c3133b106c9e055f66ee0ab/659_epZ-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory