Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/fd0a7de24500b0ba9f9313f9a0bf3e/659_6i-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/497821d21ef0f401eef1e06ac4b082/659_6i-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/de08b59a77586fefc25b11f2298d8c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/de08b59a77586fefc25b11f2298d8c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TMPRSS2--ERG
starfusion
arriba
CPNE4--ADGRG7
starfusion
arriba
DAPK2--RAD51B
starfusion
arriba
AC026412.1--LPCAT1
starfusion
TLK2--AC240565.1
starfusion
COP1--UBAP2L
starfusion
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
ARL13B--AC021055.1
arriba
ARL13B--LINC02031
arriba
ZNF292--NPM1P10
arriba
ZNF292--AL357522.1
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:   0%|          | 0/18 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:   6%|▌         | 1/18 [00:00<00:01,  9.22it/s]
Processing CPNE4--ADGRG7:   6%|▌         | 1/18 [00:00<00:01,  9.22it/s]
Processing CPNE4--ADGRG7:  11%|█         | 2/18 [00:00<00:01,  9.46it/s]
Processing DAPK2--RAD51B:  11%|█         | 2/18 [00:00<00:01,  9.46it/s]
Processing DAPK2--RAD51B:  17%|█▋        | 3/18 [00:00<00:01,  9.54it/s]
Processing AC026412.1--LPCAT1:  17%|█▋        | 3/18 [00:00<00:01,  9.54it/s]
Processing AC026412.1--LPCAT1:  22%|██▏       | 4/18 [00:00<00:01,  9.58it/s]
Processing TLK2--AC240565.1:  22%|██▏       | 4/18 [00:00<00:01,  9.58it/s]  
Processing TLK2--AC240565.1:  28%|██▊       | 5/18 [00:00<00:01,  9.60it/s]
Processing COP1--UBAP2L:  28%|██▊       | 5/18 [00:00<00:01,  9.60it/s]    
Processing COP1--UBAP2L:  33%|███▎      | 6/18 [00:00<00:01,  9.61it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 6/18 [00:00<00:01,  9.61it/s]
Processing TVP23C--CDRT4:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing AC092807.3--DDAH1:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing AC092807.3--DDAH1:  44%|████▍     | 8/18 [00:00<00:01,  9.62it/s]
Processing PCDHA4--PCDHAC1:  44%|████▍     | 8/18 [00:00<00:01,  9.62it/s]  
Processing PCDHA4--PCDHAC1:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC2:  56%|█████▌    | 10/18 [00:01<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  56%|█████▌    | 10/18 [00:01<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  61%|██████    | 11/18 [00:01<00:00,  9.63it/s]
Processing ARL13B--AC021055.1:  61%|██████    | 11/18 [00:01<00:00,  9.63it/s]
Processing ARL13B--AC021055.1:  67%|██████▋   | 12/18 [00:01<00:00,  9.63it/s]
Processing ARL13B--LINC02031:  67%|██████▋   | 12/18 [00:01<00:00,  9.63it/s] 
Processing ARL13B--LINC02031:  72%|███████▏  | 13/18 [00:01<00:00,  9.63it/s]
Processing ZNF292--NPM1P10:  72%|███████▏  | 13/18 [00:01<00:00,  9.63it/s]  
Processing ZNF292--NPM1P10:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]
Processing ZNF292--AL357522.1:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]
Processing ZNF292--AL357522.1:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]
Processing PCDHA11--PCDHAC1:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]  
Processing PCDHA11--PCDHAC1:  89%|████████▉ | 16/18 [00:01<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  89%|████████▉ | 16/18 [00:01<00:00,  9.63it/s]
Processing PCDHA11--PCDHAC2:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 18/18 [00:01<00:00,  9.64it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 18/18 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory